NeurIPS 2026 论文列表

Conference on Neural Information Processing Systems

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6,437篇论文

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Malicious Node Injection: A Transferable Adversarial Attack on GNN Fairness

Haotian Zhang, He Huang, Shuang Cui, Yu-e Sun

展开摘要

Graph Neural Networks (GNNs) have shown remarkable effectiveness across diverse graph-related tasks. However, existing studies reveal that their fairness is highly vulnerable to adversarial manipulation, which can substantially exacerbate inherent biases toward sensitive attributes, such as gender in demographic prediction. Although prior work has shown that fairness poisoning attacks can be launched via malicious node injection, whether this strategy can support the more challenging fairness evasion attacks remains open. Moreover, existing methods have not directly addressed fairness attacks on multi-class datasets with multi-valued sensitive attributes. To bridge this gap, we propose a universal fairness attack framework (UFA) that injects malicious nodes to perform both poisoning and evasion attacks against GNNs while minimally affecting model utility. UFA first identifies nodes most susceptible to being pushed across the decision boundary. It then targets core mechanisms shared by diverse GNN architectures to manipulate node representations, thereby maximizing outcome disparities across sensitive groups. Comprehensive experiments on five real-world datasets demonstrate the effectiveness of UFA. By injecting fewer than 0.2\% malicious nodes, UFA severely degrades the fairness of both mainstream and fairness-aware GNNs, proving effective in both poisoning and evasion settings. Our findings expose the fragility of fairness in GNNs and underscore the urgent need for robust fairness-aware models.

Poster
Making Open-Source Text LLM Watermarks Durable Against Merging

Luisa Scharff, Thibaud Gloaguen, Robin Staab, Martin Vechev

展开摘要

Open-source LLMs (OSMs) are reaching near state-of-the-art performance, prompting prior works to trace the text they generate by embedding text watermarking algorithms directly into their weights. Yet, OSMs are subject to post-training modifications, which has been shown to remove the watermark. Model merging in particular, a prominent method used for combining expert knowledge and preventing catastrophic forgetting, strongly removes such OSMs watermarks. A key question is how to enable OSM watermarks that survive subsequent merging. In this work, we show for the first time how to design an OSM watermark that is durable against model merging. We propose Merge-Adversarial Training, an adversarial training algorithm to distill text watermarks into model weights while being robust to subsequent model merging. Our approach consistently outperforms all baselines (e.g. with SLERP up to +51 percentage points (pp) TPR@1%FPR with +25 pp on average) while preserving downstream capabilities. We also for the first time evaluate OSM watermarks against realistic merge scenarios, representing common use-cases such as combining expert capabilities or preventing catastrophic forgetting, and with 3 prominent merging algorithms. More broadly, our findings suggest that adversarial training is a reliable approach for increasing OSM watermark durability against post-training modifications.

Poster
Make Each Token Count: Towards Improving Long-Context Performance with KV Cache Eviction

Ngoc Bui, Trung Hieu Nguyen, Arman Cohan, Rex Ying

展开摘要

The key--value (KV) cache is a major bottleneck in long-context inference, where memory and computation grow with sequence length. Existing KV eviction methods reduce this cost but typically degrade performance relative to full-cache inference. Our key insight is that full-cache attention is not always optimal: in long contexts, irrelevant tokens can dilute attention away from useful evidence, so selective, learnable eviction can improve generation rather than merely approximate the full cache. We introduce a global retention-based KV eviction method that learns each token's future utility under a unified memory budget. Lightweight retention gates assign utility scores to cached KV entries, and a shared final scoring projection calibrates these scores across all layers and heads. This enables a single global eviction policy in which tokens from different layers, heads, and modalities compete directly for cache capacity. We further provide theoretical analysis showing that preferentially retaining useful tokens reduces attention dilution, and we justify geometric retention as a query-agnostic proxy for future utility. Across long-context language and vision--language benchmarks, our method substantially reduces KV memory while matching or surpassing full-cache inference. These results suggest that learned, globally calibrated KV eviction is not only a compression technique, but also a mechanism for improving long-context reasoning.

