NeurIPS 2024 论文列表

Electroencephalography (EEG) data is often collected from diverse contexts involving different populations and EEG devices. This variability can induce distribution shifts in the data $X$ and in the biomedical variables of interest $y$, thus limiting the application of supervised machine learning (ML) algorithms. While domain adaptation (DA) methods have been developed to mitigate the impact of these shifts, such methods struggle when distribution shifts occur simultaneously in $X$ and $y$. As state-of-the-art ML models for EEG represent the data by spatial covariance matrices, which lie on the Riemannian manifold of Symmetric Positive Definite (SPD) matrices, it is appealing to study DA techniques operating on the SPD manifold. This paper proposes a novel method termed Geodesic Optimization for Predictive Shift Adaptation (GOPSA) to address test-time multi-source DA for situations in which source domains have distinct $y$ distributions. GOPSA exploits the geodesic structure of the Riemannian manifold to jointly learn a domain-specific re-centering operator representing site-specific intercepts and the regression model. We performed empirical benchmarks on the cross-site generalization of age-prediction models with resting-state EEG data from a large multi-national dataset (HarMNqEEG), which included $14$ recording sites and more than $1500$ human participants. Compared to state-of-the-art methods, our results showed that GOPSA achieved significantly higher performance on three regression metrics ($R^2$, MAE, and Spearman's $\rho$) for several source-target site combinations, highlighting its effectiveness in tackling multi-source DA with predictive shifts in EEG data analysis. Our method has the potential to combine the advantages of mixed-effects modeling with machine learning for biomedical applications of EEG, such as multicenter clinical trials.

We present the first algorithm for testing equivalence between two continuous distributions using differential privacy (DP). Our algorithm is a private version of the algorithm of Diakonikolas et al. The algorithm of Diakonikolas et al uses the data itself to repeatedly discretize the real line so that --- when the two distributions are far apart in ${\cal A}_k$-norm --- one of the discretized distributions exhibits large $L_2$-norm difference; and upon repeated sampling such large gap would be detected. Designing its private analogue poses two difficulties. First, our DP algorithm can not resample new datapoints as a change to a single datapoint may lead to a very large change in the descretization of the real line. In contrast, the (sorted) index of the discretization point changes only by $1$ between neighboring instances, and so we use a novel algorithm that set the discretization points using random Bernoulli noise, resulting in only a few buckets being affected under the right coupling. Second, our algorithm, which doesn't resample data, requires we also revisit the utility analysis of the original algorithm and prove its correctness w.r.t. the original sorted data; a problem we tackle using sampling a subset of Poisson-drawn size from each discretized bin. Lastly, since any distribution can be reduced to a continuous distribution, our algorithm is successfully carried to multiple other families of distributions and thus has numerous applications.

Clouds in satellite imagery pose a significant challenge for downstream applications. A major challenge in current cloud removal research is the absence of a comprehensive benchmark and a sufficiently large and diverse training dataset. To address this problem, we introduce the largest public dataset -- *AllClear* for cloud removal, featuring 23,742 globally distributed regions of interest (ROIs) with diverse land-use patterns, comprising 4 million images in total. Each ROI includes complete temporal captures from the year 2022, with (1) multi-spectral optical imagery from Sentinel-2 and Landsat 8/9, (2) synthetic aperture radar (SAR) imagery from Sentinel-1, and (3) auxiliary remote sensing products such as cloud masks and land cover maps. We validate the effectiveness of our dataset by benchmarking performance, demonstrating the scaling law - the PSNR rises from $28.47$ to $33.87$ with $30\times$ more data, and conducting ablation studies on the temporal length and the importance of individual modalities. This dataset aims to provide comprehensive coverage of the Earth's surface and promote better cloud removal results.

