ICLR 2024 Papers

International Conference on Learning Representations

Decision breakdown

2,260papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    863.8%
  • Spotlight
    36716.2%
  • Poster
    1,80780.0%

Browse all papers

EBMDock: Neural Probabilistic Protein-Protein Docking via a Differentiable Energy Model

Huaijin Wu, Wei Liu, Yatao Bian, Jiaxiang Wu, Nianzu Yang, Junchi Yan

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Protein complex formation, a pivotal challenge in contemporary biology, has recently gained interest from the machine learning community, particularly concerning protein-ligand docking tasks. In this paper, we delve into the equally crucial but comparatively under-investigated domain of protein-protein docking. Specifically, we propose a geometric deep learning framework, termed EBMDock, which employs statistical potential as its energy function. This approach produces a probability distribution over docking poses, such that the identified docking pose aligns with a minimum point in the energy landscape. We employ a differential algorithm grounded in Langevin dynamics to efficiently sample from the docking pose distribution. Additionally, we incorporate energy-based training using contrastive divergence, enhancing both performance and stability. Empirical results demonstrate that our approach achieves superior performance on two benchmark datasets DIPS and DB5.5. Furthermore, the results suggest EBMDock can serve as an orthogonal enhancement to existing methods.

Poster
Faithful Rule Extraction for Differentiable Rule Learning Models

Xiaxia Wang, David Jaime Tena Cucala, Bernardo Cuenca Grau, Ian Horrocks

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There is increasing interest in methods for extracting interpretable rules from ML models trained to solve a wide range of tasks over knowledge graphs (KGs), such as KG completion, node classification, question answering and recommendation. Many such approaches, however, lack formal guarantees establishing the precise relationship between the model and the extracted rules, and this lack of assurance becomes especially problematic when the extracted rules are applied in safety-critical contexts or to ensure compliance with legal requirements. Recent research has examined whether the rules derived from the influential Neural-LP model exhibit soundness (or completeness), which means that the results obtained by applying the model to any dataset always contain (or are contained in) the results obtained by applying the rules to the same dataset. In this paper, we extend this analysis to the context of DRUM, an approach that has demonstrated superior practical performance. After observing that the rules currently extracted from a DRUM model can be unsound and/or incomplete, we propose a novel algorithm where the output rules, expressed in an extension of Datalog, ensure both soundness and completeness. This algorithm, however, can be inefficient in practice and hence we propose additional constraints to DRUM models facilitating rule extraction, albeit at the expense of reduced expressive power.

Poster
Logical Languages Accepted by Transformer Encoders with Hard Attention

Pablo Barcelo, Alexander Kozachinskiy, Anthony Widjaja Lin, Vladimir Podolskii

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We contribute to the study of formal languages that can be recognized by transformer encoders. We focus on two self-attention mechanisms: (1) UHAT (Unique Hard Attention Transformers) and (2) AHAT (Average Hard Attention Transformers). UHAT encoders are known to recognize only languages inside the circuit complexity class ${\sf AC}^0$, i.e., accepted by a family of poly-sized and depth-bounded boolean circuits with unbounded fan-ins. On the other hand, AHAT encoders can recognize languages outside ${\sf AC}^0$), but their expressive power still lies within the bigger circuit complexity class ${\sf TC}^0$, i.e., ${\sf AC}^0$-circuits extended by majority gates. We first show a negative result that there is an ${\sf AC}^0$-language that cannot be recognized by an UHAT encoder. On the positive side, we show that UHAT encoders can recognize a rich fragment of ${\sf AC}^0$-languages, namely, all languages definable in first-order logic with arbitrary unary numerical predicates. This logic, includes, for example, all regular languages from ${\sf AC}^0$. We then show that AHAT encoders can recognize all languages of our logic even when we enrich it with counting terms. Using these results, we obtain a characterization of which counting properties are expressible by UHAT and AHAT, in relation to regular languages.

Poster
Phenomenal Yet Puzzling: Testing Inductive Reasoning Capabilities of Language Models with Hypothesis Refinement

Linlu Qiu, Liwei Jiang, Ximing Lu, Melanie Sclar, Valentina Pyatkin, Chandra Bhagavatula, bailin wang, Yoon Kim, Yejin Choi, Nouha Dziri, Xiang Ren

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The ability to derive underlying principles from a handful of observations and then generalize to novel situations---known as inductive reasoning---is central to human intelligence. Prior work suggests that language models (LMs) often fall short on inductive reasoning, despite achieving impressive success on research benchmarks. In this work, we conduct a systematic study of the inductive reasoning capabilities of LMs through $\textit{iterative hypothesis refinement}$, a technique that more closely mirrors the human inductive process than standard input-output prompting. Iterative hypothesis refinement employs a three-step process: proposing, selecting, and refining hypotheses in the form of textual rules. By examining the intermediate rules, we observe that LMs are phenomenal $\textit{hypothesis proposers}$ (i.e., generating candidate rules), and when coupled with a (task-specific) symbolic interpreter that is able to systematically filter the proposed set of rules, this hybrid approach achieves strong results across inductive reasoning benchmarks that require inducing causal relations, language-like instructions, and symbolic concepts. However, they also behave as puzzling $\textit{inductive reasoners}$, showing notable performance gaps between rule induction (i.e., identifying plausible rules) and rule application (i.e., applying proposed rules to instances), suggesting that LMs are proposing hypotheses without being able to actually apply the rules. Through empirical and human analyses, we further reveal several discrepancies between the inductive reasoning processes of LMs and humans, shedding light on both the potentials and limitations of using LMs in inductive reasoning tasks.