Poster
Majority-of-Three is an Optimal PAC Learner

Grigoris Velegkas

展开摘要

Finding the optimal sample complexity of realizable PAC learning was a major open problem in learning theory, which was settled by the breakthrough result of Hanneke (2016), building on prior work by Simon (2015). Hanneke's algorithm is quite involved and requires training $\text{poly}(n)$ Empirical Risk Minimizers (ERMs) on carefully crafted subsets of the data. Since using a single ERM call is provably suboptimal, recent work by Aden-Ali (2024) proposed the majority-of-three ERMs as a candidate for the *simplest* optimal PAC learner, and established its optimality in the *in-expectation* regime. Their main open question was whether this algorithm is optimal in the classical *high-probability* regime. In this work, building on their ideas, we answer this question affirmatively.

Poster
Majority Bit-Aware Watermarking for Large Language Models

Jiahao Xu, Rui Hu, Olivera Kotevska, Zikai Zhang

展开摘要

The growing deployment of Large Language Models (LLMs) has raised concerns about their misuse in generating harmful or deceptive content. To address this issue, watermarking methods have been proposed to embed identifiable multi-bit messages into generated text for misuse tracing. However, existing methods often suffer from a fundamental trade-off between text quality and decoding accuracy. In particular, they have to restrict the size of the preferred token set (i.e., green list) during encoding to maintain a detectable watermark signal for decoding, which inevitably degrades generation quality. To improve this trade-off, we propose a novel message encoding paradigm called \textit{majority bit-aware encoding}, which relaxes the watermark signal strength from the green list size. This strategy allows for a strong watermark signal to be preserved in generated texts even when using a large green list. We introduce two instantiations of this paradigm: MajorMark and MajorMark$^{+}$, where the latter is specifically optimized for long messages. Extensive experiments on state-of-the-art LLMs demonstrate that our methods achieve higher decoding accuracy and superior text quality compared to prior baselines. The code of the proposed methods is available \href{https://anonymous.4open.science/r/MajorMark}{here} for review.

Poster
MainFL: Intertemporal Data Valuation for Robust Auction-based Federated Learning

Bangqi Pan, Yun Xin, Jianfeng Lu, Gang Li, Shuqin Cao, Zhou Chendi

展开摘要

Auction-based Federated Learning (AFL) provides a principled framework for incentivizing data owners and allocating decentralized training resources to data consumers. However, practical AFL systems face a coupled valuation and allocation challenge: data quality is uncertain before training, post-training feedback can be strategically distorted, and heterogeneous deadlines render late model updates ineffective for learning. We propose MainFL, an incentive-compatible intertemporal data valuation mechanism for robust auction-based federated learning. MainFL integrates three components: (i) a bounded mutual-information peer prediction rule that elicits truthful pre-training quality reports without requiring ground-truth labels; (ii) an intertemporal reliability calibration scheme that updates future valuations using post-session validation signals; and (iii) a deadline-induced layered clinching mechanism that allocates quality-weighted data while enforcing budget and feasibility constraints.We theoretically establish Bayes–Nash truthfulness for data owners, allocation feasibility and budget safety, and truthful residual-demand equilibrium for data consumers under standard clinching-auction regularity conditions. Empirical results on widely used federated learning benchmarks show that MainFL improves social welfare by up to 12.1% and model accuracy by up to 7.4% compared to state-of-the-art AFL baselines, while substantially reducing straggler-induced task timeouts.

