NeurIPS 2024 论文列表

Conference on Neural Information Processing Systems

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4,562篇论文

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    3828.4%
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    4,06489.1%
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    441.0%

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Kermut: Composite kernel regression for protein variant effects

Peter Mørch Groth, Mads Herbert Kerrn, Lars Olsen, Jesper Salomon, Wouter Boomsma

展开摘要

Reliable prediction of protein variant effects is crucial for both protein optimization and for advancing biological understanding. For practical use in protein engineering, it is important that we can also provide reliable uncertainty estimates for our predictions, and while prediction accuracy has seen much progress in recent years, uncertainty metrics are rarely reported. We here provide a Gaussian process regression model, Kermut, with a novel composite kernel for modeling mutation similarity, which obtains state-of-the-art performance for supervised protein variant effect prediction while also offering estimates of uncertainty through its posterior. An analysis of the quality of the uncertainty estimates demonstrates that our model provides meaningful levels of overall calibration, but that instance-specific uncertainty calibration remains more challenging.

Spotlight
Certified Adversarial Robustness via Randomized $\alpha$-Smoothing for Regression Models

Aref Miri Rekavandi, Farhad Farokhi, Olga Ohrimenko, Benjamin I. P. Rubinstein

展开摘要

Certified adversarial robustness of large-scale deep networks has progressed substantially after the introduction of randomized smoothing. Deep net classifiers are now provably robust in their predictions against a large class of threat models, including $\ell_1$, $\ell_2$, and $\ell_\infty$ norm-bounded attacks. Certified robustness analysis by randomized smoothing has not been performed for deep regression networks where the output variable is continuous and unbounded. In this paper, we extend the existing results for randomized smoothing into regression models using powerful tools from robust statistics, in particular, $\alpha$-trimming filter as the smoothing function. Adjusting the hyperparameter $\alpha$ achieves a smooth trade-off between desired certified robustness and utility. For the first time, we propose a benchmark for certified robust regression in visual positioning systems using the Cambridge Landmarks dataset where robustness analysis is essential for autonomous navigation of AI agents and self-driving cars. Code is publicly available at \url{https://github.com/arekavandi/Certified_adv_RRegression/}.

Poster
Exploring Behavior-Relevant and Disentangled Neural Dynamics with Generative Diffusion Models

Yule Wang, Chengrui Li, Weihan Li, Anqi Wu

展开摘要

Understanding the neural basis of behavior is a fundamental goal in neuroscience. Current research in large-scale neuro-behavioral data analysis often relies on decoding models, which quantify behavioral information in neural data but lack details on behavior encoding. This raises an intriguing scientific question: "how can we enable in-depth exploration of neural representations in behavioral tasks, revealing interpretable neural dynamics associated with behaviors". However, addressing this issue is challenging due to the varied behavioral encoding across different brain regions and mixed selectivity at the population level. To tackle this limitation, our approach, named ("BeNeDiff"), first identifies a fine-grained and disentangled neural subspace using a behavior-informed latent variable model. It then employs state-of-the-art generative diffusion models to synthesize behavior videos that interpret the neural dynamics of each latent factor. We validate the method on multi-session datasets containing widefield calcium imaging recordings across the dorsal cortex. Through guiding the diffusion model to activate individual latent factors, we verify that the neural dynamics of latent factors in the disentangled neural subspace provide interpretable quantifications of the behaviors of interest. At the same time, the neural subspace in BeNeDiff demonstrates high disentanglement and neural reconstruction quality.

