NeurIPS 2024 论文列表

Conference on Neural Information Processing Systems

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4,562篇论文

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    3828.4%
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    4,06489.1%
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    441.0%

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ProtGO: Function-Guided Protein Modeling for Unified Representation Learning

Bozhen Hu, Cheng Tan, Yongjie Xu, Zhangyang Gao, Jun Xia, Lirong Wu, Stan Z. Li

展开摘要

Protein representation learning is indispensable for various downstream applications of artificial intelligence for bio-medicine research, such as drug design and function prediction. However, achieving effective representation learning for proteins poses challenges due to the diversity of data modalities involved, including sequence, structure, and function annotations. Despite the impressive capabilities of large language models in biomedical text modelling, there remains a pressing need for a framework that seamlessly integrates these diverse modalities, particularly focusing on the three critical aspects of protein information: sequence, structure, and function. Moreover, addressing the inherent data scale differences among these modalities is essential. To tackle these challenges, we introduce ProtGO, a unified model that harnesses a teacher network equipped with a customized graph neural network (GNN) and a Gene Ontology (GO) encoder to learn hybrid embeddings. Notably, our approach eliminates the need for additional functions as input for the student network, which shares the same GNN module. Importantly, we utilize a domain adaptation method to facilitate distribution approximation for guiding the training of the teacher-student framework. This approach leverages distributions learned from latent representations to avoid the alignment of individual samples. Benchmark experiments highlight that ProtGO significantly outperforms state-of-the-art baselines, clearly demonstrating the advantages of the proposed unified framework.

Poster
DarkSAM: Fooling Segment Anything Model to Segment Nothing

Ziqi Zhou, Yufei Song, Minghui Li, Shengshan Hu, Xianlong Wang, Leo Yu Zhang, Dezhong Yao, Hai Jin

展开摘要

Segment Anything Model (SAM) has recently gained much attention for its outstanding generalization to unseen data and tasks. Despite its promising prospect, the vulnerabilities of SAM, especially to universal adversarial perturbation (UAP) have not been thoroughly investigated yet. In this paper, we propose DarkSAM, the first prompt-free universal attack framework against SAM, including a semantic decoupling-based spatial attack and a texture distortion-based frequency attack. We first divide the output of SAM into foreground and background. Then, we design a shadow target strategy to obtain the semantic blueprint of the image as the attack target. DarkSAM is dedicated to fooling SAM by extracting and destroying crucial object features from images in both spatial and frequency domains. In the spatial domain, we disrupt the semantics of both the foreground and background in the image to confuse SAM. In the frequency domain, we further enhance the attack effectiveness by distorting the high-frequency components (i.e., texture information) of the image. Consequently, with a single UAP, DarkSAM renders SAM incapable of segmenting objects across diverse images with varying prompts. Experimental results on four datasets for SAM and its two variant models demonstrate the powerful attack capability and transferability of DarkSAM. Our codes are available at: https://github.com/CGCL-codes/DarkSAM.

Poster
Understanding the Expressive Power and Mechanisms of Transformer for Sequence Modeling

Mingze Wang, Weinan E

展开摘要

We conduct a systematic study of the approximation properties of Transformer for sequence modeling with long, sparse and complicated memory. We investigate the mechanisms through which different components of Transformer, such as the dot-product self-attention, positional encoding and feed-forward layer, affect its expressive power, and we study their combined effects through establishing explicit approximation rates. Our study reveals the roles of critical parameters in the Transformer, such as the number of layers and the number of attention heads. These theoretical insights are validated experimentally and offer natural suggestions for alternative architectures.

