NeurIPS 2025 论文列表

Learning the solution operators of PDEs on arbitrary domains is challenging due to the diversity of possible domain shapes, in addition to the often intricate underlying physics. We propose an end-to-end graph neural network (GNN) based neural operator to learn PDE solution operators from data on point clouds in arbitrary domains. Our multi-scale model maps data between input/output point clouds by passing it through a downsampled regional mesh. The approach includes novel elements aimed at ensuring spatio-temporal resolution invariance. Our model, termed RIGNO, is tested on a challenging suite of benchmarks composed of various time-dependent and steady PDEs defined on a diverse set of domains. We demonstrate that RIGNO is significantly more accurate than neural operator baselines and robustly generalizes to unseen resolutions both in space and in time. Our code is publicly available at github.com/camlab-ethz/rigno.

Understanding and decoding human brain activity from electroencephalography (EEG) signals is a fundamental problem in neuroscience and artificial intelligence, with applications ranging from cognition and emotion recognition to clinical diagnosis and brain–computer interfaces. While recent EEG foundation models have made progress in generalized brain decoding by leveraging unified architectures and large-scale pretraining, they inherit a scale-agnostic dense modeling paradigm from NLP and vision. This design overlooks an intrinsic property of neural activity—cross-scale spatiotemporal structure. Different EEG task patterns span a broad range of temporal and spatial scales, from brief neural activations to slow-varying rhythms, and from localized cortical activations to large-scale distributed interactions. Ignoring this diversity may lead to suboptimal representations and weakened generalization ability. To address these limitations, we propose CSBrain, a Cross-scale Spatiotemporal Brain foundation model for generalized EEG decoding. CSBrain introduces two key components: (i) Cross-scale Spatiotemporal Tokenization (CST), which aggregates multi-scale features within localized temporal windows and anatomical brain regions into compact scale-aware token representations; and (ii) Structured Sparse Attention (SSA), which models cross-window and cross-region dependencies for diverse decoding tasks, further enriching scale diversities while eliminating the spurious dependencies. CST and SSA are alternately stacked to progressively integrate cross-scale spatiotemporal dependencies. Extensive experiments across 11 representative EEG tasks and 16 datasets demonstrate that CSBrain consistently outperforms both task-specific models and strong foundation baselines. These results establish cross-scale modeling as a key inductive bias for generalized EEG decoding and highlight CSBrain as a robust backbone for future brain–AI research.

As AI grows more powerful, it will increasingly shape how we understand the world. But with this influence comes the risk of amplifying misinformation and deepening social divides—especially on consequential topics where factual accuracy directly impacts well-being. Scalable Oversight aims to ensure AI systems remain truthful even when their capabilities exceed those of their evaluators. Yet when humans serve as evaluators, their own beliefs and biases can impair judgment. We study whether AI debate can guide biased judges toward the truth by having two AI systems debate opposing sides of controversial factuality claims on COVID-19 and climate change where people hold strong prior beliefs. We conduct two studies. Study I recruits human judges with either mainstream or skeptical beliefs who evaluate claims through two protocols: debate (interaction with two AI advisors arguing opposing sides) or consultancy (interaction with a single AI advisor). Study II uses AI judges with and without human-like personas to evaluate the same protocols. In Study I, debate consistently improves human judgment accuracy and confidence calibration, outperforming consultancy by 4-10\% across COVID-19 and climate change claims. The improvement is most significant for judges with mainstream beliefs (up to +15.2\% accuracy on COVID-19 claims), though debate also helps skeptical judges who initially misjudge claims move toward accurate views (+4.7\% accuracy). In Study II, AI judges with human-like personas achieve even higher accuracy (78.5\%) than human judges (70.1\%) and default AI judges without personas (69.8\%), suggesting their potential for supervising frontier AI models. These findings highlight AI debate as a promising path toward scalable, bias-resilient oversight in contested domains.

Understanding convergent learning---the degree to which independently trained neural systems---whether multiple artificial networks or brains and models---arrive at similar internal representations---is crucial for both neuroscience and AI. Yet, the literature remains narrow in scope---typically examining just a handful of models with one dataset, relying on one alignment metric, and evaluating networks at a single post-training checkpoint. We present a large-scale audit of convergent learning, spanning dozens of vision models and thousands of layer-pair comparisons, to close these long-standing gaps. First, we pit three alignment families against one another---linear regression (affine-invariant), orthogonal Procrustes (rotation-/reflection-invariant), and permutation/soft-matching (unit-order-invariant). We find that orthogonal transformations align representations nearly as effectively as more flexible linear ones, and although permutation scores are lower, they significantly exceed chance, indicating a privileged representational basis. Tracking convergence throughout training further shows that nearly all eventual alignment crystallizes within the first epoch---well before accuracy plateaus---indicating it is largely driven by shared input statistics and architectural biases, not by the final task solution. Finally, when models are challenged with a battery of out-of-distribution images, early layers remain tightly aligned, whereas deeper layers diverge in proportion to the distribution shift. These findings fill critical gaps in our understanding of representational convergence, with implications for neuroscience and AI.