Poster
MOTE-NAS: Multi-Objective Training-based Estimate for Efficient Neural Architecture Search

Yuming Zhang, Jun Wei Hsieh, Xin Li, Ming-Ching Chang, Chun-Chieh Lee, Kuo-Chin Fan

展开摘要

Neural Architecture Search (NAS) methods seek effective optimization toward performance metrics regarding model accuracy and generalization while facing challenges regarding search costs and GPU resources. Recent Neural Tangent Kernel (NTK) NAS methods achieve remarkable search efficiency based on a training-free model estimate; however, they overlook the non-convex nature of the DNNs in the search process. In this paper, we develop Multi-Objective Training-based Estimate (MOTE) for efficient NAS, retaining search effectiveness and achieving the new state-of-the-art in the accuracy and cost trade-off. To improve NTK and inspired by the Training Speed Estimation (TSE) method, MOTE is designed to model the actual performance of DNNs from macro to micro perspective by draw loss landscape and convergence speed simultaneously. Using two reduction strategies, the MOTE is generated based on a reduced architecture and a reduced dataset. Inspired by evolutionary search, our iterative ranking-based, coarse-to-fine architecture search is highly effective. Experiments on NASBench-201 show MOTE-NAS achieves 94.32% accuracy on CIFAR-10, 72.81% on CIFAR-100, and 46.38% on ImageNet-16-120, outperforming NTK-based NAS approaches. An evaluation-free (EF) version of MOTE-NAS delivers high efficiency in only 5 minutes, delivering a model more accurate than KNAS.

Poster
AMOR: A Recipe for Building Adaptable Modular Knowledge Agents Through Process Feedback

Jian Guan, Wei Wu, zujie wen, Peng Xu, Hongning Wang, Minlie Huang

展开摘要

The notable success of large language models (LLMs) has sparked an upsurge in building language agents to complete various complex tasks. We present AMOR, an agent framework based on open-source LLMs, which reasons with external knowledge bases and adapts to specific domains through human supervision to the reasoning process. AMOR builds reasoning logic over a finite state machine (FSM) that solves problems through autonomous executions and transitions over disentangled modules. This allows humans to provide direct feedback to the individual modules, and thus naturally forms process supervision. Based on this reasoning and feedback framework, we develop AMOR through two-stage fine-tuning: warm-up and adaptation. The former fine-tunes the LLM with examples automatically constructed from various public datasets, enabling AMOR to generalize across different knowledge environments, while the latter tailors AMOR to specific domains using process feedback. Extensive experiments across multiple domains demonstrate the advantage of AMOR to strong baselines, thanks to its FSM-based reasoning and process feedback mechanism. The code and data are publicly available at https://github.com/JianGuanTHU/AMOR.

Poster
Autoregressive Image Diffusion: Generation of Image Sequence and Application in MRI

Guanxiong Luo, Shoujin Huang, Martin Uecker

展开摘要

Magnetic resonance imaging (MRI) is a widely used non-invasive imaging modality. However, a persistent challenge lies in balancing image quality with imaging speed. This trade-off is primarily constrained by k-space measurements, which traverse specific trajectories in the spatial Fourier domain (k-space). These measurements are often undersampled to shorten acquisition times, resulting in image artifacts and compromised quality. Generative models learn image distributions and can be used to reconstruct high-quality images from undersampled k-space data. In this work, we present the autoregressive image diffusion (AID) model for image sequences and use it to sample the posterior for accelerated MRI reconstruction. The algorithm incorporates both undersampled k-space and pre-existing information. Models trained with fastMRI dataset are evaluated comprehensively. The results show that the AID model can robustly generate sequentially coherent image sequences. In MRI applications, the AID can outperform the standard diffusion model and reduce hallucinations, due to the learned inter-image dependencies. The project code is available at https://github.com/mrirecon/aid.

Poster
Sparsity-Agnostic Linear Bandits with Adaptive Adversaries

Tianyuan Jin, Kyoungseok Jang, Nicolò Cesa-Bianchi

展开摘要

We study stochastic linear bandits where, in each round, the learner receives a set of actions (i.e., feature vectors), from which it chooses an element and obtains a stochastic reward. The expected reward is a fixed but unknown linear function of the chosen action. We study \emph{sparse} regret bounds, that depend on the number $S$ of non-zero coefficients in the linear reward function. Previous works focused on the case where $S$ is known, or the action sets satisfy additional assumptions. In this work, we obtain the first sparse regret bounds that hold when $S$ is unknown and the action sets are adversarially generated. Our techniques combine online to confidence set conversions with a novel randomized model selection approach over a hierarchy of nested confidence sets. When $S$ is known, our analysis recovers state-of-the-art bounds for adversarial action sets. We also show that a variant of our approach, using Exp3 to dynamically select the confidence sets, can be used to improve the empirical performance of stochastic linear bandits while enjoying a regret bound with optimal dependence on the time horizon.