Poster
Private and Personalized Frequency Estimation in a Federated Setting

Amrith Setlur, Vitaly Feldman, Kunal Talwar

展开摘要

Motivated by the problem of next word prediction on user devices we introduce and study the problem of personalized frequency histogram estimation in a federated setting. In this problem, over some domain, each user observes a number of samples from a distribution which is specific to that user. The goal is to compute for all users a personalized estimate of the user's distribution with error measured in KL divergence. We focus on addressing two central challenges: statistical heterogeneity and protection of user privacy. Our approach to the problem relies on discovering and exploiting similar subpopulations of users which are often present and latent in real-world data, while minimizing user privacy leakage at the same time. We first present a non-private clustering-based algorithm for the problem, and give a provably joint differentially private version of it with a private data-dependent initialization scheme. Next, we propose a simple data model which is based on a mixture of Dirichlet distributions, to formally motivate our non-private algorithm and demonstrate some properties of its components. Finally, we provide an extensive empirical evaluation of our private and non-private algorithms under varying levels of statistical and size heterogeneity on the Reddit, StackOverflow, and Amazon Reviews datasets. Our results demonstrate significant improvements over standard and clustering-based baselines, and in particular, they show that it is possible to improve over direct personalization of a single global model.

Poster
Tight Bounds for Learning RUMs from Small Slates

Flavio Chierichetti, Mirko Giacchini, Ravi Kumar, Alessandro Panconesi, Andrew Tomkins

展开摘要

A Random Utility Model (RUM) is a classical model of user behavior defined by a distribution over $\mathbb{R}^n$. A user, presented with a subset of $\\{1,\ldots,n\\}$, will select the item of the subset with the highest utility, according to a utility vector drawn from the specified distribution. In practical settings, the subset is often of small size, as in the ``ten blue links'' of web search. In this paper, we consider a learning setting with complete information on user choices from subsets of size at most $k$. We show that $k=\Theta(\sqrt{n})$ is both necessary and sufficient to predict the distribution of all user choices with an arbitrarily small, constant error. Based on the upper bound, we obtain new algorithms for approximate RUM learning and variations thereof. Furthermore, we employ our lower bound for approximate RUM learning to derive lower bounds to fractional extensions of the well-studied $k$-deck and trace reconstruction problems.

Poster
BitsFusion: 1.99 bits Weight Quantization of Diffusion Model

Yang Sui, Yanyu Li, Anil Kag, Yerlan Idelbayev, Junli Cao, Ju Hu, Dhritiman Sagar, Bo Yuan, Sergey Tulyakov, Jian Ren

展开摘要

Diffusion-based image generation models have achieved great success in recent years by showing the capability of synthesizing high-quality content. However, these models contain a huge number of parameters, resulting in a significantly large model size. Saving and transferring them is a major bottleneck for various applications, especially those running on resource-constrained devices. In this work, we develop a novel weight quantization method that quantizes the UNet from Stable Diffusion v1.5 to $1.99$ bits, achieving a model with $7.9\times$ smaller size while exhibiting even better generation quality than the original one. Our approach includes several novel techniques, such as assigning optimal bits to each layer, initializing the quantized model for better performance, and improving the training strategy to dramatically reduce quantization error. Furthermore, we extensively evaluate our quantized model across various benchmark datasets and through human evaluation to demonstrate its superior generation quality.

Poster
Accelerating Non-Maximum Suppression: A Graph Theory Perspective

King-Siong Si, Lu Sun, Weizhan Zhang, Tieliang Gong, Jiahao Wang, Jiang Liu, Hao Sun

展开摘要

Non-maximum suppression (NMS) is an indispensable post-processing step in object detection. With the continuous optimization of network models, NMS has become the ``last mile'' to enhance the efficiency of object detection. This paper systematically analyzes NMS from a graph theory perspective for the first time, revealing its intrinsic structure. Consequently, we propose two optimization methods, namely QSI-NMS and BOE-NMS. The former is a fast recursive divide-and-conquer algorithm with negligible mAP loss, and its extended version (eQSI-NMS) achieves optimal complexity of $\mathcal{O}(n\log n)$. The latter, concentrating on the locality of NMS, achieves an optimization at a constant level without an mAP loss penalty. Moreover, to facilitate rapid evaluation of NMS methods for researchers, we introduce NMS-Bench, the first benchmark designed to comprehensively assess various NMS methods. Taking the YOLOv8-N model on MS COCO 2017 as the benchmark setup, our method QSI-NMS provides $6.2\times$ speed of original NMS on the benchmark, with a $0.1\%$ decrease in mAP. The optimal eQSI-NMS, with only a $0.3\%$ mAP decrease, achieves $10.7\times$ speed. Meanwhile, BOE-NMS exhibits $5.1\times$ speed with no compromise in mAP.