Oral
COLEP: Certifiably Robust Learning-Reasoning Conformal Prediction via Probabilistic Circuits

Mintong Kang, Nezihe Merve Gürel, Linyi Li, Bo Li

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Conformal prediction has shown spurring performance in constructing statistically rigorous prediction sets for arbitrary black-box machine learning models, assuming the data is exchangeable. However, even small adversarial perturbations during the inference can violate the exchangeability assumption, challenge the coverage guarantees, and result in a subsequent decline in empirical coverage. In this work, we propose a certifiably robust learning-reasoning conformal prediction framework (COLEP) via probabilistic circuits, which comprise a data-driven learning component that trains statistical models to learn different semantic concepts, and a reasoning component that encodes knowledge and characterizes the relationships among the trained models for logic reasoning. To achieve exact and efficient reasoning, we employ probabilistic circuits (PCs) within the reasoning component. Theoretically, we provide end-to-end certification of prediction coverage for COLEP in the presence of $\ell_2$ bounded adversarial perturbations. We also provide certified coverage considering the finite size of the calibration set. Furthermore, we prove that COLEP achieves higher prediction coverage and accuracy over a single model as long as the utilities of knowledge models are non-trivial. Empirically, we show the validity and tightness of our certified coverage, demonstrating the robust conformal prediction of COLEP on various datasets, including GTSRB, CIFAR10, and AwA2. We show that COLEP achieves up to 12% improvement in certified coverage on GTSRB, 9% on CIFAR-10, and 14% on AwA2.

Poster
Generalized Neural Sorting Networks with Error-Free Differentiable Swap Functions

Jungtaek Kim, Jeongbeen Yoon, Minsu Cho

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Sorting is a fundamental operation of all computer systems, having been a long-standing significant research topic. Beyond the problem formulation of traditional sorting algorithms, we consider sorting problems for more abstract yet expressive inputs, e.g., multi-digit images and image fragments, through a neural sorting network. To learn a mapping from a high-dimensional input to an ordinal variable, the differentiability of sorting networks needs to be guaranteed. In this paper we define a softening error by a differentiable swap function, and develop an error-free swap function that holds a non-decreasing condition and differentiability. Furthermore, a permutation-equivariant Transformer network with multi-head attention is adopted to capture dependency between given inputs and also leverage its model capacity with self-attention. Experiments on diverse sorting benchmarks show that our methods perform better than or comparable to baseline methods.

Poster
Less is More: One-shot Subgraph Reasoning on Large-scale Knowledge Graphs

Zhanke Zhou, Yongqi Zhang, Jiangchao Yao, Quanming Yao, Bo Han

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To deduce new facts on a knowledge graph (KG), a link predictor learns from the graph structure and collects local evidence to find the answer to a given query. However, existing methods suffer from a severe scalability problem due to the utilization of the whole KG for prediction, which hinders their promise on large scale KGs and cannot be directly addressed by vanilla sampling methods. In this work, we propose the one-shot-subgraph link prediction to achieve efficient and adaptive prediction. The design principle is that, instead of directly acting on the whole KG, the prediction procedure is decoupled into two steps, i.e., (i) extracting only one subgraph according to the query and (ii) predicting on this single, query dependent subgraph. We reveal that the non-parametric and computation-efficient heuristics Personalized PageRank (PPR) can effectively identify the potential answers and supporting evidence. With efficient subgraph-based prediction, we further introduce the automated searching of the optimal configurations in both data and model spaces. Empirically, we achieve promoted efficiency and leading performances on five large-scale benchmarks. The code is publicly available at: https://github.com/tmlr-group/one-shot-subgraph.

Poster
Differentiable Euler Characteristic Transforms for Shape Classification

Ernst Röell, Bastian Rieck

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The _Euler Characteristic Transform_ (ECT) is a powerful invariant, combining geometrical and topological characteristics of shapes and graphs. However, the ECT was hitherto unable to learn task-specific representations. We overcome this issue and develop a novel computational layer that enables learning the ECT in an end-to-end fashion. Our method, the _Differentiable Euler Characteristic Transform_ (DECT) is fast and computationally efficient, while exhibiting performance on a par with more complex models in both graph and point cloud classification tasks. Moreover, we show that this seemingly simple statistic provides the same topological expressivity as more complex topological deep learning layers.

Poster