Poster
Generalization Bound and Learning Methods for Data-Driven Projections in Linear Programming

Shinsaku Sakaue, Taihei Oki

展开摘要

How to solve high-dimensional linear programs (LPs) efficiently is a fundamental question. Recently, there has been a surge of interest in reducing LP sizes using *random projections*, which can accelerate solving LPs independently of improving LP solvers. This paper explores a new direction of *data-driven projections*, which use projection matrices learned from data instead of random projection matrices. Given training data of $n$-dimensional LPs, we learn an $n\times k$ projection matrix with $n > k$. When addressing a future LP instance, we reduce its dimensionality from $n$ to $k$ via the learned projection matrix, solve the resulting LP to obtain a $k$-dimensional solution, and apply the learned matrix to it to recover an $n$-dimensional solution. On the theoretical side, a natural question is: how much data is sufficient to ensure the quality of recovered solutions? We address this question based on the framework of *data-driven algorithm design*, which connects the amount of data sufficient for establishing generalization bounds to the *pseudo-dimension* of performance metrics. We obtain an $\tilde{\mathrm{O}}(nk^2)$ upper bound on the pseudo-dimension, where $\tilde{\mathrm{O}}$ compresses logarithmic factors. We also provide an $\Omega(nk)$ lower bound, implying our result is tight up to an $\tilde{\mathrm{O}}(k)$ factor. On the practical side, we explore two simple methods for learning projection matrices: PCA- and gradient-based methods. While the former is relatively efficient, the latter can sometimes achieve better solution quality. Experiments demonstrate that learning projection matrices from data is indeed beneficial: it leads to significantly higher solution quality than the existing random projection while greatly reducing the time for solving LPs.

Poster
Multi-Object 3D Grounding with Dynamic Modules and Language-Informed Spatial Attention

Haomeng Zhang, Chiao An Yang, Raymond A. Yeh

展开摘要

Multi-object 3D Grounding involves locating 3D boxes based on a given query phrase from a point cloud. It is a challenging and significant task that has numerous applications in visual understanding, human-computer interaction, and robotics. To tackle this challenge, we introduce D-LISA, a two-stage approach that incorporates three innovations. First, a dynamic vision module that enables a variable and learnable number of box proposals. Second, a dynamic camera positioning that extracts features for each proposal. Third, a language-informed spatial attention module that better reasons over the proposals to output the final prediction. Empirically, experiments show that our method outperforms the state-of-the-art methods on multi-object 3D grounding by 12.8% (absolute) and is competitive in single-object 3D grounding.

Poster
MV2Cyl: Reconstructing 3D Extrusion Cylinders from Multi-View Images

Eunji Hong, Nguyen Minh Hieu, Mikaela Angelina Uy, Minhyuk Sung

展开摘要

We present MV2Cyl, a novel method for reconstructing 3D from 2D multi-view images, not merely as a field or raw geometry but as a sketch-extrude CAD. Extracting extrusion cylinders from raw 3D geometry has been extensively researched in computer vision, while the processing of 3D data through neural networks has remained a bottleneck. Since 3D scans are generally accompanied by multi-view images, leveraging 2D convolutional neural networks allows these images to be exploited as a rich source for extracting extrusion cylinder information. However, we observe that extracting only the surface information of the extrudes and utilizing it results in suboptimal outcomes due to the challenges in the occlusion and surface segmentation. By synergizing with the extracted base curve information, we achieve the optimal reconstruction result with the best accuracy in 2D sketch and extrude parameter estimation. Our experiments, comparing our method with previous work that takes a raw 3D point cloud as input, demonstrate the effectiveness of our approach by taking advantage of multi-view images.