Poster
ALPS: Improved Optimization for Highly Sparse One-Shot Pruning for Large Language Models

Xiang Meng, Kayhan Behdin, Haoyue Wang, Rahul Mazumder

展开摘要

The impressive performance of Large Language Models (LLMs) across various natural language processing tasks comes at the cost of vast computational resources and storage requirements. One-shot pruning techniques offer a way to alleviate these burdens by removing redundant weights without the need for retraining. Yet, the massive scale of LLMs often forces current pruning approaches to rely on heuristics instead of optimization-based techniques, potentially resulting in suboptimal compression. In this paper, we introduce ALPS, an optimization-based framework that tackles the pruning problem using the operator splitting technique and a preconditioned conjugate gradient-based post-processing step. Our approach incorporates novel techniques to accelerate and theoretically guarantee convergence while leveraging vectorization and GPU parallelism for efficiency. ALPS substantially outperforms state-of-the-art methods in terms of the pruning objective and perplexity reduction, particularly for highly sparse models. On the LLaMA3-8B model with 70\% sparsity, ALPS achieves a 29\% reduction in test perplexity on the WikiText dataset and a 8\% improvement in zero-shot benchmark performance compared to existing methods. Our code is available at https://github.com/mazumder-lab/ALPS.

Poster
Near-Optimal Distributionally Robust Reinforcement Learning with General $L_p$ Norms

Pierre Clavier, Laixi Shi, Erwan Le Pennec, Eric Mazumdar, Adam Wierman, Matthieu Geist

展开摘要

To address the challenges of sim-to-real gap and sample efficiency in reinforcement learning (RL), this work studies distributionally robust Markov decision processes (RMDPs) --- optimize the worst-case performance when the deployed environment is within an uncertainty set around some nominal MDP. Despite recent efforts, the sample complexity of RMDPs has remained largely undetermined. While the statistical implications of distributional robustness in RL have been explored in some specific cases, the generalizability of the existing findings remains unclear, especially in comparison to standard RL. Assuming access to a generative model that samples from the nominal MDP, we examine the sample complexity of RMDPs using a class of generalized $L_p$ norms as the 'distance' function for the uncertainty set, under two commonly adopted $sa$-rectangular and $s$-rectangular conditions. Our results imply that RMDPs can be more sample-efficient to solve than standard MDPs using generalized $L_p$ norms in both $sa$- and $s$-rectangular cases, potentially inspiring more empirical research. We provide a near-optimal upper bound and a matching minimax lower bound for the $sa$-rectangular scenarios. For $s$-rectangular cases, we improve the state-of-the-art upper bound and also derive a lower bound using $L_\infty$ norm that verifies the tightness.

Poster
Neural collapse vs. low-rank bias: Is deep neural collapse really optimal?

Peter Súkeník, Christoph H. Lampert, Marco Mondelli

展开摘要

Deep neural networks (DNNs) exhibit a surprising structure in their final layer known as neural collapse (NC), and a growing body of works is currently investigated the propagation of neural collapse to earlier layers of DNNs -- a phenomenon called deep neural collapse (DNC). However, existing theoretical results are restricted to either linear models, the last two layers or binary classification. In contrast, we focus on non-linear models of arbitrary depth in multi-class classification and reveal a surprising qualitative shift. As soon as we go beyond two layers or two classes, DNC stops being optimal for the deep unconstrained features model (DUFM) -- the standard theoretical framework for the analysis of collapse. The main culprit is the low-rank bias of multi-layer regularization schemes. This bias leads to optimal solutions of even lower rank than the neural collapse. We support our theoretical findings with experiments on both DUFM and real data, which show the emergence of the low-rank structure in the solution found by gradient descent.

