ICML 2026 论文列表

International Conference on Machine Learning

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6,341篇论文

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Dispersion Loss Counteracts Embedding Condensation and Improves Generalization in Small Language Models

Chen Liu, Xingzhi Sun, Xi Xiao, Alexandre Van Tassel, Ke Xu, Kristof Reimann, Danqi Liao, Mark Gerstein, Tianyang Wang, Xiao Wang, Smita Krishnaswamy

展开摘要

Large language models (LLMs) achieve remarkable performance through ever-increasing parameter counts, but scaling incurs steep computational costs. To better understand LLM scaling, we study representational differences between LLMs and their smaller counterparts, with the goal of replicating the representational qualities of larger models in smaller models. We observe a geometric phenomenon which we term $\textbf{embedding condensation}$, where token embeddings collapse into a narrow cone-like subspace in some language models. Through systematic analyses across multiple Transformer families, we show that small models such as $\texttt{GPT2}$ and $\texttt{Qwen3-0.6B}$ exhibit severe condensation, whereas larger models such as $\texttt{GPT2-xl}$ and $\texttt{Qwen3-32B}$ are more resistant to this phenomenon. Additional observations show that embedding condensation is not reliably mitigated by knowledge distillation from larger models. To fight against it, we formulate a dispersion loss that explicitly encourages embedding dispersion during training. Experiments demonstrate that it mitigates condensation, recovers dispersion patterns seen in larger models, and yields performance gains across 10 benchmarks. We believe this work offers a principled path toward improving smaller Transformers without additional parameters.

Poster
InvGNN: Learning Invertible Node Representations on Graphs

Giannis Nikolentzos, Dimitrios Kelesis, Nikolaos Nakis

展开摘要

Over the past decade, Graph Neural Networks (GNNs) have become a standard tool for solving machine learning problems on graphs. While many aspects of GNNs have been studied in depth, including their efficiency and expressive power, the invertibility of these models has remained largely unexplored. Standard aggregation functions, such as the mean, max and sum operators, are not invertible, which limits their applicability in tasks requiring invertible transformations. In this work, we introduce an invertible GNN layer. By stacking multiple such layers, we construct fully invertible GNN models, which we refer to as InvGNNs. These models inherit the benefits of invertible neural networks, including low memory usage for deep architectures, exact likelihood computation, and generative modeling capabilities. We demonstrate that InvGNNs can match the expressive power of the 1-dimensional Weisfeiler-Leman algorithm, showing that invertibility does not compromise model expressiveness. On standard graph classification benchmarks, our model performs comparably to other well-established GNNs. Beyond classification, we demonstrate the potential of invertible layers through density estimation tasks, including outlier detection and node feature generation.

Poster
The Bridge-Garden Dilemma in LLM Distillation: Why Mixing Hard and Soft Labels Works

Guanghui Wang, Kaiwen Lv Kacuila, Zhiyong Yang, Zitai Wang, Jin-Wen Wu, Longtao Huang, Qianqian Xu, Qingming Huang

展开摘要

Knowledge distillation (KD) transfers knowledge from a large teacher model to a smaller student. In language modeling, the student is trained either on tokens sampled from the teacher (\textbf{hard labels}) or the teacher’s full next-token distribution (\textbf{soft labels}). Despite soft labels appear strictly richer, we find that mixing hard and soft labels consistently yields better results. Crucially, we show that this gain cannot be explained by closer teacher matching during training. Instead, it comes from reduced exposure bias---the mismatch between training and inference distributions. To explain this phenomenon, we introduce the Bridge–Garden Decomposition theory, which categorizes generation steps into two types: \textit{Bridges}, where the next token must be \textit{exact}, and \textit{Gardens}, where it can be \textit{flexible}. We show that hard-only KD excels in Bridges by avoiding risky deviations, while soft-only KD preserves diversity in Gardens. A hybrid strategy handles both cases and, as a result, reduces exposure bias across the sequence. Guided by this theory, we develop a family of Bridge--Garden hybrid supervision methods that adaptively balance hard and soft labels. Across seven teacher--student pairs (including Qwen, Llama, Gemma, and DeepSeek) and benchmarks in reasoning and coding, our approach outperforms divergence-based and on-policy KD baselines while reducing training cost by \textbf{9.7$\times$}, enabling efficient model compression.