Poster
Magnitude-preserving Layers Enable Efficient GANs

Nick Huang, Jackson Woodleigh, Aaron Gokaslan, Xinjie Yi, James Tompkin

展开摘要

GANs are appealing because they generate sharp images in a single forward pass. Recent works have stabilized GAN training, but FID may still plateau on diverse datasets like ImageNet-256 because the discriminator's activation magnitudes increase through training. We trace this pathology to the discriminator's incentive to sharpen its decision boundary by rescaling activations rather than by finding better features. Then, building on R3GAN, we treat magnitude preservation as a first-class architectural target across the network: $\ell_2$ weight normalization with centering, magnitude-preserving LReLU and residuals, forced post-update normalization, and feed-forward classifier heads. Across a roadmap of configurations, we perform diagnostic ablations to clarify what does and does not work and why. The resulting models reach FIDs of 2.20 @ 17 M parameters, 1.63 @ 60 M, and 1.52 @ 130 M on class-conditional ImageNet-256. At 1 NFE, this is substantially more efficient than competing diffusion and autoregressive methods, and than prior GAN baselines too (e.g., 10$\times$ more efficient than StyleGAN-XL for similar FID). In sum, our work presents a new SOTA in FID/parameter efficiency derived from simple adversarial training with well-behaved magnitude preserving layers.

Poster
Magnifying What Matters: Attention-Guided Adaptive Rendering for Visual Text Comprehension

Shenglai Zeng, Qirui Wang, Kai Guo, Xinnan Dai, Xianxuan Long, Hui Liu

展开摘要

Visual Text Comprehension (VTC) renders text into images for a vision-language model (VLM) to read, sidestepping LLM context-window limits and powering applications from long-page OCR to multi-page memory QA. Yet existing VTC pipelines treat rendering and layout as a fixed, content-agnostic preprocessing step, and offer little mechanistic understanding of how VLMs internally process visualized text. Through a focused empirical study on VTC QA tasks, we find that VLMs exhibit a localization-without-utilization regime: evidence-localizing attention emerges sharply in the middle-to-late layers and is largely decoupled from answer correctness, yet simply enlarging the localized spans on the rendered page recovers a large fraction of the failures. Building on these observations, we propose AGAR (Attention-Guided Adaptive Rendering), a training-free, model-agnostic method that leverages a VLM's own middle-to-late layer attention to identify the top-K important visual patches, maps them back to word spans, and re-renders the page with those spans enlarged before re-inferring the answer. Extensive experiments across nine VTC benchmarks (short-form, long-context, and multi-page memory QA) and four VLM backbones show that AGAR (i) consistently improves off-the-shelf VLMs as a plug-and-play enhancement, (ii) composes with VLM post-training to yield further gains, and (iii) remains robust under both visual- and text-side input degradation.

Poster
Magnetic Resonance Unpaired Image Translation with Pseudometric Schrödinger Bridges

Shuwen Wei, Samuel Remedios, Zhangxing Bian, Shimeng Wang, Jinwei Zhang, Junyu Chen, Yihao Liu, Lianrui Zuo, Muhammad Faizyab Ali Chaudhary, Blake Dewey, Aaron Carass, Jerry L Prince

展开摘要

Unpaired image translation is a critical preprocessing strategy for synthesizing missing sequences and harmonizing contrast variability in magnetic resonance (MR) imaging. However, in medical image processing, distribution-level translation is insufficient; it is vitally important that the anatomy is not distorted, corrupted, or lost after translation. Previous methods, like diffusion Schrödinger bridge matching (DSBM) achieve image translation, but do not preserve anatomy. We introduce the pseudometric Schrödinger bridge (PMSB), which trains two independent volume-preserving, isometry-regularized diffeomorphisms to map data from each domain to a latent anatomic pseudometric space. Then, DSBM is used within that space, explicitly minimizing the transport gap while preserving anatomy. Extensive experiments on the multi-contrast OASIS-3 dataset demonstrate that PMSB establishes a new state-of-the-art in structural consistency for cross-contrast synthesis. PMSB outperforms other leading methods and drastically reduces anatomical hallucinations, notably yielding a mean PSNR of 26.70 dB, a mean SSIM of 0.86, and a mean LNCC of 0.24.