Poster
Mobility-LLM: Learning Visiting Intentions and Travel Preference from Human Mobility Data with Large Language Models

Letian Gong, Yan Lin, Xinyue Zhang, Yiwen Lu, Xuedi Han, Yichen Liu, Shengnan Guo, Youfang Lin, Huaiyu Wan

展开摘要

Location-based services (LBS) have accumulated extensive human mobility data on diverse behaviors through check-in sequences. These sequences offer valuable insights into users’ intentions and preferences. Yet, existing models analyzing check-in sequences fail to consider the semantics contained in these sequences, which closely reflect human visiting intentions and travel preferences, leading to an incomplete comprehension. Drawing inspiration from the exceptional semantic understanding and contextual information processing capabilities of large language models (LLMs) across various domains, we present Mobility-LLM, a novel framework that leverages LLMs to analyze check-in sequences for multiple tasks. Since LLMs cannot directly interpret check-ins, we reprogram these sequences to help LLMs comprehensively understand the semantics of human visiting intentions and travel preferences. Specifically, we introduce a visiting intention memory network (VIMN) to capture the visiting intentions at each record, along with a shared pool of human travel preference prompts (HTPP) to guide the LLM in understanding users’ travel preferences. These components enhance the model’s ability to extract and leverage semantic information from human mobility data effectively. Extensive experiments on four benchmark datasets and three downstream tasks demonstrate that our approach significantly outperforms existing models, underscoring the effectiveness of Mobility-LLM in advancing our understanding of human mobility data within LBS contexts.

Poster
Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure

Bozhen Hu, Cheng Tan, Jun Xia, Yue Liu, Lirong Wu, Jiangbin Zheng, Yongjie Xu, Yufei Huang, Stan Z. Li

展开摘要

Learning effective representations is imperative for comprehending proteins and deciphering their biological functions. Recent strides in language models and graph neural networks have empowered protein models to harness primary or tertiary structure information for representation learning. Nevertheless, the absence of practical methodologies to appropriately model intricate inter-dependencies between protein sequences and structures has resulted in embeddings that exhibit low performance on tasks such as protein function prediction. In this study, we introduce CoupleNet, a novel framework designed to interlink protein sequences and structures to derive informative protein representations. CoupleNet integrates multiple levels and scales of features in proteins, encompassing residue identities and positions for sequences, as well as geometric representations for tertiary structures from both local and global perspectives. A two-type dynamic graph is constructed to capture adjacent and distant sequential features and structural geometries, achieving completeness at the amino acid and backbone levels. Additionally, convolutions are executed on nodes and edges simultaneously to generate comprehensive protein embeddings. Experimental results on benchmark datasets showcase that CoupleNet outperforms state-of-the-art methods, exhibiting particularly superior performance in low-sequence similarities scenarios, adeptly identifying infrequently encountered functions and effectively capturing remote homology relationships in proteins.

Poster
DeNetDM: Debiasing by Network Depth Modulation

Silpa Vadakkeeveetil Sreelatha, Adarsh Kappiyath, Abhra Chaudhuri, Anjan Dutta

展开摘要

Neural networks trained on biased datasets tend to inadvertently learn spurious correlations, hindering generalization. We formally prove that (1) samples that exhibit spurious correlations lie on a lower rank manifold relative to the ones that do not; and (2) the depth of a network acts as an implicit regularizer on the rank of the attribute subspace that is encoded in its representations. Leveraging these insights, we present DeNetDM, a novel debiasing method that uses network depth modulation as a way of developing robustness to spurious correlations. Using a training paradigm derived from Product of Experts, we create both biased and debiased branches with deep and shallow architectures and then distill knowledge to produce the target debiased model. Our method requires no bias annotations or explicit data augmentation while performing on par with approaches that require either or both. We demonstrate that DeNetDM outperforms existing debiasing techniques on both synthetic and real-world datasets by 5\%. The project page is available at https://vssilpa.github.io/denetdm/.