Foundation models have transformed AI by reducing reliance on task-specific data through large-scale pretraining. While successful in language and vision, their adoption in EEG has lagged due to the heterogeneity of public datasets, which are collected under varying protocols, devices, and electrode configurations. Existing EEG foundation models struggle to generalize across these variations, often restricting pretraining to a single setup, resulting in suboptimal performance, in particular under linear probing. We present REVE (Representation for EEG with Versatile Embeddings), a pretrained model explicitly designed to generalize across diverse EEG signals. REVE introduces a novel 4D positional encoding scheme that enables it to process signals of arbitrary length and electrode arrangement. Using a masked autoencoding objective, we pretrain REVE on over 60,000 hours of EEG data from 92 datasets spanning 25,000 subjects, representing the largest EEG pretraining effort to date. REVE achieves state-of-the-art results on 10 downstream EEG tasks, including motor imagery classification, seizure detection, sleep staging, cognitive load estimation, and emotion recognition. With little to no fine-tuning, it demonstrates strong generalization, and nuanced spatio-temporal modeling. We release code, pretrained weights, and tutorials to support standardized EEG research and accelerate progress in clinical neuroscience.

Deciphering how visual stimuli are transformed into cortical responses is a fundamental challenge in computational neuroscience. This visual-to-neural mapping is inherently a one-to-many relationship, as identical visual inputs reliably evoke variable hemodynamic responses across trials, contexts, and subjects. However, existing deterministic methods struggle to simultaneously model this biological variability while capturing the underlying functional consistency that encodes stimulus information. To address these limitations, we propose SynBrain, a generative framework that simulates the transformation from visual semantics to neural responses in a probabilistic and biologically interpretable manner. SynBrain introduces two key components: (i) BrainVAE models neural representations as continuous probability distributions via probabilistic learning while maintaining functional consistency through visual semantic constraints; (ii) A Semantic-to-Neural Mapper acts as a semantic transmission pathway, projecting visual semantics into the neural response manifold to facilitate high-fidelity fMRI synthesis. Experimental results demonstrate that SynBrain surpasses state-of-the-art methods in subject-specific visual-to-fMRI encoding performance. Furthermore, SynBrain adapts efficiently to new subjects with few-shot data and synthesizes high-quality fMRI signals that are effective in improving data-limited fMRI-to-image decoding performance. Beyond that, SynBrain reveals functional consistency across trials and subjects, with synthesized signals capturing interpretable patterns shaped by biological neural variability. Our code is available at https://github.com/MichaelMaiii/SynBrain.

Understanding how animals learn is a central challenge in neuroscience, with growing relevance to the development of animal- or human-aligned artificial intelligence. However, existing approaches tend to assume fixed parametric forms for the learning rule (e.g., Q-learning, policy gradient), which may not accurately describe the complex forms of learning employed by animals in realistic settings. Here we address this gap by developing a framework to infer learning rules directly from behavioral data collected during *de novo* task learning. We assume that animals follow a decision policy parameterized by a generalized linear model (GLM), and we model their learning rule—the mapping from task covariates to per-trial weight updates—using a deep neural network (DNN). This formulation allows flexible, data-driven inference of learning rules while maintaining an interpretable form of the decision policy itself. To capture more complex learning dynamics, we introduce a recurrent neural network (RNN) variant that relaxes the Markovian assumption that learning depends solely on covariates of the current trial, allowing for learning rules that integrate information over multiple trials. Simulations demonstrate that the framework can recover ground-truth learning rules. We applied our DNN and RNN-based methods to a large behavioral dataset from mice learning to perform a sensory decision-making task and found that they outperformed traditional RL learning rules at predicting the learning trajectories of held-out mice. The inferred learning rules exhibited reward-history–dependent learning dynamics, with larger updates following sequences of rewarded trials. Overall, these methods provide a flexible framework for inferring learning rules from behavioral data in *de novo* learning tasks, setting the stage for improved animal training protocols and the development of behavioral digital twins.