Poster
Macrocanonical Generator Networks: data-efficient neural surrogates for amortized physics simulation

Niall Jeffrey, Benjamin Wandelt

展开摘要

Many scientific simulations are computationally expensive, limiting their use in simulation-based inference, uncertainty quantification, and decision making. We introduce *macrocanonical generator networks*, a framework for learning fast, data-efficient neural surrogates for *amortized* simulation of stationary physical processes by matching multiscale statistics of a target process. Inspired by microcanonical maximum-entropy synthesis, which matches feature statistics per sample by inner-loop optimization, our approach instead trains a neural generator to satisfy the same constraints in expectation, preserving physically realistic sample-to-sample fluctuations. We prove that gradient-descent training induces preconditioned gradient-descent dynamics in sample space that inherit the symmetry-preservation properties of the microcanonical gradient descent of Bruna and Mallat, amortizing its per-sample inner-loop optimization into a single training run after which every sample is generated in one forward pass. We further show that residual generator parameterizations initialized near the identity, trained with a small learning rate, preserve entropy locally during early optimization and mitigate mode collapse. Experiments on cosmology and fluid simulations show that macrocanonical generators recover realistic samples from extremely small training sets, in some cases a single training example, while generating new realizations more than $10^6$ times faster per sample than the reference simulator and more than $10^3$ times faster than microcanonical gradient descent. The trained generators can be reused for downstream pretraining, including simulation-based inference, providing a data-efficient route to multi-fidelity scientific machine learning workflows.

Poster
Machine Unlearning in Diffusion LLMs

Yili Wang, Yijie Xu, Lu Dai, Tairan Huang, Qianyi Cai, Huizai Yao, Tianfu Wang, Hui Xiong

展开摘要

Machine unlearning (MU) aims to remove sensitive or undesired knowledge from a trained model without retraining from scratch. While MU has been widely studied for autoregressive large language models, its application to diffusion large language models (DLLMs) remains largely unexplored. In this paper, we present the first systematic study of MU in DLLMs and show that existing unlearning objectives transfer poorly to this setting due to sparse supervision and inaccurate forgetting localization. To address these challenges, we propose \textsc{DL-Eraser}, a DLLM-native unlearning framework that suppresses target recoverability under high-mask conditioning while constraining updates to a utility-preserving subspace. Extensive experiments show that \textsc{DL-Eraser} achieves stronger forgetting while better preserving model utility than existing baselines. To the best of our knowledge, this is the first work that systematically investigates MU in DLLMs.

Poster
Machine Learning-Driven RAG System Design

Anastasiia Orlova, Nina Gubina, Aleksei Dmitrenko, Arsen Sarkisyan, Nikita Vetoshkin, Anastasiia Gorbunova, Ivan Dubrovsky, Julia Razlivina, Bogdan Neterebskii, Andrei Dmitrenko

展开摘要

Retrieval-Augmented Generation (RAG) has become a standard approach for grounding large language models in external knowledge, yet its performance depends critically on a large number of interacting design choices. Systematic optimization of these choices remains costly, as each configuration must be evaluated through full pipeline execution. In this work, we propose to treat RAG optimization as a prediction problem, using surrogate models to approximate the functional dependencies between configuration parameters and performance metrics. Using a stage-wise configurable RAG framework, we conduct large-scale experiments across three chemistry QA domains, systematically evaluating 648 configurations per domain and publicly releasing the resulting datasets of configurations and evaluation metrics. Surrogate models trained on this data achieve strong predictive accuracy ($R^2 \geq 0.84$ across all metrics and domains), and SHAP-IQ-based analysis of the learned models reveals consistent parameter interaction patterns across domains — despite substantial differences in corpus characteristics. We exploit this cross-domain regularity in transfer experiments: surrogate predictions generalize to unseen domains without target-domain training data on two transfer-robust metrics, and achieve full transfer across all six metrics with as little as 10\% of target-domain data. Finally, we apply surrogate models to optimize RAG configurations over an expanded search space of 61,152 candidates, recovering top-performing configurations in seconds rather than days, with gains of up to +0.09 in key retrieval and generation evaluation metrics. Together, these results demonstrate that RAG design spaces are structured, transferable, and efficiently optimizable via surrogate modeling.

