NeurIPS 2023 论文列表

In this work, we aim to establish a strong connection between two significant bodies of machine learning research: continual learning and sequence modeling. That is, we propose to formulate continual learning as a sequence modeling problem, allowing advanced sequence models to be utilized for continual learning. Under this formulation, the continual learning process becomes the forward pass of a sequence model. By adopting the meta-continual learning (MCL) framework, we can train the sequence model at the meta-level, on multiple continual learning episodes. As a specific example of our new formulation, we demonstrate the application of Transformers and their efficient variants as MCL methods. Our experiments on seven benchmarks, covering both classification and regression, show that sequence models can be an attractive solution for general MCL.

Self-supervised learning (SSL) has great potential for molecular representation learning given the complexity of molecular graphs, the large amounts of unlabelled data available, the considerable cost of obtaining labels experimentally, and the hence often only small training datasets. The importance of the topic is reflected in the variety of paradigms and architectures that have been investigated recently, most focus on designing views for contrastive learning. In this paper, we study SSL based on persistent homology (PH), a mathematical tool for modeling topological features of data that persist across multiple scales. It has several unique features which particularly suit SSL, naturally offering: different views of the data, stability in terms of distance preservation, and the opportunity to flexibly incorporate domain knowledge. We (1) investigate an autoencoder, which shows the general representational power of PH, and (2) propose a contrastive loss that complements existing approaches. We rigorously evaluate our approach for molecular property prediction and demonstrate its particular features in improving the embedding space: after SSL, the representations are better and offer considerably more predictive power than the baselines over different probing tasks; our loss increases baseline performance, sometimes largely; and we often obtain substantial improvements over very small datasets, a common scenario in practice.

Fourier neural operators (FNOs) can learn highly nonlinear mappings between function spaces, and have recently become a popular tool for learning responses of complex physical systems. However, to achieve good accuracy and efficiency, FNOs rely on the Fast Fourier transform (FFT), which is restricted to modeling problems on rectangular domains. To lift such a restriction and permit FFT on irregular geometries as well as topology changes, we introduce domain agnostic Fourier neural operator (DAFNO), a novel neural operator architecture for learning surrogates with irregular geometries and evolving domains. The key idea is to incorporate a smoothed characteristic function in the integral layer architecture of FNOs, and leverage FFT to achieve rapid computations, in such a way that the geometric information is explicitly encoded in the architecture. In our empirical evaluation, DAFNO has achieved state-of-the-art accuracy as compared to baseline neural operator models on two benchmark datasets of material modeling and airfoil simulation. To further demonstrate the capability and generalizability of DAFNO in handling complex domains with topology changes, we consider a brittle material fracture evolution problem. With only one training crack simulation sample, DAFNO has achieved generalizability to unseen loading scenarios and substantially different crack patterns from the trained scenario. Our code and data accompanying this paper are available at https://github.com/ningliu-iga/DAFNO.

User modeling techniques profile users' latent characteristics (e.g., preference) from their observed behaviors, and play a crucial role in decision-making. Unfortunately, traditional user models may unconsciously capture biases related to sensitive attributes (e.g., gender) from behavior data, even when this sensitive information is not explicitly provided. This can lead to unfair issues and discrimination against certain groups based on these sensitive attributes. Recent studies have been proposed to improve fairness by explicitly decorrelating user modeling results and sensitive attributes. However, most existing approaches assume that fully sensitive attribute labels are available in the training set, which is unrealistic due to collection limitations like privacy concerns, and hence bear the limitation of performance. In this paper, we focus on a practical situation with limited sensitive data and propose a novel FairLISA framework, which can efficiently utilize data with known and unknown sensitive attributes to facilitate fair model training. We first propose a novel theoretical perspective to build the relationship between data with both known and unknown sensitive attributes with the fairness objective. Then, based on this, we provide a general adversarial framework to effectively leverage the whole user data for fair user modeling. We conduct experiments on representative user modeling tasks including recommender system and cognitive diagnosis. The results demonstrate that our FairLISA can effectively improve fairness while retaining high accuracy in scenarios with different ratios of missing sensitive attributes.