Poster
GKD-Recruiter: Jointly Modeling Social and Task Heterogeneity for Spatial Crowdsourcing via Graph Knowledge Distillation

Yucen Gao, Zhemeng Yu, Zhuoran Li, Jianxiong Guo, Xiaofeng Gao

展开摘要

Social recruitment offers a solution to worker scarcity in Spatial Crowdsourcing (SC) but faces challenges that are often ignored in traditional Influence Maximization. First, task heterogeneity arising from offline execution constraints breaks the interest-implies-participation assumption, as social influence often fails to translate into physical presence. Second, finite task demand creates a saturation trap, a non-submodular setting in which utility drops sharply to zero once demand is met. To bridge these gaps, we propose GKD-Recruiter, a Task-Aware framework designed to maximize Effective Task Satisfaction (ETS). We explicitly model the complex worker-task affinity via a heterogeneous graph and capture directional social influence using a novel Influential GAT. To robustly fuse these distinct signals, we introduce a Graph Knowledge Distillation mechanism. Furthermore, we employ Rainbow DQN to navigate the non-submodular combinatorial search space, avoiding the local optima that trap greedy heuristics. Extensive experiments on real-world datasets demonstrate that GKD-Recruiter significantly outperforms state-of-the-art baselines in both solution quality and inference efficiency. The code is available at https://github.com/GaoYucen/GKD-Recruiter.

Poster
GRASP: Graph Reasoning via Agentic Solving and Probing of LLMs

Xiaojun Guo, Mingxue Tian, Chenheng Zhang, Xiaohan Wang, Jiajun Chai, Guojun Yin, Wei Lin, Yifei Wang, Yisen Wang

展开摘要

Integrating graph knowledge into Large Language Models (LLMs) via passive representation faces critical bottlenecks: limited context windows, unreliable numerical computation, and structural hallucinations. To solve this, we propose **GRASP** (**G**raph **R**easoning via **A**gentic **S**olving and **P**robing), shifting the paradigm from passive ingestion to proactive agentic exploration. By interleaving Neighbor Retrieval for on-demand probing with Code Interpreter as a deterministic solver, GRASP enables LLMs to autonomously navigate and compute over complex topologies. We employ a staged reinforcement learning strategy (GRPO) that transitions from visible tuning to a structure-blind environment, forcing the agent to develop genuine topological awareness. Evaluated on multi-domain graph reasoning benchmarks, our 4B model achieves a 53.06% average performance boost, surpassing SOTA baselines like DeepSeek-V3.2 and successfully generalizing to unseen tasks, with high potential for tackling sampling on million-node graphs and solving Hard-level LeetCode graph problems. Our implementation is open-sourced at https://github.com/PKU-ML/GRASP, with models hosted on Huggingface collection https://huggingface.co/collections/PKU-ML/grasp.

Poster
On the Spectral Unreachability of Brain Graph Learning

Jiaming Zhuo, Shuai Zhai, Ziyi Ma, Kun Fu, Chuan Wang, Di Jin, Zhen Wang, Xiaochun Cao, Huazhu Fu, Liang Yang

展开摘要

Brain network classification is pivotal for diagnosing neurological disorders, yet identifying interpretable functional biomarkers fundamentally relies on precise parcellation. Unfortunately, conventional deep graph encoders applied to brain networks suffer from a critical theoretical limitation termed Spectral Unreachability. Through graph spectral analysis, this paper demonstrates that standard coupled encoder-pooling architectures inevitably oversmooth node representations, corrupting the high-frequency topological signals strictly required to delineate sharp module boundaries. To provide a structural remedy, the Hierarchical Spectral Parcellation Network (HiSP-Net) is proposed, which structurally decouples partition learning from feature smoothing via a project-then-align paradigm. Specifically, HiSP-Net maps representations directly into a partition space using a topology-agnostic projection block to preserve all-frequency details, while a Topology-Aware Alignment regularizer subsequently enforces spatial coherence. Extensive evaluations demonstrate that HiSP-Net consistently outperforms state-of-the-art baselines in classification, while successfully extracting stable and structurally coherent functional biomarkers. Source code is available at https://github.com/Kevin-916/HiSP-Net-demo/.