As large language models (LLMs) continue to advance, their capacity to function effectively across a diverse range of languages has shown marked improvement. Preliminary studies observe that the hidden activations of LLMs often resemble English, even when responding to non-English prompts. This has led to the widespread assumption that LLMs may ``think'' in English. However, more recent results showing strong multilingual performance, even surpassing English performance on specific tasks in other languages, challenge this view. In this work, we find that LLMs progressively develop a core language-agnostic parameter space—a remarkably small subset of parameters whose deactivation results in significant performance degradation across all languages. This compact yet critical set of parameters underlies the model’s ability to generalize beyond individual languages, supporting the emergence of abstract thought that is not tied to any specific linguistic system. Specifically, we identify language-related neurons—those are consistently activated during the processing of particular languages, and categorize them as either shared (active across multiple languages) or exclusive (specific to one). As LLMs undergo continued development over time, we observe a marked increase in both the proportion and functional importance of shared neurons, while exclusive neurons progressively diminish in influence. These shared neurons constitute the backbone of the core language-agnostic parameter space, supporting the emergence of abstract thought. Motivated by these insights, we propose neuron-specific training strategies tailored to LLMs' language-agnostic levels at different development stages. Experiments across diverse LLM families support our approach. Our codes are available at https://anonymous.4open.science/status/S-C393.

We study the inductive biases of diffusion models with a conditioning-variable, which have seen widespread application as both text-conditioned generative image models and observation-conditioned continuous control policies. We observe that when these models are queried conditionally, their generations consistently deviate from the idealized "denoising" process upon which diffusion models are formulated, inducing disagreement between popular sampling algorithms (e.g. DDPM, DDIM). We introduce *Schedule Deviation*, a rigorous measure which captures the rate of deviation from a standard denoising process, and provide a methodology to compute it. Crucially, we demonstrate that the deviation from an idealized denoising process occurs irrespective of the model capacity or amount of training data. We posit that this phenomenon occurs due to the difficulty of bridging distinct denoising flows across different parts of the conditioning space and show theoretically how such a phenomenon can arise through an inductive bias towards smoothness.

Characterizing interactions between brain areas is a fundamental goal of systems neuroscience. While such analyses are possible when areas are recorded simultaneously, it is rare to observe all combinations of areas of interest within a single animal or recording session. How can we leverage multi-animal datasets to better understand multi-area interactions? Building on recent progress in large-scale, multi-animal models, we introduce NeuroPaint, a masked autoencoding approach for inferring the dynamics of unobserved brain areas. By training across animals with overlapping subsets of recorded areas, NeuroPaint learns to reconstruct activity in missing areas based on shared structure across individuals. We train and evaluate our approach on both synthetic data and two multi-animal, multi-area Neuropixels datasets. Our results demonstrate that models trained across animals with partial observations can successfully in-paint the dynamics of unrecorded areas, enabling multi-area analyses that transcend the limitations of any single experiment.

In large-scale recommendation systems, multimodal (MM) content is increasingly introduced to enhance the generalization of ID features. The rise of Multimodal Large Language Models (MLLMs) enables the construction of unified user and item representations. However, the semantic distribution gap between MM and ID representations leads to \textit{convergence inconsistency} during joint training: the ID branch converges quickly, while the MM branch requires more epochs, thus limiting overall performance. To address this, we propose a two-stage framework including MM representation learning and joint training optimization. First, we fine-tune the MLLM to generate unified user and item representations, and introduce collaborative signals by post-aligning user ID representations to alleviate semantic differences. Then, we propose an Adaptive Gradient Masking (AGM) training strategy to dynamically regulate parameter updates between ID and MLLM branches. AGM estimates the contribution of each representation with mutual information, and applies non-uniform gradient masking at the sub-network level to balance optimization. We provide theoretical analysis of AGM's effectiveness and further introduce an unbiased variant, AGM*, to enhance training stability. Experiments on offline and online A/B tests validate the effectiveness of our approach in mitigating convergence inconsistency and improving performance.

Recent advances in sign language research have benefited from CNN-based backbones, which are primarily transferred from traditional computer vision tasks (\eg object detection, image recognition). However, these CNN-based backbones usually excel at extracting features like contours and texture, but may struggle with capturing sign-related features. To capture such sign-related features, SignGraph model extracts the cross-region sign features by building the Local Sign Graph (LSG) module and the Temporal Sign Graph (TSG) module. However, we emphasize that although capturing cross-region dependencies can improve sign language performance, it may degrade the representation quality of local regions. To mitigate this, we introduce MixSignGraph, which represents sign sequences as a group of mixed graphs for feature extraction. Specifically, besides the LSG module and TSG module that model the intra-frame and inter-frame cross-regions features, we design a simple yet effective Hierarchical Sign Graph (HSG) module, which enhances local region representations following the extraction of cross-region features, by aggregating the same-region features from different-granularity feature maps of a frame, \ie to boost discriminative local features. In addition, to further improve the performance of gloss-free sign language task, we propose a simple yet counter-intuitive Text-based CTC Pre-training (TCTC) method, which generates pseudo gloss labels from text sequences for model pre-training. Extensive experiments conducted on the current five sign language datasets demonstrate that MixSignGraph surpasses the most current models on multiple sign language tasks across several datasets, without relying on any additional cues. Code and models are available at: \href{https://github.com/gswycf/SignLanguage}{\textcolor{blue}{https://github.com/gswycf/SignLanguage}}.