Federated learning algorithms enable neural network models to be trained across multiple decentralized edge devices without sharing private data. However, they are susceptible to backdoor attacks launched by malicious clients. Existing robust federated aggregation algorithms heuristically detect and exclude suspicious clients based on their parameter distances, but they are ineffective on Natural Language Processing (NLP) tasks. The main reason is that, although text backdoor patterns are obvious at the underlying dataset level, they are usually hidden at the parameter level, since injecting backdoors into texts with discrete feature space has less impact on the statistics of the model parameters. To settle this issue, we propose to identify backdoor clients by explicitly modeling the data divergence among clients in federated NLP systems. Through theoretical analysis, we derive the f-divergence indicator to estimate the client data divergence with aggregation updates and Hessians. Furthermore, we devise a dataset synthesization method with a Hessian reassignment mechanism guided by the diffusion theory to address the key challenge of inaccessible datasets in calculating clients' data Hessians. We then present the novel Federated F-Divergence-Based Aggregation~(\textbf{Fed-FA}) algorithm, which leverages the f-divergence indicator to detect and discard suspicious clients. Extensive empirical results show that Fed-FA outperforms all the parameter distance-based methods in defending against backdoor attacks among various natural language backdoor attack scenarios.

Visual motion processing is essential for humans to perceive and interact with dynamic environments. Despite extensive research in cognitive neuroscience, image-computable models that can extract informative motion flow from natural scenes in a manner consistent with human visual processing have yet to be established. Meanwhile, recent advancements in computer vision (CV), propelled by deep learning, have led to significant progress in optical flow estimation, a task closely related to motion perception. Here we propose an image-computable model of human motion perception by bridging the gap between biological and CV models. Specifically, we introduce a novel two-stages approach that combines trainable motion energy sensing with a recurrent self-attention network for adaptive motion integration and segregation. This model architecture aims to capture the computations in V1-MT, the core structure for motion perception in the biological visual system, while providing the ability to derive informative motion flow for a wide range of stimuli, including complex natural scenes. In silico neurophysiology reveals that our model's unit responses are similar to mammalian neural recordings regarding motion pooling and speed tuning. The proposed model can also replicate human responses to a range of stimuli examined in past psychophysical studies. The experimental results on the Sintel benchmark demonstrate that our model predicts human responses better than the ground truth, whereas the state-of-the-art CV models show the opposite. Our study provides a computational architecture consistent with human visual motion processing, although the physiological correspondence may not be exact.

We propose a new class of generative model that naturally handles data of varying dimensionality by jointly modeling the state and dimension of each datapoint. The generative process is formulated as a jump diffusion process that makes jumps between different dimensional spaces. We first define a dimension destroying forward noising process, before deriving the dimension creating time-reversed generative process along with a novel evidence lower bound training objective for learning to approximate it. Simulating our learned approximation to the time-reversed generative process then provides an effective way of sampling data of varying dimensionality by jointly generating state values and dimensions. We demonstrate our approach on molecular and video datasets of varying dimensionality, reporting better compatibility with test-time diffusion guidance imputation tasks and improved interpolation capabilities versus fixed dimensional models that generate state values and dimensions separately.

Molecular representation learning lays the foundation for drug discovery. However, existing methods suffer from poor out-of-distribution (OOD) generalization, particularly when data for training and testing originate from different environments. To address this issue, we propose a new framework for learning molecular representations that exhibit invariance and robustness against distribution shifts. Specifically, we propose a strategy called ``first-encoding-then-separation'' to identify invariant molecule features in the latent space, which deviates from conventional practices. Prior to the separation step, we introduce a residual vector quantization module that mitigates the over-fitting to training data distributions while preserving the expressivity of encoders. Furthermore, we design a task-agnostic self-supervised learning objective to encourage precise invariance identification, which enables our method widely applicable to a variety of tasks, such as regression and multi-label classification. Extensive experiments on 18 real-world molecular datasets demonstrate that our model achieves stronger generalization against state-of-the-art baselines in the presence of various distribution shifts. Our code is available at https://github.com/HICAI-ZJU/iMoLD.