Poster
On the Origin of Neural Scaling Laws: from Random Graphs to Natural Language

Maissam Barkeshli, Alberto Alfarano, Andrey Gromov

展开摘要

Scaling laws have played a major role in modern AI, providing predictive power over how model performance will improve with increasing resources. This has spurred intense interest in their origin, with a common suggestion being that they arise from power laws already present in the data. Here we study scaling laws for transformers trained to predict random walks on graphs with tunable complexity. We show that this simplified setting already yields scaling laws even in the absence of power laws in the data correlations. We further consider dialing down the complexity of language by training on sequences sampled from increasingly simplified generative language models, from 4,2,1-layer transformer language models down to language bigrams, revealing a monotonic evolution of the scaling exponents. Our results also include scaling laws obtained from training on random walks on random graphs drawn from Erdös-Renyi and scale-free Barabási-Albert ensembles. Finally, we revisit scaling laws for language modeling, demonstrating that several essential results can be reproduced using 2 layer transformers with context length of 100, demonstrate an alternative method for obtaining compute optimal curves, and provide preliminary evidence that maximal update parameterization may be more parameter efficient than standard parameterization.

Spotlight
Generative Representation Learning on Hyper-relational Knowledge Graphs via Masked Discrete Diffusion

Jaejun Lee, Seheon Kim, Joyce Jiyoung Whang

展开摘要

Hyper-relational knowledge graphs (HKGs) effectively represent complex facts. While inferring new knowledge in HKGs is a critical problem, current methods cast it as a simple link prediction, assuming that nearly all entities and relations within a fact are known, leaving only a single blank to be filled. However, this restricted assumption may not hold in real-world scenarios in which multiple, or even all, constituent components of a fact may be missing simultaneously. To bridge this gap, we introduce a task called fact generation: generating a valid hyper-relational fact from an arbitrarily masked query, i.e., completing a partially observed fact or generating a fact from scratch. We propose KREPE, the first generative representation learning method for HKGs that learns to model the probability distributions of missing components conditioned on the local fact components and global structure of HKGs via a masked discrete diffusion. KREPE models both the intra-fact dependencies by contextual message passing and inter-fact correlations by aggregating stochastically sampled contexts. KREPE seamlessly unifies link prediction and fact generation within a single training framework, achieving state-of-the-art performance on standard HKG link prediction benchmarks and outperforming LLM-based baselines in generating novel and correct facts.

Poster
How can embedding models bind concepts?

Arnas Uselis, Darina Koishigarina, Seong Joon Oh

展开摘要

Humans easily determine which color belongs to which shape in multi-object scenes, an ability known as concept binding. Vision–language embedding models such as CLIP struggle with binding: they recognize individual concepts but fail to represent which concepts form which objects. Although CLIP behaves like a bag-of-concepts model in cross-modal retrieval, object information is recoverable from its image and text embeddings separately. We study this tension through the binding function, which maps concepts to scene embeddings. We find that scene embeddings decompose additively into object representations, explaining why uni-modal probes can recover object information. However, CLIP’s binding function is high-complexity, which likely prevents the image and text encoders from learning a shared binding mechanism that generalizes to unseen concept combinations. We then ask whether this limitation is fundamental. We show that it is not. In controlled transformer models trained from scratch, binding generalization emerges with sufficient data coverage. These models learn low-complexity binding functions characterized by multiplicative interactions between concepts, enabling systematic generalization.

Spotlight
Use What You Know: Causal Foundation Models with Partial Graphs

Arik Reuter, Anish Dhir, Cristiana Diaconu, Jake Robertson, Ole Ossen, Frank Hutter, Adrian Weller, Mark van der Wilk, Bernhard Schölkopf

展开摘要

Estimating causal quantities traditionally relies on bespoke estimators tailored to specific assumptions. Recently proposed Causal Foundation Models (CFMs) promise a more unified approach by amortising causal discovery and inference in a single step. However, in their current state, they do not allow for the incorporation of any domain knowledge, which can lead to suboptimal predictions. We bridge this gap by introducing methods to condition CFMs on causal information, such as the causal graph or more readily available ancestral information. When access to complete causal graph information is too strict a requirement, our approach also effectively leverages partial causal information. We systematically evaluate conditioning strategies and find that injecting learnable biases into the attention mechanism is the most effective method to utilise full and partial causal information. Our experiments show that this conditioning allows a general-purpose CFM to match the performance of specialised models trained on specific causal structures. Overall, our approach addresses a central hurdle on the path towards all-in-one causal foundation models: the capability to answer causal queries in a data-driven manner while effectively leveraging any amount of domain expertise.

