NeurIPS 2025 论文列表

Recent advances in graph machine learning have shifted to data-centric paradigms, driven by two emerging research fields: (1) Federated graph learning (FGL) facilitates multi-client collaboration but struggles with data and task heterogeneity, resulting in limited practicality; (2) Graph foundation model (GFM) enables desirable domain generalization but is typically confined to single-machine training, neglecting the potential of cross-silo data and computational resources. It is evident that these two paradigms are complementary, and their integration offers substantial advantages. Motivated by this, we present a pioneering study about the federated graph foundation model (FedGFM), a novel decentralized GFM training paradigm. Despite the promising vision of FedGFM, knowledge entanglement has emerged as a critical challenge, where multi-domain knowledge is encoded into indistinguishable representations, thereby limiting downstream adaptation. To this end, we propose FedGFM+, an effective FedGFM framework with two key modules to mitigate knowledge entanglement in a dual-pronged manner. (1) AncDAI: From a global perspective, we introduce a novel anchor-based domain-aware initialization strategy. Before pre-training, each client encodes its local graph into a domain-specific prototypes, which serve as semantic anchors in the representation space. Around each anchor, we construct synthetic embeddings to initialize the global model. We theoretically show that these prototypes are distinguishable across domains, and the initialization provides a strong inductive bias that facilitates disentanglement of domain-specific knowledge. (2) AdaDPP: From a local perspective, during pre-training, each client independently learns a lightweight graph prompt that captures domain semantic preferences. During fine-tuning, prompts from all clients are aggregated into an adaptive domain-sensitive prompt pool, from which the GFM selects relevant prompts to augment the target graph’s attributes, thereby improving the downstream adaptation. FedGFM+ is extensively evaluated on 8 diverse benchmarks spanning multiple domains and tasks, outperforming 20 baselines from isolated supervised learning, FGL, and federated variants of centralized GFM paradigms.

Building a universal trajectory foundation model is a promising solution to address the limitations of existing trajectory modeling approaches, such as task specificity, regional dependency, and data sensitivity. Despite its potential, data preparation, pre-training strategy development, and architectural design present significant challenges in constructing this model. Therefore, we introduce **UniTraj**, a Universal Trajectory foundation model that aims to address these limitations through three key innovations. First, we construct **WorldTrace**, an unprecedented dataset of 2.45 million trajectories with billions of GPS points spanning 70 countries, providing the diverse geographic coverage essential for region-independent modeling. Second, we develop novel pre-training strategies--Adaptive Trajectory Resampling and Self-supervised Trajectory Masking--that enable robust learning from heterogeneous trajectory data with varying sampling rates and quality. Finally, we tailor a flexible model architecture to accommodate a variety of trajectory tasks, effectively capturing complex movement patterns to support broad applicability. Extensive experiments across multiple tasks and real-world datasets demonstrate that UniTraj consistently outperforms existing methods, exhibiting superior scalability, adaptability, and generalization, with WorldTrace serving as an ideal yet non-exclusive training resource. The implementation codes and full dataset are available at https://github.com/Yasoz/UniTraj.

In this paper, we investigate source-free domain adaptation (SFDA) for visible-infrared person re-identification (VI-ReID), aiming to adapt a pre-trained source model to an unlabeled target domain without access to source data. To address this challenging setting, we propose a novel learning paradigm, termed Source-Free Visible-Infrared Person Re-Identification (SVIP), which fully exploits the prior knowledge embedded in the source model to guide target domain adaptation. The proposed framework comprises three key components specifically designed for the source-free scenario: 1) a Source-Guided Contrastive Learning (SGCL) module, which leverages the discriminative feature space of the frozen source model as a reference to perform contrastive learning on the unlabeled target data, thereby preserving discrimination without requiring source samples; 2) a Residual Transfer Learning (RTL) module, which learns residual mappings to adapt the target model’s representations while maintaining the knowledge from the source model; and 3) a Structural Consistency-Guided Cross-modal Alignment (SCCA) module, which enforces reciprocal structural constraints between visible and infrared modalities to identify reliable cross-modal pairs and achieve robust modality alignment without source supervision. Extensive experiments on benchmark datasets demonstrate that SVIP substantially enhances target domain performance and outperforms existing unsupervised VI-ReID methods under source-free settings.