Autoregressive and Masked Transformers are incredibly effective as generative models and classifiers. While these models are most prevalent in NLP, they also exhibit strong performance in other domains, such as vision. This work contributes to the exploration of transformer-based models in synthetic data generation for diverse application domains. In this paper, we present TabMT, a novel Masked Transformer design for generating synthetic tabular data. TabMT effectively addresses the unique challenges posed by heterogeneous data fields and is natively able to handle missing data. Our design leverages improved masking techniques to allow for generation and demonstrates state-of-the-art performance from extremely small to extremely large tabular datasets. We evaluate TabMT for privacy-focused applications and find that it is able to generate high quality data with superior privacy tradeoffs.

Graph Self-Supervised Learning (GSSL) provides a robust pathway for acquiring embeddings without expert labelling, a capability that carries profound implications for molecular graphs due to the staggering number of potential molecules and the high cost of obtaining labels. However, GSSL methods are designed not for optimisation within a specific domain but rather for transferability across a variety of downstream tasks. This broad applicability complicates their evaluation. Addressing this challenge, we present "Molecular Graph Representation Evaluation" (MOLGRAPHEVAL), generating detailed profiles of molecular graph embeddings with interpretable and diversified attributes. MOLGRAPHEVAL offers a suite of probing tasks grouped into three categories: (i) generic graph, (ii) molecular substructure, and (iii) embedding space properties. By leveraging MOLGRAPHEVAL to benchmark existing GSSL methods against both current downstream datasets and our suite of tasks, we uncover significant inconsistencies between inferences drawn solely from existing datasets and those derived from more nuanced probing. These findings suggest that current evaluation methodologies fail to capture the entirety of the landscape.

When solving decision-making tasks, humans typically depend on information from two key sources: (1) Historical policy data, which provides interaction replay from the environment, and (2) Analytical insights in natural language form, exposing the invaluable thought process or strategic considerations. Despite this, the majority of preceding research focuses on only one source: they either use historical replay exclusively to directly learn policy or value functions, or engaged in language model training utilizing mere language corpus. In this paper, we argue that a powerful autonomous agent should cover both sources. Thus, we propose ChessGPT, a GPT model bridging policy learning and language modeling by integrating data from these two sources in Chess games. Specifically, we build a large-scale game and language dataset related to chess. Leveraging the dataset, we showcase two model examples ChessCLIP and ChessGPT, integrating policy learning and language modeling. Finally, we propose a full evaluation framework for evaluating language model's chess ability. Experimental results validate our model and dataset's effectiveness. We open source our code, model, and dataset at https://github.com/waterhorse1/ChessGPT.

We reveal a one-class homophily phenomenon, which is one prevalent property we find empirically in real-world graph anomaly detection (GAD) datasets, i.e., normal nodes tend to have strong connection/affinity with each other, while the homophily in abnormal nodes is significantly weaker than normal nodes. However, this anomaly-discriminative property is ignored by existing GAD methods that are typically built using a conventional anomaly detection objective, such as data reconstruction. In this work, we explore this property to introduce a novel unsupervised anomaly scoring measure for GAD -- local node affinity-- that assigns a larger anomaly score to nodes that are less affiliated with their neighbors, with the affinity defined as similarity on node attributes/representations. We further propose Truncated Affinity Maximization (TAM) that learns tailored node representations for our anomaly measure by maximizing the local affinity of nodes to their neighbors. Optimizing on the original graph structure can be biased by non-homophily edges(i.e., edges connecting normal and abnormal nodes). Thus, TAM is instead optimized on truncated graphs where non-homophily edges are removed iteratively to mitigate this bias. The learned representations result in significantly stronger local affinity for normal nodes than abnormal nodes. Extensive empirical results on 10 real-world GAD datasets show that TAM substantially outperforms seven competing models, achieving over 10% increase in AUROC/AUPRC compared to the best contenders on challenging datasets. Our code is available at https://github.com/mala-lab/TAM-master/.