Poster
Backjump-on-Graph: Empowering Large Language Models with Reinforced Retrospective Exploration for Agentic Knowledge Graph Reasoning

Yunqi Zhang, Shiqi Yan, Zhenzhao Yuan, Wenrui Liang, Yangming Liu, Zhixiao Qi, Tianyi Zhang, Shijie Zhang, Wei-Qiang Zhang, Yongfeng Huang, Haixin Duan, Shuai Chen, Yubo Chen

展开摘要

Grounding Large Language Models (LLMs) in Knowledge Graphs (KGs) has shown significant promise for complex Question Answering (QA) tasks. Since LLMs' limited context window cannot accommodate the sheer volume of large-scale KGs, existing work usually utilizes agents to reason on real-world KGs, which follows reasoning paths derived from the queries step by step. However, the mismatch between query-derived paths and the KG's structure, stemming from users' lack of schema knowledge, usually leads the agents into dead ends. To address this problem, in this paper, we propose Backjump-on-Graph (BoG), a novel framework that empowers LLMs to retrospectively explore alternative reasoning paths at dead ends. We first propose to formalize each reasoning step with four atomic operations to create a structural scaffold that allows LLMs to revert to historical status. Next, we fine-tune the LLM with synthetic data containing the above atomic operations to instill basic backjump abilities. Finally, we leverage reinforcement learning and propose a hybrid reward function, which penalizes redundant transitions and promotes correct answers, to optimize the timing and landing nodes of backjumping. Extensive experiments on several KGQA benchmark datasets demonstrate the effectiveness of our BoG method.

Poster
Torus Graphs for Large Scale Neural Phase Analysis

Jack Goffinet, Casey Hanks, David Carlson

展开摘要

Oscillatory neural signals such as electroencephalography (EEG) and local field potentials (LFPs) show phase relationships that coordinate communication across brain regions. Modern recordings capture hundreds of channels across many frequency bins, yet standard phase analyses are restricted to only a few variables. The Torus Graph (TG) model, an exponential-family distribution over phases whose univariate and pairwise potentials generalize von Mises distributions, infers principled structure among oscillations but models only static, undirected dependencies and is limited to $\sim \! 100$ variables because its score matching inference scales as $\mathcal{O}(d^{6})$. We introduce a stochastic score matching procedure that reduces the per-iteration cost to $\mathcal{O}(d^{2})$, enabling inference on datasets with thousands of variables. This scalable foundation supports analyses of 1,860 frequency-phase features from multi-electrode LFPs and enables two extensions previously inaccessible to TGs or classical circular statistics: (i) a TG Hidden Markov Model capturing state-dependent phase-coupling changes (e.g., spindle-related states during sleep) and (ii) an autoregressive TG inferring directional interactions via transfer-entropy estimation. Applied to LFP recordings, these models reveal state-dependent phase-interaction patterns between wakefulness and NREM sleep. Together, they enable systematic, large-scale mapping of dynamic and directional phase relationships across brain and cognitive states.

Poster
INDUCTION: Finite-Structure Concept Synthesis in First-Order Logic

Serafim Batzoglou

展开摘要

Induction is the search for a general rule that explains observations. We study logical induction in finite relational worlds: each problem gives small structures over a fixed vocabulary, labels objects belonging to an unknown unary concept, and asks for one first-order formula φ(x) that accounts for those labels across worlds. Finite domains make formulas mechanically checkable by exact evaluation and SMT. We introduce INDUCTION, a benchmark for finite-structure concept synthesis with three regimes: FULLOBS (full observation), where all facts are observed; CI (contrastive induction), where YES/NO worlds require discriminative hypotheses; and EC (existential completion), where validity is defined by world-local completion of unknown facts. We evaluate frontier language models, include symbolic synthesis baselines, and score both validity and formula size. Prompted models show real but incomplete capability, with sharp difficulty gradients and hard structural families. Held-out evaluation shows that compact formulas generalize far better than bloated ones; parsimony separates concept recovery from finite-world fit.