Poster
Con4m: Context-aware Consistency Learning Framework for Segmented Time Series Classification

Junru Chen, Tianyu Cao, Jing Xu, Jiahe Li, Zhilong Chen, Tao Xiao, Yang Yang

展开摘要

Time Series Classification (TSC) encompasses two settings: classifying entire sequences or classifying segmented subsequences. The raw time series for segmented TSC usually contain Multiple classes with Varying Duration of each class (MVD). Therefore, the characteristics of MVD pose unique challenges for segmented TSC, yet have been largely overlooked by existing works. Specifically, there exists a natural temporal dependency between consecutive instances (segments) to be classified within MVD. However, mainstream TSC models rely on the assumption of independent and identically distributed (i.i.d.), focusing on independently modeling each segment. Additionally, annotators with varying expertise may provide inconsistent boundary labels, leading to unstable performance of noise-free TSC models. To address these challenges, we first formally demonstrate that valuable contextual information enhances the discriminative power of classification instances. Leveraging the contextual priors of MVD at both the data and label levels, we propose a novel consistency learning framework Con4m, which effectively utilizes contextual information more conducive to discriminating consecutive segments in segmented TSC tasks, while harmonizing inconsistent boundary labels for training. Extensive experiments across multiple datasets validate the effectiveness of Con4m in handling segmented TSC tasks on MVD. The source code is available at https://github.com/MrNobodyCali/Con4m.

Poster
INDICT: Code Generation with Internal Dialogues of Critiques for Both Security and Helpfulness

Hung Le, Doyen Sahoo, Yingbo Zhou, Caiming Xiong, Silvio Savarese

展开摘要

Large language models (LLMs) for code are typically trained to align with natural language instructions to closely follow their intentions and requirements. However, in many practical scenarios, it becomes increasingly challenging for these models to navigate the intricate boundary between helpfulness and safety, especially against highly complex yet potentially malicious instructions. In this work, we introduce INDICT: a new framework that empowers LLMs with Internal Dialogues of Critiques for both safety and helpfulness guidance. The internal dialogue is a dual cooperative system between a safety-driven critic and a helpfulness-driven critic. Each critic provides analysis against the given task and corresponding generated response, equipped with external knowledge queried through relevant code snippets and tools like web search and code interpreter. We engage the dual critic system in both code generation stage as well as code execution stage, providing preemptive and post-hoc guidance respectively to LLMs. We evaluated INDICT on 8 diverse tasks across 8 programming languages from 5 benchmarks, using LLMs from 7B to 70B parameters. We observed that our approach can provide an advanced level of critiques of both safety and helpfulness analysis, significantly improving the quality of output codes (+10% absolute improvements in all models).

Poster
Query-Based Adversarial Prompt Generation

Jonathan Hayase, Ema Borevković, Nicholas Carlini, Florian Tramèr, Milad Nasr

展开摘要

Recent work has shown it is possible to construct adversarial examples that cause aligned language models to emit harmful strings or perform harmful behavior. Existing attacks work either in the white-box setting (with full access to the model weights), or through _transferability_: the phenomenon that adversarial examples crafted on one model often remain effective on other models. We improve on prior work with a _query-based_ attack that leverages API access to a remote language model to construct adversarial examples that cause the model to emit harmful strings with (much) higher probability than with transfer-only attacks. We validate our attack on GPT-3.5 and OpenAI's safety classifier; we can cause GPT-3.5 to emit harmful strings that current transfer attacks fail at, and we can evade the OpenAI and Llama Guard safety classifiers with nearly 100% probability.

Poster
Instructor-inspired Machine Learning for Robust Molecular Property Prediction

Fang Wu, Shuting Jin, Siyuan Li, Stan Z. Li

展开摘要

Machine learning catalyzes a revolution in chemical and biological science. However, its efficacy is heavily dependent on the availability of labeled data, and annotating biochemical data is extremely laborious. To surmount this data sparsity challenge, we present an instructive learning algorithm named InstructMol to measure pseudo-labels' reliability and help the target model leverage large-scale unlabeled data. InstructMol does not require transferring knowledge between multiple domains, which avoids the potential gap between the pretraining and fine-tuning stages. We demonstrated the high accuracy of InstructMol on several real-world molecular datasets and out-of-distribution (OOD) benchmarks.