Autoregressive (AR) language models generate text one token at a time, which limits their inference speed. Diffusion-based language models offer a promising alternative, as they can decode multiple tokens in parallel. However, we identify a key bottleneck in current diffusion LMs: the \textbf{long decoding-window problem}, where tokens generated far from the input context often become irrelevant or repetitive. Previous solutions like semi-autoregressive address this issue by splitting windows into blocks (sacrificing bidirectionality), but we find that this also leads to \textbf{time-interval expansion problem}, sacrificing the speed. Therefore, semi-AR eliminates the main advantages of diffusion models. To overcome this, we propose Convolutional decoding (\textit{Conv}), a normalization-based method that narrows the decoding window without hard segmentation, leading to better fluency and flexibility. Additionally, we introduce Rejecting Rule-based Fine-Tuning (R2FT), a post-hoc training scheme that better aligns tokens at positions far from context. Our methods achieve state-of-the-art results on open-ended generation benchmarks (e.g., AlpacaEval) among diffusion LM baselines, with significantly lower step size than previous works, demonstrating both speed and quality improvements. The code is available online (\url{https://github.com/ybseo-ac/Conv}).

Recently, self-play fine-tuning (SPIN) has been proposed to adapt large language models to downstream applications with scarce expert-annotated data, by iteratively generating synthetic responses from the model itself. However, SPIN is designed to optimize the current reward advantages of annotated responses over synthetic responses at hand, which may gradually vanish during iterations, leading to \textit{unstable optimization}. Moreover, the utilization of reference policy induces a \textit{misalignment} issue between the reward formulation for training and the metric for generation. To address these limitations, we propose a novel \textbf{T}riplet-based \textbf{S}elf-\textbf{P}lay f\textbf{I}ne-tu\textbf{N}ing (TSPIN) method that integrates two key designs. First, beyond current advantages, TSPIN additionally incorporates historical advantages between iteratively generated responses and proto-synthetic responses produced by the initial policy. Even if the current advantages diminish, historical advantages remain effective, stabilizing the overall optimization. Second, TSPIN introduces the entropy constraint into the self-play framework, which is theoretically justified to support reference-free fine-tuning, eliminating the training-generation discrepancy. Empirical results on various tasks demonstrate not only the superior performance of TSPIN over SPIN, but also its stable evolution during iterations. Remarkably, compared to supervised fine-tuning, TSPIN achieves comparable or even better performance with only $25\\%$ samples, highlighting its effectiveness when faced with scarce annotated data.

Direct Preference Optimization (DPO) has emerged as a simple and effective approach for aligning large language models (LLMs) with human preferences, bypassing the need for a learned reward model. Despite its growing adoption, a fundamental question remains open: what characteristics of preference data are most critical for DPO performance? In this work, we provide a systematic study of how preference data distribution influences DPO, from both theoretical and empirical perspectives. We show that the quality of chosen responses plays a dominant role in optimizing the DPO objective, while the quality of rejected responses may have relatively limited impact. Our theoretical analysis characterizes the optimal response distribution under DPO and reveals how contrastiveness between responses helps primarily by improving the chosen samples. We further study an online DPO setting and show it effectively reduces to supervised fine-tuning on the chosen responses. Extensive experiments across diverse tasks confirm our findings: improving the quality of chosen responses consistently boosts performance regardless of the quality of the rejected responses. We also investigate the benefit of mixing the on-policy data. Our results interpret the mechanism behind some widely adopted strategies and offer practical insights for constructing high-impact preference datasets for LLM alignment.