Poster
MaRiO: Multi-agent Collaborative Reasoning via Shared Observations in MLLMs

Nathaniel Redmond, Fidel Omar Tito Cruz, Devansh Sharma, Shehreen Azad, Sirshapan Mitra, Shruti Vyas, Yogesh Rawat

展开摘要

Multimodal Large Language Models (MLLMs) show strong visual perception capabilities, but existing evaluations largely focus on single-view or multi-view settings with shared camera parameters, leaving the challenge of {multi-agent collaborative} scenarios underexplored. In such settings, multiple agents observe a shared environment from independent viewpoints, and reliable decisions require reasoning across these independent observations of the same environment. To study this problem, we introduce **MaRiO**, a benchmark for evaluating multi-agent collaborative reasoning, and evaluate 23 state-of-the-art MLLMs on it. Our analysis reveals three key findings: (1) spatial tasks are generally easier than geometric reasoning tasks; (2) most models struggle to resolve cross-agent correspondences, with errors increasing with scene complexity; and (3) models show limited ability to leverage geometric cues present in the scene. As an initial step toward addressing these challenges, we explore geometry-guided synthetic view augmentation that generates intermediate transition frames between agent observations, providing auxiliary spatial context that improves performance in certain categories. Overall, our results highlight that multi-agent collaborative reasoning remains an open challenge and an important direction for multimodal embodied systems.

Poster
MaRK: Markov-adapted Recurrent Kernels for Dynamic Operator Conditioning in State Space Models

Syed Ibrahim Omer, Ginny Wong, Xiangyu Zhao

展开摘要

State Space Models (SSMs) offer an efficient alternative to Transformers for sequence modeling, yet conditioning pre-trained SSMs for iterative generation typically operates outside the recurrent operator, through input injection or activation modulation. While such mechanisms expose the model to conditioning information, they leave the underlying temporal dynamics fixed. We introduce MaRK (Markov-adapted Recurrent Kernels), a dynamic operator-conditioning framework that maps context vectors directly into bounded modulations of a frozen SSM's recurrence ($A$), read-in ($B$), read-out ($C$), skip ($D$), and discretization ($\Delta$) parameters. Viewed through the lens of Linear Parameter-Varying systems, MaRK induces a context-indexed family of Markov parameter sequences, allowing each diffusion timestep to reshape the model's input-output memory kernel. We instantiate MaRK on a frozen 111M-parameter Hydra SSM backbone and study three adapter geometries: Hypernet, Chebyshev polynomial, and Discrete Cosine Transform kernels. Since these adapters modify the Markov parameter sequence through low-rank auxiliary maps on the frozen backbone, parameter-efficient fine-tuning arises as a structural consequence of the adaptation mechanism itself, requiring only 7.5--13M trainable auxiliary parameters to transition from a bidirectional objective to an iterative diffusion regime. The bounded recurrence parameterization further yields an analytic Affine Quadratic Stability certificate for the modulated recurrence. Through synthetic LPV recovery experiments and Markov-operator diagnostics, we show that MaRK recovers coordinate-invariant temporal operators under matched assumptions and produces distinct, stable timestep-conditioned memory profiles. Empirically, the Chebyshev variant yields the strongest performance, achieving an average validation loss of 2.63, followed by the DCT (2.66) and Hypernet (3.60) geometries. Together, these results provide initial evidence that dynamic operator modulation is a principled operator-level conditioning mechanism for adapting SSMs beyond input-stream injection and adaptive normalization.

Poster
MaPPO: Maximum a Posteriori Preference Optimization with Prior Knowledge

Guangchen Lan, Sipeng Zhang, Tianle Wang, Yuwei Zhang, Xinpeng Wei, Daoan Zhang, Xiaoman Pan, Hongming Zhang, Dong-Jun Han, Christopher Brinton