Spotlight
LEGO: An LLM-Enabled Hierarchical Optimizer for Tensor Computation Graphs with Structure-Aware Search and Compositional Synthesis

Ruiyuan Xu, Shuoming Zhang, Guangli Li, Qiuchu Yu, Rui Zhang, Yangyu Zhang, Hao Qian, Chunwei Xia, Jiacheng Zhao, Chenxi Wang, Xiaobing Feng, Jingling Xue, Huimin Cui

展开摘要

Automating end-to-end GPU kernel generation with Large Language Models (LLMs) faces a critical tension between global performance and exploration efficiency. We present LEGO, a hierarchical framework that resolves this trade-off via a parallel multi-agent search over a recursive AND-OR FusionTree. LEGO synergizes two complementary flows: Top-Down Construction decomposes complex graphs into valid, context-isolated sub-problems to guarantee correctness and enable parallel exploration, while Bottom-Up Mutation speculatively fuses verified sub-plans to recover global locality for peak performance. This bi-directional mechanism effectively prunes the search space to avoid repetitive unguided sampling, while naturally parallelizing exploration and enabling the discovery of sophisticated fusion strategies. Evaluations demonstrate that LEGO achieves 2.18×–13.48× speedups over PyTorch Eager and, compared to monolithic baselines, reduces end-to-end exploration time by up to 2.47× and token consumption by up to 7×, across diverse end-to-end models.

Poster
MultiHal: Multilingual Dataset for Knowledge-Graph Grounded Evaluation of LLM Hallucinations

Ernests Lavrinovics, Russa Biswas, Katja Hose, Johannes Bjerva

展开摘要

Large Language Models (LLMs) have inherent limitations of faithfulness and factuality, commonly referred to as hallucinations. Several benchmarks have been developed that provide a test bed for factuality evaluation within the context of English-centric datasets, while relying on supplementary informative context like web links or text passages but ignoring the available structured factual resources. To this end, Knowledge Graphs (KGs) have been identified as a useful aid for hallucination mitigation, as they provide a structured way to represent the facts about entities and their relations with minimal linguistic overhead. We bridge the lack of KG paths and multilinguality for factual language modeling within the existing hallucination evaluation benchmarks and propose a KG-based multilingual, multihop benchmark called MultiHal framed for generative text evaluation. As part of our data collection pipeline, we mined 140k KG-paths from open-domain KGs, from which we pruned noisy KG-paths, curating a high-quality subset of 25.9k. Our baseline evaluation shows an absolute scale improvement by approximately 0.12 to 0.36 points for the semantic similarity score, 0.16 to 0.36 for NLI entailment and 0.29 to 0.42 for hallucination detection in KG-RAG over vanilla QA across multiple languages and multiple models, demonstrating the potential of KG integration. We anticipate MultiHal will foster future research towards several graph-based hallucination mitigation and fact-checking tasks.

Poster
L2G-NET: Local to Global Spectral Graph Neural Networks via Cauchy Factorizations

Samuel Fernandez, Eduardo Pavez, Antonio Ortega

展开摘要

Despite their theoretical advantages, spectral methods based on the graph Fourier transform (GFT) are seldom used in graph neural networks (GNNs) due to the cost of computing the eigenbasis and the lack of vertex-domain locality in the resulting representations. As a result, most GNNs rely on local approximations such as polynomial Laplacian filters or message passing, which limit their ability to model long-range dependencies. In this paper, we introduce an exact factorization of the GFT into operators acting on subgraphs, which are then combined via a sequence of Cauchy matrices. Building on this factorization, we propose a new class of spectral GNNs, termed L2G-Net (Local to Global Net). Unlike existing spectral methods, which are either fully global (when using the GFT) or local (when using polynomial filters), L2G-Net operates by processing the spectral representations of subgraphs and then combining them via structured matrices. Our algorithm avoids full eigendecompositions, exploiting graph topology to construct the factorization with quadratic complexity in the number of nodes, scaled by the maximum cut size between subgraphs. Experiments stressing long-range dependencies on large graphs show that L2G-Net scales to regimes out of reach for the standard GFT, and is competitive with state-of-the-art methods with orders of magnitude fewer learnable parameters.

Spotlight
A Graph Foundation Model with Cross-Modal Alignment and Modality-Aware Expert Fusion for Multi-Modal Graphs