Conventional federated learning (FL) assumes a closed world with a fixed total number of clients. In contrast, new clients continuously join the FL process in real-world scenarios, introducing new knowledge. This raises two critical demands: detecting new knowledge, i.e., knowledge discovery, and integrating it into the global model, i.e., knowledge adaptation. Existing research focuses on coarse-grained knowledge discovery, and often sacrifices source domain performance and adaptation efficiency. To this end, we propose a fine-grained federated domain adaptation approach in open set (Gains). Gains splits the model into an encoder and a classifier, empirically revealing features extracted by the encoder are sensitive to domain shifts while classifier parameters are sensitive to class increments. Based on this, we develop fine-grained knowledge discovery and contribution-driven aggregation techniques to identify and incorporate new knowledge. Additionally, an anti-forgetting mechanism is designed to preserve source domain performance, ensuring balanced adaptation. Experimental results on multi-domain datasets across three typical data-shift scenarios demonstrate that Gains significantly outperforms other baselines in performance for both source-domain and target-domain clients. Code is available at: https://github.com/Zhong-Zhengyi/Gains.

While deep learning has achieved remarkable success across many domains, it has historically underperformed on tabular learning tasks, which remain dominated by gradient boosting decision trees. However, recent advancements are paving the way for Tabular Foundation Models, which can leverage real-world knowledge and generalize across diverse datasets, particularly when the data contains free-text. Although incorporating language model capabilities into tabular tasks has been explored, most existing methods utilize static, target-agnostic textual representations, limiting their effectiveness. We introduce TabSTAR: a Tabular Foundation Model with Semantically Target-Aware Representations. TabSTAR is designed to enable transfer learning on tabular data with textual features, with an architecture free of dataset-specific parameters. It unfreezes a pretrained text encoder and takes as input target tokens, which provide the model with the context needed to learn task-specific embeddings. TabSTAR achieves state-of-the-art performance for both medium- and large-sized datasets across known benchmarks of classification tasks with text features, and its pretraining phase exhibits scaling laws in the number of datasets, offering a pathway for further performance improvements.

The remarkable performance of Large Language Models (LLMs) can be enhanced with test-time computation, which relies on external tools and even other deep learning models. However, existing approaches for integrating non-text modality representations into LLMs typically require additional costly supervised training, restricting on-the-fly adaptation to new domains and modalities. In this work, we explore the feasibility of integrating representations from non-text foundational models (FMs) into text-based LLMs in a training-free manner. We propose In-Context Representation Learning (ICRL) as a proof-of-concept to allow LLMs to adaptively utilize non-text modality representations with few-shot learning. Unlike traditional in-context learning, which incorporates text-label pairs, ICRL replaces text inputs with FM representations, enabling the LLM to perform multi-modal inference without fine-tuning. We evaluate ICRL on a suite of tasks in the molecular domain, investigating three core research questions: (i) how to map FM representations into LLMs in a training-free manner, (ii) what factors influence ICRL performance, and (iii) what mechanisms underlie the effectiveness of ICRL. To the best of our knowledge, ICRL is the first training-free framework for integrating non-text modality representations into text-based LLMs, presenting a promising direction for adaptable, multi-modal generalization.

Continual Test-Time Adaptation (CTTA) aims to quickly fine-tune the model during the test phase so that it can adapt to multiple unknown downstream domain distributions without pre-acquiring downstream domain data. To this end, existing advanced CTTA methods mainly reduce the catastrophic forgetting of historical knowledge caused by irregular switching of downstream domain data by restoring the initial model or reusing historical models. However, these methods are usually accompanied by serious insufficient learning of new knowledge and interference from potentially harmful historical knowledge, resulting in severe performance degradation. To this end, we propose a class-aware domain Knowledge Fusion and Fission method for continual test-time adaptation, called KFF, which adaptively expands and merges class-aware domain knowledge in old and new domains according to the test-time data from different domains, where discriminative historical knowledge can be dynamically accumulated. Specifically, considering the huge domain gap within streaming data, a domain Knowledge FIssion (KFI) module is designed to adaptively separate new domain knowledge from a paired class-aware domain prompt pool, alleviating the impact of negative knowledge brought by old domains that are distinct from the current domain. Besides, to avoid the cumulative computation and storage overheads from continuously fissioning new knowledge, a domain Knowledge FUsion (KFU) module is further designed to merge the fissioned new knowledge into the existing knowledge pool with minimal cost, where a greedy knowledge dynamic merging strategy is designed to improve the compatibility of new and old knowledge while keeping the computational efficiency.