展开摘要

As the era of large language models (LLMs) unfolds, Preference Optimization (PO) methods have become a central approach to aligning LLMs with human preferences and improving performance. We propose Maximum a Posteriori Preference Optimization (MaPPO), a methodology for learning from preferences that explicitly incorporates prior reward knowledge into the optimization objective. Building on the paradigm employed by Direct Preference Optimization (DPO) and its variants of treating preference learning as a Maximum Likelihood Estimation (MLE) problem, MaPPO integrates prior reward estimates into a principled Maximum a Posteriori (MaP) objective. This not only generalizes DPO and its variants, but also enhances alignment by mitigating the oversimplified binary classification of responses. Additionally, MaPPO introduces no additional hyperparameters, and supports preference optimization in both offline and online settings. In addition, MaPPO can be used as a plugin for DPO variants, including widely used SimPO, IPO and CPO, and produce consistent improvements. Extensive empirical evaluations of different model sizes and model series on three standard benchmarks (MT-Bench, AlpacaEval 2.0, and Arena-Hard) demonstrate consistent improvements in alignment performance without sacrificing computational efficiency.

Poster
MaPP: A Unified Marginalized Posterior-Predictive Framework for Data-Efficient RLVR

Yangyang Ren, Haodong Zhu, Sheng Xu, Yanjing Li, Nikolai Y Zolotykh, Wentao Zhang, Baochang Zhang

展开摘要

Reinforcement learning with verifiable rewards (RLVR) enhances the reasoning capabilities of large language models (LLMs), but at the expense of significant computational overhead due to compute-intensive rollout processes and frequent policy updates. Online prompt selection, a widely adopted strategy for improving training efficiency, maintains per-prompt Bayesian posteriors to predict prompt difficulty and prioritize informative prompts before committing rollout budget. However, these methods assess prompt informativeness without accounting for how reliably learning signal is extracted from sampled responses. In GRPO-based RL algorithms, the realized advantage of a response depends not only on its own outcome, but also on the randomly sampled outcomes of its peers through group normalization. Our experimental and theoretical analysis show that the resulting uncertainty in group composition induces composition noise, a non-vanishing variance component that creates an irreducible lower bound on gradient estimation error. Consequently, the standard group-relative advantage fails to faithfully characterize response-level utility, degrading gradient estimation and thereby impairing downstream prompt selection. To address this issue, we propose a unified Marginalized Posterior-Predictive framework, MaPP, for data-efficient RLVR, which first denoises response-level advantage estimation and then improves prompt selection using a shared Beta posterior. Specifically, for each response, MaPP replaces the standard group-relative advantage with a composition-invariant intrinsic advantage via closed-form Beta-Binomial marginalization. This yields a closed-form posterior-predictive advantage estimator whose error provably diminishes as the posterior concentrates. Then, building on the same posterior, MaPP derives an uncertainty-aware prompt selection score that more faithfully characterizes prompt informativeness, improving data efficiency without additional rollout cost. Experiments across mathematics, planning, and visual geometry on five model backbones show that MaPP consistently outperforms GRPO and strong selection baselines, achieving up to +2.45 average accuracy improvement over the strongest baseline under the same rollout budget, a new state-of-the-art.

Poster
MVPISplat: Multi-View Photometric Inconsistency for Defending 3D Gaussian Splatting Attacks

Md Mahedi Hasan Rigan, Nicole Meng, Miao Yin, Yingjie Lao, Faysal Hossain Shezan

展开摘要

3D Gaussian Splatting (3DGS) achieves real-time photorealistic novel-view synthesis but is vulnerable to adversarial perturbations of its training images. Recent attacks inflate the Gaussian count to exhaust GPU memory or corrupt rendered scenes to mislead downstream classifiers. We find that both attacks have the same structural signature: 2D image adversarial perturbations are not 3D-consistent by design. The Gaussians generated to match them provide erroneous contributions in some views while making significant contributions in others. We propose Multi-View Photometric Inconsistency (MVPI) Defense that scores each Gaussian by the variance of its opacity-weighted local $\mathcal{L}_1$ contribution across a stratified set of training views. The most inconsistent are soft-pruned via 3DGS's existing opacity threshold method. We evalute our approach on two different datasets. MVPI reduces peak Gaussian count by up to $1.90\times$ and training time by $1.22{-}1.50\times$ under Poison-Splat attack. It also restores top-1 classification accuracy on adversarially perturbed renders from $57.4\%$ to $66.5\%$. Our code is available at https://anonymous.4open.science/r/PruneDefense-2876/README.md.