Spiking Neural Networks (SNNs) offer a biologically plausible and energy-efficient framework for temporal information processing. However, existing studies overlook a fundamental property widely observed in biological neurons—synaptic heterogeneity, which plays a crucial role in temporal processing and cognitive capabilities. To bridge this gap, we introduce HetSyn, a generalized framework that models synaptic heterogeneity with synapse-specific time constants. This design shifts temporal integration from the membrane potential to the synaptic current, enabling versatile timescale integration and allowing the model to capture diverse synaptic dynamics. We implement HetSyn as HetSynLIF, an extended form of the leaky integrate-and-fire (LIF) model equipped with synapse-specific decay dynamics. By adjusting the parameter configuration, HetSynLIF can be specialized into vanilla LIF neurons, neurons with threshold adaptation, and neuron-level heterogeneous models. We demonstrate that HetSynLIF not only improves the performance of SNNs across a variety of tasks—including pattern generation, delayed match-to-sample, speech recognition, and visual recognition—but also exhibits strong robustness to noise, enhanced working memory performance, efficiency under limited neuron resources, and generalization across timescales. In addition, analysis of the learned synaptic time constants reveals trends consistent with empirical observations in biological synapses. These findings underscore the significance of synaptic heterogeneity in enabling efficient neural computation, offering new insights into brain-inspired temporal modeling. Code available at: https://github.com/dzcgood/HetSyn.

Hebbian learning is a key principle underlying learning in biological neural networks. We relate a Hebbian spike-timing-dependent plasticity rule to noisy gradient descent with respect to a non-convex loss function on the probability simplex. Despite the constant injection of noise and the non-convexity of the underlying optimization problem, one can rigorously prove that the considered Hebbian learning dynamic identifies the presynaptic neuron with the highest activity and that the convergence is exponentially fast in the number of iterations. This is non-standard and surprising as typically noisy gradient descent with fixed noise level only converges to a stationary regime where the noise causes the dynamic to fluctuate around a minimiser.

Convolutional neural networks (CNNs) trained on object recognition achieve high task performance but continue to exhibit vulnerability under a range of visual perturbations and out-of-domain images, when compared with biological vision. Prior work has demonstrated that coupling a standard CNN with a front-end (VOneBlock) that mimics the primate primary visual cortex (V1) can improve overall model robustness. Expanding on this, we introduce Early Vision Networks (EVNets), a new class of hybrid CNNs that combine the VOneBlock with a novel SubcorticalBlock, whose architecture draws from computational models in neuroscience and is parameterized to maximize alignment with subcortical responses reported across multiple experimental studies. Without being optimized to do so, the assembly of the SubcorticalBlock with the VOneBlock improved V1 alignment across most standard V1 benchmarks, and better modeled extra-classical receptive field phenomena. In addition, EVNets exhibit stronger emergent shape bias and outperform the base CNN architecture by 9.3\% on an aggregate benchmark of robustness evaluations, including adversarial perturbations, common corruptions, and domain shifts. Finally, we show that EVNets can be further improved when paired with a state-of-the-art data augmentation technique, surpassing the performance of the isolated data augmentation approach by 6.2\% on our robustness benchmark. This result reveals complementary benefits between changes in architecture to better mimic biology and training-based machine learning approaches.

The rise of realistic digital face generation and manipulation poses significant social risks. The primary challenge lies in the rapid and diverse evolution of generation techniques, which often outstrip the detection capabilities of existing models. To defend against the ever-evolving new types of forgery, we need to enable our model to quickly adapt to new domains with limited computation and data while avoiding forgetting previously learned forgery types. In this work, we posit that genuine facial samples are abundant and relatively stable in acquisition methods, while forgery faces continuously evolve with the iteration of manipulation techniques. Given the practical infeasibility of exhaustively collecting all forgery variants, we frame face forgery detection as a continual learning problem and allow the model to develop as new forgery types emerge. Specifically, we employ a Developmental Mixture of Experts (MoE) architecture that uses LoRA models as its individual experts. These experts are organized into two groups: a Real-LoRA to learn and refine knowledge of real faces, and multiple Fake-LoRAs to capture incremental information from different forgery types. To prevent catastrophic forgetting, we ensure that the learning direction of Fake-LoRAs is orthogonal to the established subspace. Moreover, we integrate orthogonal gradients into the orthogonal loss of Fake-LoRAs, preventing gradient interference throughout the training process of each task. Experimental results under both the datasets and manipulation types incremental protocols demonstrate the effectiveness of our method.