We study how to fine-tune LLMs using user-edit deployment data consisting of a set of context, an agent's response, and user edits. This deployment data is naturally generated by users in applications such as LLMs-based writing assistants and coding agents. The _natural_ origin of user edits makes it a desired source for adapting and personalizing of LLMs. In this setup, there emerges a unification of various feedback types namely preferences, supervised labels, and cost that are typically studied separately in the literature. In this paper, we initiate the theoretical investigation of learning from user edits. We first derive bounds for learning algorithms that learn from each of these feedback types. We prove that these algorithms have different trade-offs depending upon the user, data distribution, and model class. We then propose a simple ensembling procedure to jointly learn from these feedback types. On two domains from Gao et al. 2024, we show our ensembling procedure outperforms these methods that learn from individual feedback. Further, we show that our proposed procedure can robustly adapt to different user-edit distributions at test time.

Pathology whole slide image (WSI) analysis is vital for disease diagnosis and understanding. While foundation models (FMs) have driven recent advances, their scalability in pathology remains a key challenge. In particular, vision-language (VL) pathology FMs align visual features with language annotation for downstream tasks, but they rely heavily on large-scale image-text paired data, which is scarce thus limiting generalization. On the other hand, vision-only pathology FMs can leverage abundant unlabeled data via self-supervised learning (SSL). However, current approaches often use the [CLS] token from tile-level ViTs as slide-level input for efficiency (a tile with 224×224 pixels composed of 196 patches with 16×16 pixels). This SSL pretrained [CLS] token lacks alignment with downstream objectives, limiting effectiveness. We find that spatial patch tokens retain a wealth of informative features beneficial for downstream tasks, but utilizing all of them incurs up to 200× higher computation and storage costs compared [CLS] token only (e.g., 196 tokens per ViT$_{224}$). This highlights a fundamental trade-off between efficiency and representational richness to build scalable pathology FMs. To address this, we propose a feature distillation framework via vector-quantization (VQ) that compresses patch tokens into discrete indices and reconstructs them via a decoder, achieving 64× compression (1024 → 16 dimensions) while preserving fidelity. We further introduce a multi-scale VQ (MSVQ) strategy, enhancing both reconstruction and providing SSL supervision for slide-level pretraining. Built upon MSVQ features and supervision signals, we design a progressive convolutional module and a slide-level SSL objective to learn spatially rich representations for downstream WSI tasks. Extensive experiments across multiple datasets demonstrate that our approach achieves state-of-the-art performance, offering a scalable and effective solution for high-performing pathology FMs in WSI analysis.

Test-time adaptation (TTA) methods have gained significant attention for enhancing the performance of vision-language models (VLMs) such as CLIP during inference, without requiring additional labeled data. However, current TTA researches generally suffer from major limitations such as duplication of baseline results, limited evaluation metrics, inconsistent experimental settings, and insufficient analysis. These problems hinder fair comparisons between TTA methods and make it difficult to assess their practical strengths and weaknesses. To address these challenges, we introduce TTA-VLM, a comprehensive benchmark for evaluating TTA methods on VLMs. Our benchmark implements 8 episodic TTA and 7 online TTA methods within a unified and reproducible framework, and evaluates them across 15 widely used datasets. Unlike prior studies focused solely on CLIP, we extend the evaluation to SigLIP—a model trained with a Sigmoid loss—and include training-time tuning methods such as CoOp, MaPLe, and TeCoA to assess generality. Beyond classification accuracy, TTA-VLM incorporates various evaluation metrics, including robustness, calibration, out-of-distribution detection, and stability, enabling a more holistic assessment of TTA methods. Through extensive experiments, we find that 1) existing TTA methods produce limited gains compared to the previous pioneering work; 2) current TTA methods exhibit poor collaboration with training-time fine-tuning methods; 3) accuracy gains frequently come at the cost of reduced model trustworthiness. We release TTA-VLM to provide fair comparison and comprehensive evaluation of TTA methods for VLMs, and we hope it encourages the community to develop more reliable and generalizable TTA strategies. The code is available in https://github.com/TomSheng21/tta-vlm.