Long-tailed data distributions pose challenges for a variety of domains like e-commerce, finance, biomedical science, and cyber security, where the performance of machine learning models is often dominated by head categories while tail categories are inadequately learned. This work aims to provide a systematic view of long-tailed learning with regard to three pivotal angles: (A1) the characterization of data long-tailedness, (A2) the data complexity of various domains, and (A3) the heterogeneity of emerging tasks. We develop HeroLT, a comprehensive long-tailed learning benchmark integrating 18 state-of-the-art algorithms, 10 evaluation metrics, and 17 real-world datasets across 6 tasks and 4 data modalities. HeroLT with novel angles and extensive experiments (315 in total) enables effective and fair evaluation of newly proposed methods compared with existing baselines on varying dataset types. Finally, we conclude by highlighting the significant applications of long-tailed learning and identifying several promising future directions. For accessibility and reproducibility, we open-source our benchmark HeroLT and corresponding results at https://github.com/SSSKJ/HeroLT.

Cultural accumulation drives the open-ended and diverse progress in capabilities spanning human history. It builds an expanding body of knowledge and skills by combining individual exploration with inter-generational information transmission. Despite its widespread success among humans, the capacity for artificial learning agents to accumulate culture remains under-explored. In particular, approaches to reinforcement learning typically strive for improvements over only a single lifetime. Generational algorithms that do exist fail to capture the open-ended, emergent nature of cultural accumulation, which allows individuals to trade-off innovation and imitation. Building on the previously demonstrated ability for reinforcement learning agents to perform social learning, we find that training setups which balance this with independent learning give rise to cultural accumulation. These accumulating agents outperform those trained for a single lifetime with the same cumulative experience. We explore this accumulation by constructing two models under two distinct notions of a generation: episodic generations, in which accumulation occurs via in-context learning and train-time generations, in which accumulation occurs via in-weights learning. In-context and in-weights cultural accumulation can be interpreted as analogous to knowledge and skill accumulation, respectively. To the best of our knowledge, this work is the first to present general models that achieve emergent cultural accumulation in reinforcement learning, opening up new avenues towards more open-ended learning systems, as well as presenting new opportunities for modelling human culture.

Efficient coding theory posits that sensory circuits transform natural signals into neural representations that maximize information transmission subject to resource constraints. Local interneurons are thought to play an important role in these transformations, shaping patterns of circuit activity to facilitate and direct information flow. However, the relationship between these coordinated, nonlinear, circuit-level transformations and the properties of interneurons (e.g., connectivity, activation functions) remains unknown. Here, we propose a normative computational model that establishes such a relationship. Our model is derived from an optimal transport objective that conceptualizes the circuit's input-response function as transforming the inputs to achieve a target response distribution. The circuit, which is comprised of primary neurons that are recurrently connected to a set of local interneurons, continuously optimizes this objective by dynamically adjusting both the synaptic connections between neurons as well as the interneuron activation functions. In an application motivated by redundancy reduction theory, we demonstrate that when the inputs are natural image statistics and the target distribution is a spherical Gaussian, the circuit learns a nonlinear transformation that significantly reduces statistical dependencies in neural responses. Overall, our results provide a framework in which the distribution of circuit responses is systematically and nonlinearly controlled by adjustment of interneuron connectivity and activation functions.

Decoding non-invasive brain recordings is pivotal for advancing our understanding of human cognition but faces challenges due to individual differences and complex neural signal representations. Traditional methods often require customized models and extensive trials, lacking interpretability in visual reconstruction tasks. Our framework integrates 3D brain structures with visual semantics using a *Vision Transformer 3D*. This unified feature extractor efficiently aligns fMRI features with multiple levels of visual embeddings, eliminating the need for subject-specific models and allowing extraction from single-trial data. The extractor consolidates multi-level visual features into one network, simplifying integration with Large Language Models (LLMs). Additionally, we have enhanced the fMRI dataset with diverse fMRI-image-related textual data to support multimodal large model development. Integrating with LLMs enhances decoding capabilities, enabling tasks such as brain captioning, complex reasoning, concept localization, and visual reconstruction. Our approach demonstrates superior performance across these tasks, precisely identifying language-based concepts within brain signals, enhancing interpretability, and providing deeper insights into neural processes. These advances significantly broaden the applicability of non-invasive brain decoding in neuroscience and human-computer interaction, setting the stage for advanced brain-computer interfaces and cognitive models.