Air pollution poses serious health concerns in developing countries, such as India, necessitating large-scale measurement for correlation analysis, policy recommendations, and informed decision-making. However, fine-grained data collection is costly. Specifically, static sensors for pollution measurement cost several thousand dollars per unit, leading to inadequate deployment and coverage. To complement the existing sparse static sensor network, we propose a mobile sensor network utilizing lower-cost PM2.5 sensors mounted on public buses in the Delhi-NCR region of India. Through this exercise, we introduce a novel dataset AirDelhi comprising PM2.5 and PM10 measurements. This dataset is made publicly available, at https://www.cse.iitd.ac.in/pollutiondata, serving as a valuable resource for machine learning (ML) researchers and environmentalists. We present three key contributions with the release of this dataset. Firstly, through in-depth statistical analysis, we demonstrate that the released dataset significantly differs from existing pollution datasets, highlighting its uniqueness and potential for new insights. Secondly, the dataset quality been validated against existing expensive sensors. Thirdly, we conduct a benchmarking exercise (https://github.com/sachin-iitd/DelhiPMDatasetBenchmark), evaluating state-of-the-art methods for interpolation, feature imputation, and forecasting on this dataset, which is the largest publicly available PM dataset to date. The results of the benchmarking exercise underscore the substantial disparities in accuracy between the proposed dataset and other publicly available datasets. This finding highlights the complexity and richness of our dataset, emphasizing its value for advancing research in the field of air pollution.

Modeling interacting dynamical systems, such as fluid dynamics and intermolecular interactions, is a fundamental research problem for understanding and simulating complex real-world systems. Many of these systems can be naturally represented by dynamic graphs, and graph neural network-based approaches have been proposed and shown promising performance. However, most of these approaches assume the underlying dynamics does not change over time, which is unfortunately untrue. For example, a molecular dynamics can be affected by the environment temperature over the time. In this paper, we take an attempt to provide a probabilistic view for time-varying dynamics and propose a model Context-attended Graph ODE (CARE) for modeling time-varying interacting dynamical systems. In our CARE, we explicitly use a context variable to model time-varying environment and construct an encoder to initialize the context variable from historical trajectories. Furthermore, we employ a neural ODE model to depict the dynamic evolution of the context variable inferred from system states. This context variable is incorporated into a coupled ODE to simultaneously drive the evolution of systems. Comprehensive experiments on four datasets demonstrate the effectiveness of our proposed CARE compared with several state-of-the-art approaches.

Masked graph modeling excels in the self-supervised representation learning of molecular graphs. Scrutinizing previous studies, we can reveal a common scheme consisting of three key components: (1) graph tokenizer, which breaks a molecular graph into smaller fragments (\ie subgraphs) and converts them into tokens; (2) graph masking, which corrupts the graph with masks; (3) graph autoencoder, which first applies an encoder on the masked graph to generate the representations, and then employs a decoder on the representations to recover the tokens of the original graph. However, the previous MGM studies focus extensively on graph masking and encoder, while there is limited understanding of tokenizer and decoder. To bridge the gap, we first summarize popular molecule tokenizers at the granularity of node, edge, motif, and Graph Neural Networks (GNNs), and then examine their roles as the MGM's reconstruction targets. Further, we explore the potential of adopting an expressive decoder in MGM. Our results show that a subgraph-level tokenizer and a sufficiently expressive decoder with remask decoding have a \yuan{large impact on the encoder's representation learning}. Finally, we propose a novel MGM method SimSGT, featuring a Simple GNN-based Tokenizer (SGT) and an effective decoding strategy. We empirically validate that our method outperforms the existing molecule self-supervised learning methods. Our codes and checkpoints are available at https://github.com/syr-cn/SimSGT.