Poster
Non-parametric classification via expand-and-sparsify representation

Kaushik Sinha

展开摘要

In *expand-and-sparsify* (EaS) representation, a data point in $\mathcal{S}^{d-1}$ is first randomly mapped to higher dimension $\mathbb{R}^m$, where $m>d$, followed by a sparsification operation where the informative $k \ll m$ of the $m$ coordinates are set to one and the rest are set to zero. We propose two algorithms for non-parametric classification using such EaS representation. For our first algorithm, we use *winners-take-all* operation for the sparsification step and show that the proposed classifier admits the form of a locally weighted average classifier and establish its consistency via Stone's Theorem. Further, assuming that the conditional probability function $P(y=1|x)=\eta(x)$ is H\"{o}lder continuous and for optimal choice of $m$, we show that the convergence rate of this classifier is minimax-optimal. For our second algorithm, we use *empirical $k$-thresholding* operation for the sparsification step, and under the assumption that data lie on a low dimensional manifold of dimension $d_0\ll d$, we show that the convergence rate of this classifier depends only on $d_0$ and is again minimax-optimal. Empirical evaluations performed on real-world datasets corroborate our theoretical results.

Poster
Sourcerer: Sample-based Maximum Entropy Source Distribution Estimation

Julius Vetter, Guy Moss, Cornelius Schröder, Richard Gao, Jakob H. Macke

展开摘要

Scientific modeling applications often require estimating a distribution of parameters consistent with a dataset of observations - an inference task also known as source distribution estimation. This problem can be ill-posed, however, since many different source distributions might produce the same distribution of data-consistent simulations. To make a principled choice among many equally valid sources, we propose an approach which targets the maximum entropy distribution, i.e., prioritizes retaining as much uncertainty as possible. Our method is purely sample-based - leveraging the Sliced-Wasserstein distance to measure the discrepancy between the dataset and simulations - and thus suitable for simulators with intractable likelihoods. We benchmark our method on several tasks, and show that it can recover source distributions with substantially higher entropy than recent source estimation methods, without sacrificing the fidelity of the simulations. Finally, to demonstrate the utility of our approach, we infer source distributions for parameters of the Hodgkin-Huxley model from experimental datasets with hundreds of single-neuron measurements. In summary, we propose a principled method for inferring source distributions of scientific simulator parameters while retaining as much uncertainty as possible.

Poster
Generalization of Hamiltonian algorithms

Andreas Maurer

展开摘要

A method to prove generalization results for a class of stochastic learning algorithms is presented. It applies whenever the algorithm generates a distribution, which is absolutely continuous distribution relative to some a-priori measure, and the logarithm of its density is exponentially concentrated about its mean. Applications include bounds for the Gibbs algorithm and randomizations of stable deterministic algorithms, combinations thereof and PAC-Bayesian bounds with data-dependent priors.

Poster
Eye-gaze Guided Multi-modal Alignment for Medical Representation Learning

Chong Ma, Hanqi Jiang, Wenting Chen, Yiwei Li, Zihao Wu, Xiaowei Yu, Zhengliang Liu, Lei Guo, Dajiang Zhu, Tuo Zhang, Dinggang Shen, Tianming Liu, Xiang Li