Poster
MUTE: Multi-Level Alignment Uncoupling Against Talking-Head Exploitation for Voice Protection

Donghyun Kim, Jin Hong, Seungmin Kim, Dain Kim, Junseok Kwon, Daeseon Choi

展开摘要

Talking-head generation models, which synthesize realistic facial animations from audio, are increasingly vulnerable to misuse in multimodal deepfake scenarios. Protecting such systems remains challenging, as talking-head models fundamentally rely on precise audio–visual alignment, while effective audio protection methods remain largely underexplored. In this work, we propose MUTE, an audio protection framework that uncouples the underlying audio–visual alignment through a multi-level strategy. Specifically, MUTE combines (1) Representation-level Degradation, which perturbs temporal audio embeddings to degrade their representations, and (2) Alignment-level Disruption, which directly perturbs cross-modal attention to disrupt structural alignment. To improve robustness, perturbations are constrained in the STFT domain to high-energy regions, making them resistant to post-processing and denoising. An optional speaker-level objective further mitigates potential bypass via TTS-based resynthesis. Extensive experiments demonstrate that MUTE consistently degrades lip synchronization across both white-box and black-box talking-head models while preserving perceptual audio quality. The proposed method remains effective under real-world transformations and can be combined with image-based approaches to provide stronger multimodal protection.

Poster
MUST: Stage-Adaptive Stability Control for Test-Time Scaling in Multimodal Reasoning

YunFeng Deng

展开摘要

Test-time scaling (TTS) improves reasoning by allocating additional inference compute, but in multimodal large language models (MLLMs), more compute is not always reliable. Longer reasoning may amplify visual misperception, induce answer drift, reinforce majority traps, or turn initially correct predictions into overthought failures. We propose MUST, a training-free framework that recasts multimodal TTS as stage-conditioned stability control. MUST separates inference into reasoning and verification stages and assigns each stage a different reliability criterion. During reasoning, Contrastive Answer-Manifold Stability (CAMS) selects answers whose supporting trajectories form compact and separable latent groups. During verification, Attention-Free Support-Chain Stability (AF-SCS) evaluates whether explicit visual evidence and subsequent reasoning form a stable latent support chain, without relying on token-to-patch attention maps. Experiments on multimodal reasoning benchmarks show that MUST improves the accuracy-compute trade-off and reduces overthinking-induced errors. These results suggest that reliable MLLM test-time scaling should adaptively control when and how extra compute is trusted, rather than simply increasing inference budget.

Poster
MUSS: A Multi-scale and Sequence-based Model for Single-cell Gene Regulation

Kangjie Zheng, Amirhossein Vahidi, Liying Jin, Joseph Clarke, Vijaya Baskar, Connor Rogerson, mj zhang, Muzlifah Haniffa, Anshul Kundaje, Mohammad Lotfollahi

展开摘要

Modeling gene regulation in single cells requires jointly representing DNA sequence, chromatin accessibility, and gene expression across regulatory scales. Sequence-based models capture DNA-level regulatory grammar but typically lack cell-level resolution, whereas single-cell omics models capture cell-state semantics but treat genes and peaks as fixed vocabulary tokens, and thus lack a unified sequence-based view of regulation. Here, we present MUSS, a sequence-based multi-scale model for single-cell gene regulation that preserves both DNA-level and cell-level resolution. MUSS derives peak- and gene-level representations from DNA using a frozen pre-trained sequence encoder, integrates them with a multi-scale encoder combining peak-peak self-attention and distance-biased peak-gene interaction, and trains on paired scATAC-seq and scRNA-seq to align sequence-derived representations with cell-specific regulatory states. Across gene expression prediction, enhancer-gene linking, TF-target gene recovery, and zero-shot cell clustering, MUSS outperforms both sequence-based and single-cell omics baselines, and further generalizes to genes and peaks unseen during training. Together, these results demonstrate that MUSS learns biologically meaningful and broadly generalizable regulatory representations for decoding cell-type-specific regulatory programs from DNA sequence.

Poster