Normalizing flows are a class of deep generative models that are especially interesting for modeling probability distributions in physics, where the exact likelihood of flows allows reweighting to known target energy functions and computing unbiased observables. For instance, Boltzmann generators tackle the long-standing sampling problem in statistical physics by training flows to produce equilibrium samples of many-body systems such as small molecules and proteins. To build effective models for such systems, it is crucial to incorporate the symmetries of the target energy into the model, which can be achieved by equivariant continuous normalizing flows (CNFs). However, CNFs can be computationally expensive to train and generate samples from, which has hampered their scalability and practical application. In this paper, we introduce equivariant flow matching, a new training objective for equivariant CNFs that is based on the recently proposed optimal transport flow matching. Equivariant flow matching exploits the physical symmetries of the target energy for efficient, simulation-free training of equivariant CNFs. We demonstrate the effectiveness of flow matching on rotation and permutation invariant many-particle systems and a small molecule, alanine dipeptide, where for the first time we obtain a Boltzmann generator with significant sampling efficiency without relying on tailored internal coordinate featurization. Our results show that the equivariant flow matching objective yields flows with shorter integration paths, improved sampling efficiency, and higher scalability compared to existing methods.

Transformer has shown state-of-the-art performance on various applications and has recently emerged as a promising tool for surrogate modeling of partial differential equations (PDEs). Despite the introduction of linear-complexity attention, applying Transformer to problems with a large number of grid points can be numerically unstable and computationally expensive. In this work, we propose Factorized Transformer (FactFormer), which is based on an axial factorized kernel integral. Concretely, we introduce a learnable projection operator that decomposes the input function into multiple sub-functions with one-dimensional domain. These sub-functions are then evaluated and used to compute the instance-based kernel with an axial factorized scheme. We showcase that the proposed model is able to simulate 2D Kolmogorov flow on a $256\times 256$ grid and 3D smoke buoyancy on a $64\times64\times64$ grid with good accuracy and efficiency. The proposed factorized scheme can serve as a computationally efficient low-rank surrogate for the full attention scheme when dealing with multi-dimensional problems.

Carefully designed activation functions can improve the performance of neural networks in many machine learning tasks. However, it is difficult for humans to construct optimal activation functions, and current activation function search algorithms are prohibitively expensive. This paper aims to improve the state of the art through three steps: First, the benchmark datasets Act-Bench-CNN, Act-Bench-ResNet, and Act-Bench-ViT were created by training convolutional, residual, and vision transformer architectures from scratch with 2,913 systematically generated activation functions. Second, a characterization of the benchmark space was developed, leading to a new surrogate-based method for optimization. More specifically, the spectrum of the Fisher information matrix associated with the model's predictive distribution at initialization and the activation function's output distribution were found to be highly predictive of performance. Third, the surrogate was used to discover improved activation functions in several real-world tasks, with a surprising finding: a sigmoidal design that outperformed all other activation functions was discovered, challenging the status quo of always using rectifier nonlinearities in deep learning. Each of these steps is a contribution in its own right; together they serve as a practical and theoretical foundation for further research on activation function optimization.

Transformers have surpassed RNNs in popularity due to their superior abilities in parallel training and long-term dependency modeling. Recently, there has been a renewed interest in using linear RNNs for efficient sequence modeling. These linear RNNs often employ gating mechanisms in the output of the linear recurrence layer while ignoring the significance of using forget gates within the recurrence. In this paper, we propose a gated linear RNN model dubbed Hierarchically Gated Recurrent Neural Network (HGRN), which includes forget gates that are lower bounded by a learnable value. The lower bound increases monotonically when moving up layers. This allows the upper layers to model long-term dependencies and the lower layers to model more local, short-term dependencies. Experiments on language modeling, image classification, and long-range arena benchmarks showcase the efficiency and effectiveness of our proposed model. The source code is available at https://github.com/OpenNLPLab/HGRN.