Localized receptive fields—neurons that are selective for certain contiguous spatiotemporal features of their input—populate early sensory regions of the mammalian brain. Unsupervised learning algorithms that optimize explicit sparsity or independence criteria replicate features of these localized receptive fields, but fail to explain directly how localization arises through learning without efficient coding, as occurs in early layers of deep neural networks and might occur in early sensory regions of biological systems. We consider an alternative model in which localized receptive fields emerge without explicit top-down efficiency constraints—a feed-forward neural network trained on a data model inspired by the structure of natural images. Previous work identified the importance of non-Gaussian statistics to localization in this setting but left open questions about the mechanisms driving dynamical emergence. We address these questions by deriving the effective learning dynamics for a single nonlinear neuron, making precise how higher-order statistical properties of the input data drive emergent localization, and we demonstrate that the predictions of these effective dynamics extend to the many-neuron setting. Our analysis provides an alternative explanation for the ubiquity of localization as resulting from the nonlinear dynamics of learning in neural circuits

Intrinsic dynamics within the brain can accelerate learning by providing a prior scaffolding for dynamics aligned with task objectives. Such intrinsic dynamics would ideally self-organize and self-sustain in the face of biological noise including synaptic turnover and cell death. An example of such dynamics is the formation of sequences, a ubiquitous motif in neural activity. The sequence-generating circuit in zebra finch HVC provides a reliable timing scaffold for motor output in song and demonstrates a remarkable capacity for unsupervised recovery following perturbation. Inspired by HVC, we seek a local plasticity rule capable of organizing and maintaining sequence-generating dynamics despite continual network perturbations. We adopt a meta-learning approach introduced by Confavreux et al, which parameterizes a learning rule using basis functions constructed from pre- and postsynaptic activity and synapse size, with tunable time constants. Candidate rules are simulated within initially random networks, and their fitness is evaluated according to a loss function that measures the fidelity with which the resulting dynamics encode time. We use this approach to introduce biological noise, forcing meta-learning to find robust solutions. We first show that, in the absence of perturbations, meta-learning identifies a temporally asymmetric generalization of Oja's rule that reliably organizes sparse sequential activity. When synaptic turnover is introduced, the learned rule incorporates a form of homeostasis, better maintaining robust sequential dynamics relative to other previously proposed rules. Additionally, inspired by recent findings demonstrating that the strength of projections from inhibitory interneurons in HVC also dynamically responds to perturbations, we explore the role of inhibitory plasticity in sequence-generating circuits. We find that learned plasticity adjusts both excitation and inhibition in response to manipulations, outperforming rules applied only to excitatory connections. We demonstrate how plasticity acting on both excitatory and inhibitory synapses can better shape excitatory cell dynamics to scaffold timing representations.

Tensor multiplication with learned weight matrices is the fundamental building block in deep learning models. These matrices can often be sparsified, decomposed, quantized, or subjected to random parameter sharing without losing accuracy, suggesting the possibility of more efficient transforms. Although many variants of weight matrices exist, unstructured ones are incompatible with modern hardware, slowing inference and training. On the other hand, structured variants often limit expressivity or fail to deliver the promised latency benefits. We present Sketch Structured Transform (SS1), an expressive and GPU-friendly operator that accelerates inference. SS1 leverages parameter sharing in a random yet structured manner to reduce computation while retraining the rich expressive nature of parameter sharing. We confirm empirically that SS1 offers better quality-efficiency tradeoffs than competing variants. Interestingly SS1 can be combined with Quantization to achieve gains unattainable by either method alone, a finding we justify via theoretical analysis. The analysis may be of independent interest. Moreover, existing pre-trained models can be projected onto SS1 and finetuned for efficient deployment. Surprisingly, these projected models can perform reasonably well even without finetuning. Our experiments highlight various applications of the SS1: (a) Training GPT2 and DLRM models from scratch for faster inference. (b) Finetuning projected BERT models for 1.31× faster inference while maintaining GLUE scores. (c) Proof of concept with Llama-3-8b, showing 1.11× faster wall clock inference using projected SS1 layers without finetuning. We open source our code :https://github.com/apd10/Sketch-Structured-Linear/