Poster
Agent Planning with World Knowledge Model

Shuofei Qiao, Runnan Fang, Ningyu Zhang, Yuqi Zhu, Xiang Chen, Shumin Deng, Yong Jiang, Pengjun Xie, Fei Huang, Huajun Chen

展开摘要

Recent endeavors towards directly using large language models (LLMs) as agent models to execute interactive planning tasks have shown commendable results. Despite their achievements, however, they still struggle with brainless trial-and-error in global planning and generating hallucinatory actions in local planning due to their poor understanding of the "real" physical world. Imitating humans' mental world knowledge model which provides global prior knowledge before the task and maintains local dynamic knowledge during the task, in this paper, we introduce parametric World Knowledge Model (WKM) to facilitate agent planning. Concretely, we steer the agent model to self-synthesize knowledge from both expert and sampled trajectories. Then we develop WKM, providing prior task knowledge to guide the global planning and dynamic state knowledge to assist the local planning. Experimental results on three real-world simulated datasets with Mistral-7B, Gemma-7B, and Llama-3-8B demonstrate that our method can achieve superior performance compared to various strong baselines. Besides, we analyze to illustrate that our WKM can effectively alleviate the blind trial-and-error and hallucinatory action issues, providing strong support for the agent's understanding of the world. Other interesting findings include: 1) our instance-level task knowledge can generalize better to unseen tasks, 2) weak WKM can guide strong agent model planning, and 3) unified WKM training has promising potential for further development.

Poster
Does Worst-Performing Agent Lead the Pack? Analyzing Agent Dynamics in Unified Distributed SGD

Jie Hu, Yi-Ting Ma, Do Young Eun

展开摘要

Distributed learning is essential to train machine learning algorithms across *heterogeneous* agents while maintaining data privacy. We conduct an asymptotic analysis of Unified Distributed SGD (UD-SGD), exploring a variety of communication patterns, including decentralized SGD and local SGD within Federated Learning (FL), as well as the increasing communication interval in the FL setting. In this study, we assess how different sampling strategies, such as *i.i.d.* sampling, shuffling, and Markovian sampling, affect the convergence speed of UD-SGD by considering the impact of agent dynamics on the limiting covariance matrix as described in the Central Limit Theorem (CLT). Our findings not only support existing theories on linear speedup and asymptotic network independence, but also theoretically and empirically show how efficient sampling strategies employed by individual agents contribute to overall convergence in UD-SGD. Simulations reveal that a few agents using highly efficient sampling can achieve or surpass the performance of the majority employing moderately improved strategies, providing new insights beyond traditional analyses focusing on the worst-performing agent.

Poster
Stress-Testing Long-Context Language Models with Lifelong ICL and Task Haystack

Xiaoyue Xu, Qinyuan Ye, Xiang Ren

展开摘要

We introduce Lifelong ICL, a problem setting that challenges long-context language models (LMs) to learn a sequence of language tasks through in-context learning (ICL). We further introduce Task Haystack, an evaluation suite dedicated to assessing and diagnosing how long-context LMs utilizes contexts in Lifelong ICL. When given a task instruction and test inputs, long-context LMs are expected to leverage the relevant demonstrations in the Lifelong ICL prompt, avoid distraction and interference from other tasks, and achieve test accuracies that are not significantly worse than those of the Single-task ICL baseline. Task Haystack draws inspiration from the widely-adopted “needle-in-a-haystack” (NIAH) evaluation, but presents distinct new challenges. It requires models (1) to utilize the contexts at a deeper level, rather than resorting to simple copying and pasting; (2) to navigate through long streams of evolving topics and tasks, proxying the complexities and dynamism of contexts in real-world scenarios. Additionally, Task Haystack inherits the controllability of NIAH, providing model developers with tools and visualizations to identify model vulnerabilities effectively. We benchmark 14 long-context LMs using Task Haystack, finding that frontier models like GPT-4o still struggle with the setting, failing on 15% of cases on average. Most open-weight models further lack behind by a large margin, with failure rates reaching up to 61%. In our controlled analysis, we identify factors such as distraction and recency bias as contributors to these failure cases. Further, performance declines when task instructions are paraphrased at test time or when ICL demonstrations are repeated excessively, raising concerns about the robustness, instruction understanding, and true context utilization of long-context LMs. We release our code and data to encourage future research that investigates and addresses these limitations.