展开摘要

In the medical multi-modal frameworks, the alignment of cross-modality features presents a significant challenge. However, existing works have learned features that are implicitly aligned from the data, without considering the explicit relationships in the medical context. This data-reliance may lead to low generalization of the learned alignment relationships. In this work, we propose the Eye-gaze Guided Multi-modal Alignment (EGMA) framework to harness eye-gaze data for better alignment of medical visual and textual features. We explore the natural auxiliary role of radiologists' eye-gaze data in aligning medical images and text, and introduce a novel approach by using eye-gaze data, collected synchronously by radiologists during diagnostic evaluations. We conduct downstream tasks of image classification and image-text retrieval on four medical datasets, where EGMA achieved state-of-the-art performance and stronger generalization across different datasets. Additionally, we explore the impact of varying amounts of eye-gaze data on model performance, highlighting the feasibility and utility of integrating this auxiliary data into multi-modal alignment framework.

Poster
FlowLLM: Flow Matching for Material Generation with Large Language Models as Base Distributions

Anuroop Sriram, Benjamin Kurt Miller, Ricky T. Q. Chen, Brandon M Wood

展开摘要

Material discovery is a critical area of research with the potential to revolutionize various fields, including carbon capture, renewable energy, and electronics. However, the immense scale of the chemical space makes it challenging to explore all possible materials experimentally. In this paper, we introduce FlowLLM, a novel generative model that combines large language models (LLMs) and Riemannian flow matching (RFM) to design novel crystalline materials. FlowLLM first fine-tunes an LLM to learn an effective base distribution of meta-stable crystals in a text representation. After converting to a graph representation, the RFM model takes samples from the LLM and iteratively refines the coordinates and lattice parameters. Our approach significantly outperforms state-of-the-art methods, increasing the generation rate of stable materials by over three times and increasing the rate for stable, unique, and novel crystals by $\sim50$% – a huge improvement on a difficult problem. Additionally, the crystals generated by FlowLLM are much closer to their relaxed state when compared with another leading model, significantly reducing post-hoc computational cost.

Poster
Fourier Amplitude and Correlation Loss: Beyond Using L2 Loss for Skillful Precipitation Nowcasting

Chiu-Wai Yan, Shi Quan Foo, Van-Hoan Trinh, Dit-Yan Yeung, Ka-Hing Wong, Wai-Kin Wong

展开摘要

Deep learning approaches have been widely adopted for precipitation nowcasting in recent years. Previous studies mainly focus on proposing new model architectures to improve pixel-wise metrics. However, they frequently result in blurry predictions which provide limited utility to forecasting operations. In this work, we propose a new Fourier Amplitude and Correlation Loss (FACL) which consists of two novel loss terms: Fourier Amplitude Loss (FAL) and Fourier Correlation Loss (FCL). FAL regularizes the Fourier amplitude of the model prediction and FCL complements the missing phase information. The two loss terms work together to replace the traditional L2 losses such as MSE and weighted MSE for the spatiotemporal prediction problem on signal-based data. Our method is generic, parameter-free and efficient. Extensive experiments using one synthetic dataset and three radar echo datasets demonstrate that our method improves perceptual metrics and meteorology skill scores, with a small trade-off to pixel-wise accuracy and structural similarity. Moreover, to improve the error margin in meteorological skill scores such as Critical Success Index (CSI) and Fractions Skill Score (FSS), we propose and adopt the Regional Histogram Divergence (RHD), a distance metric that considers the patch-wise similarity between signal-based imagery patterns with tolerance to local transforms.

Poster
Graph Neural Networks and Arithmetic Circuits

Timon Barlag, Vivian Holzapfel, Laura Strieker, Jonni Virtema, Heribert Vollmer

展开摘要

We characterize the computational power of neural networks that follow the graph neural network (GNN) architecture, not restricted to aggregate-combine GNNs or other particular types. We establish an exact correspondence between the expressivity of GNNs using diverse activation functions and arithmetic circuits over real numbers. In our results the activation function of the network becomes a gate type in the circuit. Our result holds for families of constant depth circuits and networks, both uniformly and non-uniformly, for all common activation functions.

Poster