Dongxiao He, Ankang Yang, Jitao Zhao, Di Jin

展开摘要

Graph Foundation Models (GFMs) aim to learn universal patterns through large-scale pretraining on diverse graphs and generalize to open-world scenarios. While GFMs have garnered significant attention, existing works primarily focus on sigle-modal graphs. However, many real-world graphs are multimodal, consisting of structures alongside diverse features derived from modalities such as text and images. To date, exploration into Multimodal Graph Foundation Models (MGFMs) remains limited. Incorporating multimodal data provides a more comprehensive view, allowing models to learn richer semantics, thereby advancing GFMs. We are therefore motivated to explore MGFMs, where the core challenge lies in synergistically encoding structures and multimodal features to achieve effective cross-modal alignment and fusion. To this end, we propose a graph foundation model with Cross-modal Alignment and Modality-aware Expert fusion, CAME. Specifically, CAME first generates graph embeddings for each individual modality. We then introduce a multimodal multi-expert encoding mechanism, which includes a dimension-wise routing strategy to fuse multimodal information. Finally, we employ a cross-modal contrastive loss to train CAME, enabling the adaptive alignment and fusion across different modalities. Extensive experiments demonstrate the effectiveness of CAME across multiple tasks and diverse multimodal graph datasets.

Poster
Semi-Supervised Noise Adaptation: Transferring Knowledge from Noise Domain

Yuan Yao, Jin Song, Huixia Li, Tongtong Yuan, Jiaqi Wu, Yu Zhang

展开摘要

Transfer learning aims to facilitate the learning of a target domain by transferring knowledge from a source domain. The source domain typically contains semantically meaningful samples (*e.g.*, images) to facilitate effective knowledge transfer. However, a recent study observes that the noise domain constructed from simple distributions (*e.g.*, Gaussian distributions) can serve as a surrogate source domain in the semi-supervised setting, where only a small proportion of target samples are labeled while most remain unlabeled. Based on this surprising observation, we formulate a novel problem termed *Semi-Supervised Noise Adaptation* (SSNA), which aims to leverage a synthetic noise domain to improve the generalization of the target domain. To address this problem, we first establish a generalization bound characterizing the effect of the noise domain on generalization, based on which we propose a Noise Adaptation Framework (NAF). Extensive experiments demonstrate that NAF effectively leverages the noise domain to tighten the generalization bound of the target domain, leading to improved performance. The codes are available at https://github.com/AIResearch-Group/SSNA.

Poster
Finding the Minimal Parameter Budget for Implicit Reasoning: A Data Complexity Driven Scaling Law for Language Models

Xinyi Wang, Shawn Tan, Shenbo Xu, Mingyu Jin, William Yang Wang, Rameswar Panda, Yikang Shen

展开摘要

Reasoning is a core capability of language models (LMs), yet it remains unclear how much model capacity is necessary to support reasoning during pretraining. In this work, we study the minimal parameter budget required for implicit reasoning, defined as the ability to infer new facts from learned knowledge without explicit chain-of-thought supervision. To isolate this phenomenon, we pretrain LMs from scratch in a controlled synthetic environment that mimics the structure and distribution of real-world knowledge graphs, and evaluate their ability to complete missing edges via multi-hop inference. From both a theoretical and an empirical perspective, we identify a scaling law linking this optimal parameter budget to a graph search entropy measure. Across a wide range of model sizes, training steps, and graph complexities, we show that an optimally sized language model can reliably reason over approximately 0.008 bits of information per parameter at most. Our results characterize the minimal sufficient capacity for implicit reasoning during pretraining. Our findings provide principled guidance for matching model size to data complexity and offer new insights into the scaling behavior of reasoning in large language models.

Poster
Geometry-Guided Generative Representation for Functional Brain Graphs

Subati Abulikemu, Tiago Azevedo, Michail Mamalakis, John Suckling

展开摘要

In network neuroscience, functional brain systems are often characterized using separate yet related graph-theoretic or spectral descriptors, overlooking how these properties covary and partially overlap across individuals and conditions. We anticipate that dense, weighted functional connectivity graphs lie on a low-dimensional latent geometry along which both topological and spectral structures vary smoothly at the population level. Although graph-based deep learning offers a powerful framework for modeling these brain connectomes, supervised approaches are constrained by the limited availability of labeled data. Existing unsupervised graph representation methods also typically focus on node-level embeddings, which are limited in capturing compact graph-level representations that preserve information from dense functional connectomes. To address these gaps, we learn compact brain graph representations using a graph transformer autoencoder, where domain-specific, aligned functional gradient geometry provides an inductive bias to guide learning. Despite being trained in a fully unsupervised manner, our approach meaningfully separates cognitive states and enables decoding of visual stimuli, with performance further improved by incorporating neural dynamics. In parallel, to enable generation of synthetic brain graphs, we fit a diffusion model to the learned latent representation and decode samples back to dense connectomes.

Poster