Poster
Are Large Language Models Good Statisticians?

Yizhang Zhu, Shiyin Du, Boyan Li, Yuyu Luo, Nan Tang

展开摘要

Large Language Models (LLMs) have demonstrated impressive capabilities across a range of scientific tasks including mathematics, physics, and chemistry. Despite their successes, the effectiveness of LLMs in handling complex statistical tasks remains systematically under-explored. To bridge this gap, we introduce StatQA, a new benchmark designed for statistical analysis tasks. StatQA comprises 11,623 examples tailored to evaluate LLMs' proficiency in specialized statistical tasks and their applicability assessment capabilities, particularly for hypothesis testing methods. We systematically experiment with representative LLMs using various prompting strategies and show that even state-of-the-art models such as GPT-4o achieve a best performance of only 64.83%, indicating significant room for improvement. Notably, while open-source LLMs (e.g. LLaMA-3) show limited capability, those fine-tuned ones exhibit marked improvements, outperforming all in-context learning-based methods (e.g. GPT-4o). Moreover, our comparative human experiments highlight a striking contrast in error types between LLMs and humans: LLMs primarily make applicability errors, whereas humans mostly make statistical task confusion errors. This divergence highlights distinct areas of proficiency and deficiency, suggesting that combining LLM and human expertise could lead to complementary strengths, inviting further investigation into their collaborative potential. Our source code and data are available at https://statqa.github.io/.

Poster
Kernel Language Entropy: Fine-grained Uncertainty Quantification for LLMs from Semantic Similarities

Alexander V Nikitin, Jannik Kossen, Yarin Gal, Pekka Marttinen

展开摘要

Uncertainty quantification in Large Language Models (LLMs) is crucial for applications where safety and reliability are important. In particular, uncertainty can be used to improve the trustworthiness of LLMs by detecting factually incorrect model responses, commonly called hallucinations. Critically, one should seek to capture the model's semantic uncertainty, i.e., the uncertainty over the meanings of LLM outputs, rather than uncertainty over lexical or syntactic variations that do not affect answer correctness. To address this problem, we propose Kernel Language Entropy (KLE), a novel method for uncertainty estimation in white- and black-box LLMs. KLE defines positive semidefinite unit trace kernels to encode the semantic similarities of LLM outputs and quantifies uncertainty using the von Neumann entropy. It considers pairwise semantic dependencies between answers (or semantic clusters), providing more fine-grained uncertainty estimates than previous methods based on hard clustering of answers. We theoretically prove that KLE generalizes the previous state-of-the-art method called semantic entropy and empirically demonstrate that it improves uncertainty quantification performance across multiple natural language generation datasets and LLM architectures.

Poster
Accurate and Steady Inertial Pose Estimation through Sequence Structure Learning and Modulation

Yinghao Wu, chaoran wang, Lu Yin, Shihui Guo, Yipeng Qin

展开摘要

Transformer models excel at capturing long-range dependencies in sequential data, but lack explicit mechanisms to leverage structural patterns inherent in fixed-length input sequences. In this paper, we propose a novel sequence structure learning and modulation approach that endows Transformers with the ability to model and utilize such fixed-sequence structural properties for improved performance on inertial pose estimation tasks. Specifically, our method introduces a Sequence Structure Module (SSM) that utilizes structural information of fixed-length inertial sensor readings to adjust the input features of transformers. Such structural information can either be acquired by learning or specified based on users' prior knowledge. To justify the prospect of our approach, we show that i) injecting spatial structural information of IMUs/joints learned from data improves accuracy, while ii) injecting temporal structural information based on smooth priors reduces jitter (i.e., improves steadiness), in a spatial-temporal transformer solution for inertial pose estimation. Extensive experiments across multiple benchmark datasets demonstrate the superiority of our approach against state-of-the-art methods and has the potential to advance the design of the transformer architecture for fixed-length sequences.

Poster