Effective data selection is critical for efficient training of modern Large Language Models (LLMs). This paper introduces Influence Distillation, a novel, mathematically-justified framework for data selection that employs second-order information to optimally weight training samples. By distilling each sample's influence on a target distribution, our method assigns model-specific weights that are used to select training data for LLM fine-tuning, guiding it toward strong performance on the target domain. We derive these optimal weights for both Gradient Descent and Adam optimizers. To ensure scalability and reduce computational cost, we propose a $\textit{landmark-based approximation}$: influence is precisely computed for a small subset of "landmark" samples and then efficiently propagated to all other samples to determine their weights. We validate Influence Distillation by applying it to instruction tuning on the Tulu V2 dataset, targeting a range of tasks including GSM8k, SQuAD, and MMLU, across several models from the Llama and Qwen families. Experiments show that Influence Distillation matches or outperforms state-of-the-art performance while achieving up to $3.5\times$ faster selection.

Electroencephalography (EEG) has wide-ranging applications, from clinical diagnosis to brain-computer interfaces (BCIs). With the increasing volume and variety of EEG data, there has been growing interest in establishing foundation models (FMs) to scale up and generalize neural decoding. Despite showing early potential, applying FMs to EEG remains challenging due to substantial inter-subject, inter-task, and inter-condition variability, as well as diverse electrode configurations across recording setups. To tackle these open challenges, we propose **NeurIPT**, a foundation model tailored for diverse EEG-based **Neur**al **I**nterfaces with a **P**re-trained **T**ransformer by capturing both homogeneous and heterogeneous spatio-temporal characteristics inherent in EEG signals. Temporally, we introduce Amplitude-Aware Masked Pretraining (AAMP), masking based on signal amplitude rather than random intervals, to learn robust representations across varying signal intensities beyond local interpolation. Moreover, this temporal representation is enhanced by a progressive Mixture-of-Experts (MoE) architecture, where specialized expert subnetworks are progressively introduced at deeper layers, adapting effectively to the diverse temporal characteristics of EEG signals. Spatially, NeurIPT leverages the 3D physical coordinates of electrodes, enabling effective transfer across varying EEG settings, and develops Intra-Inter Lobe Pooling (IILP) during fine-tuning to efficiently exploit regional brain features. Empirical evaluations across nine downstream BCI datasets, via fine-tuning and training from scratch, demonstrated NeurIPT consistently achieved state-of-the-art performance, highlighting its broad applicability and robust generalization. Our work pushes forward the state of FMs in EEG and offers insights into scalable and generalizable neural information processing systems.

Low-rank adaptation (LoRA) is a widely used method for parameter-efficient finetuning. However, existing LoRA variants lack mechanisms to explicitly disambiguate task-relevant information within the learned low-rank subspace, potentially limiting downstream performance. We propose Factorized Variational Autoencoder LoRA (FVAE-LoRA), which leverages a VAE to learn two distinct latent spaces. Our novel Evidence Lower Bound formulation explicitly promotes factorization between the latent spaces, dedicating one latent space to task-salient features and the other to residual information. Extensive experiments on text, audio, and image tasks demonstrate that FVAE-LoRA consistently outperforms standard LoRA. Moreover, spurious correlation evaluations confirm that FVAE-LoRA better isolates task-relevant signals, leading to improved robustness under distribution shifts. Our code is publicly available at: https://github.com/idiap/FVAE-LoRA