Predicting future neural activity is a core challenge in modeling brain dynamics, with applications ranging from scientific investigation to closed-loop neurotechnology. While recent models of population activity emphasize interpretability and behavioral decoding, neural forecasting—particularly across multi-session, spontaneous recordings—remains underexplored. We introduce POCO, a unified forecasting model that combines a lightweight univariate forecaster with a population-level encoder to capture both neuron-specific and brain-wide dynamics. Trained across five calcium imaging datasets spanning zebrafish, mice, and *C. elegans*, POCO achieves state-of-the-art accuracy at cellular resolution in spontaneous behaviors. After pre-training, POCO rapidly adapts to new recordings with minimal fine-tuning. Notably, POCO's learned unit embeddings recover biologically meaningful structure—such as brain region clustering—without any anatomical labels. Our comprehensive analysis reveals several key factors influencing performance, including context length, session diversity, and preprocessing. Together, these results position POCO as a scalable and adaptable approach for cross-session neural forecasting and offer actionable insights for future model design. By enabling accurate, generalizable forecasting models of neural dynamics across individuals and species, POCO lays the groundwork for adaptive neurotechnologies and large-scale efforts for neural foundation models. Code is available at [https://github.com/yuvenduan/POCO](https://github.com/yuvenduan/POCO).

Dynamic GNNs, which integrate temporal and spatial features in Electroencephalography (EEG) data, have shown great potential in automating seizure detection. However, fully capturing the underlying dynamics necessary to represent brain states, such as seizure and non-seizure, remains a non-trivial task and presents two fundamental challenges. First, most existing dynamic GNN methods are built on temporally fixed static graphs, which fail to reflect the evolving nature of brain connectivity during seizure progression. Second, current efforts to jointly model temporal signals and graph structures and, more importantly, their interactions remain nascent, often resulting in inconsistent performance. To address these challenges, we present the first theoretical analysis of these two problems, demonstrating the effectiveness and necessity of explicit dynamic modeling and time-then-graph dynamic GNN method. Building on these insights, we propose EvoBrain, a novel seizure detection model that integrates a two-stream Mamba architecture with a GCN enhanced by Laplacian Positional Encoding, following neurological insights. Moreover, EvoBrain incorporates explicitly dynamic graph structures, allowing both nodes and edges to evolve over time. Our contributions include (a) a theoretical analysis proving the expressivity advantage of explicit dynamic modeling and time-then-graph over other approaches, (b) a novel and efficient model that significantly improves AUROC by 23\% and F1 score by 30\%, compared with the dynamic GNN baseline, and (c) broad evaluation of our method on the challenging early seizure prediction task.

Intracortical Brain-Computer Interfaces (iBCI) decode behavior from neural population activity to restore motor functions and communication abilities in individuals with motor impairments. A central challenge for long-term iBCI deployment is the nonstationarity of neural recordings, where the composition and tuning profiles of the recorded populations are unstable across recording sessions. Existing approaches attempt to address this issue by explicit alignment techniques; however, they rely on fixed neural identities and require test-time labels or parameter updates, limiting their generalization across sessions and imposing additional computational burden during deployment. In this work, we address the problem of cross-session nonstationarity in long-term iBCI systems and introduce SPINT - a Spatial Permutation-Invariant Neural Transformer framework for behavioral decoding that operates directly on unordered sets of neural units. Central to our approach is a novel context-dependent positional embedding scheme that dynamically infers unit-specific identities, enabling flexible generalization across recording sessions. SPINT supports inference on variable-size populations and allows few-shot, gradient-free adaptation using a small amount of unlabeled data from the test session. We evaluate SPINT on three multi-session datasets from the FALCON Benchmark, covering continuous motor decoding tasks in human and non-human primates. SPINT demonstrates robust cross-session generalization, outperforming existing zero-shot and few-shot unsupervised baselines while eliminating the need for test-time alignment and fine-tuning. Our work contributes an initial step toward a robust and scalable neural decoding framework for long-term iBCI applications.