Fine-tuning large language models (LLMs) using diverse datasets is crucial for enhancing their overall performance across various domains. In practical scenarios, existing methods based on modeling the mixture proportions of data composition often struggle with data whose domain labels are missing, imprecise or non-normalized, while methods based on data selection usually encounter difficulties in balancing multi-domain performance. To address these challenges, in this work, we investigate the role of data diversity in enhancing the overall abilities of LLMs by empirically constructing contrastive data pools and theoretically deriving explanations. Building upon the insights gained, we propose a new method that gives the LLM a dual identity: an output model to cognitively probe and select data based on diversity reward, as well as an input model to be tuned with the selected data. Extensive experiments show that the proposed method notably boosts performance across domain-undetermined data and a series of foundational downstream tasks when applied to various advanced LLMs. We release our code and hope this study can shed light on the understanding of data diversity and advance feedback-driven data-model co-design for LLMs.

Modern optimization algorithms that incorporate momentum and adaptive step-size offer improved performance in numerous challenging deep learning tasks. However, their effectiveness is often highly sensitive to the choice of hyperparameters, especially the step-size. Tuning these parameters is often difficult, resource-intensive, and time-consuming. Therefore, recent efforts have been directed toward enhancing the stability of optimizers across a wide range of hyperparameter choices [Schaipp et al., 2024]. In this paper, we introduce an algorithm that matches the performance of state-of-the-art optimizers while improving stability to the choice of the step-size hyperparameter through a novel adaptation of the ${\sf NGN}$ step-size method [Orvieto and Xiao, 2024]. Specifically, we propose a momentum-based version ${\sf NGN}$-${\sf M}$ that attains the standard convergence rate of $\mathcal{O}(1/\sqrt{K})$ under less restrictive assumptions, without the need for interpolation condition or assumptions of bounded stochastic gradients or iterates, in contrast to previous approaches. Additionally, we empirically demonstrate that the combination of the ${\sf NGN}$ step-size with momentum results in enhanced robustness to the choice of the step-size hyperparameter while delivering performance that is comparable to or surpasses other state-of-the-art optimizers.

Quantization and fine-tuning are crucial for deploying large language models (LLMs) on resource-constrained edge devices. However, fine-tuning quantized models presents significant challenges, primarily stemming from: First, the mismatch in data types between the low-precision quantized weights (e.g., 4-bit) and the high-precision adaptation weights (e.g., 16-bit). This mismatch limits the computational efficiency advantage offered by quantized weights during inference. Second, potential accuracy degradation when merging these high-precision adaptation weights into the low-precision quantized weights, as the adaptation weights often necessitate approximation or truncation. Third, as far as we know, no existing methods support the lossless merging of adaptation while adjusting all quantized weights. To address these challenges, we introduce lossless ternary adaptation for quantization-aware fine-tuning (LoTA-QAF). This is a novel fine-tuning method specifically designed for quantized LLMs, enabling the lossless merging of ternary adaptation weights into quantized weights and the adjustment of all quantized weights. LoTA-QAF operates through a combination of: i) A custom-designed ternary adaptation (TA) that aligns ternary weights with the quantization grid and uses these ternary weights to adjust quantized weights. ii) A TA-based mechanism that enables the lossless merging of adaptation weights. iii) Ternary signed gradient descent (t-SignSGD) for updating the TA weights. We apply LoTA-QAF to Llama-3.1/3.3 and Qwen-2.5 model families and validate its effectiveness on several downstream tasks. On the MMLU benchmark, our method effectively recovers performance for quantized models, surpassing 16-bit LoRA by up to 5.14\%. For task-specific fine-tuning, 16-bit LoRA achieves superior results, but LoTA-QAF still outperforms other methods. Code is available in github.com/KingdalfGoodman/LoTA-QAF.