Current neural network models of primate vision focus on replicating overall levels of behavioral accuracy, often neglecting perceptual decisions' rich, dynamic nature. Here, we introduce a novel computational framework to model the dynamics of human behavioral choices by learning to align the temporal dynamics of a recurrent neural network (RNN) to human reaction times (RTs). We describe an approximation that allows us to constrain the number of time steps an RNN takes to solve a task with human RTs. The approach is extensively evaluated against various psychophysics experiments. We also show that the approximation can be used to optimize an ``ideal-observer'' RNN model to achieve an optimal tradeoff between speed and accuracy without human data. The resulting model is found to account well for human RT data. Finally, we use the approximation to train a deep learning implementation of the popular Wong-Wang decision-making model. The model is integrated with a convolutional neural network (CNN) model of visual processing and evaluated using both artificial and natural image stimuli. Overall, we present a novel framework that helps align current vision models with human behavior, bringing us closer to an integrated model of human vision.

Neuroscience research has made immense progress over the last decade, but our understanding of the brain remains fragmented and piecemeal: the dream of probing an arbitrary brain region and automatically reading out the information encoded in its neural activity remains out of reach. In this work, we build towards a first foundation model for neural spiking data that can solve a diverse set of tasks across multiple brain areas. We introduce a novel self-supervised modeling approach for population activity in which the model alternates between masking out and reconstructing neural activity across different time steps, neurons, and brain regions. To evaluate our approach, we design unsupervised and supervised prediction tasks using the International Brain Laboratory repeated site dataset, which is comprised of Neuropixels recordings targeting the same brain locations across 48 animals and experimental sessions. The prediction tasks include single-neuron and region-level activity prediction, forward prediction, and behavior decoding. We demonstrate that our multi-task-masking (MtM) approach significantly improves the performance of current state-of-the-art population models and enables multi-task learning. We also show that by training on multiple animals, we can improve the generalization ability of the model to unseen animals, paving the way for a foundation model of the brain at single-cell, single-spike resolution.

Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of experimenter-specified groups of individual neurons, while simultaneous two-photon calcium imaging enables the measurement of ongoing and induced activity across the neural population. Despite the enormous space of potential photostimulation patterns and the time-consuming nature of photostimulation experiments, very little algorithmic work has been done to determine the most effective photostimulation patterns for identifying the neural population dynamics. Here, we develop methods to efficiently select which neurons to stimulate such that the resulting neural responses will best inform a dynamical model of the neural population activity. Using neural population responses to photostimulation in mouse motor cortex, we demonstrate the efficacy of a low-rank linear dynamical systems model, and develop an active learning procedure which takes advantage of low-rank structure to determine informative photostimulation patterns. We demonstrate our approach on both real and synthetic data, obtaining in some cases as much as a two-fold reduction in the amount of data required to reach a given predictive power. Our active stimulation design method is based on a novel active learning procedure for low-rank regression, which may be of independent interest.

Manifold clustering is an important problem in motion and video segmentation, natural image clustering, and other applications where high-dimensional data lie on multiple, low-dimensional, nonlinear manifolds. While current state-of-the-art methods on large-scale datasets such as CIFAR provide good empirical performance, they do not have any proof of theoretical correctness. In this work, we propose a method that clusters data belonging to a union of nonlinear manifolds. Furthermore, for a given input data sample $y$ belonging to the $l$th manifold $\mathcal{M}_l$, we provide geometric conditions that guarantee a manifold-preserving representation of $y$ can be recovered from the solution to the proposed model. The geometric conditions require that (i) $\mathcal{M}_l$ is well-sampled in the neighborhood of $y$, with the sampling density given as a function of the curvature, and (ii) $\mathcal{M}_l$ is sufficiently separated from the other manifolds. In addition to providing proof of correctness in this setting, a numerical comparison with state-of-the-art methods on CIFAR datasets shows that our method performs competitively although marginally worse than methods without

Large language models (LLMs) have rapidly improved text embeddings for a growing array of natural-language processing tasks. However, their opaqueness and proliferation into scientific domains such as neuroscience have created a growing need for interpretability. Here, we ask whether we can obtain interpretable embeddings through LLM prompting. We introduce question-answering embeddings (QA-Emb), embeddings where each feature represents an answer to a yes/no question asked to an LLM. Training QA-Emb reduces to selecting a set of underlying questions rather than learning model weights. We use QA-Emb to flexibly generate interpretable models for predicting fMRI voxel responses to language stimuli. QA-Emb significantly outperforms an established interpretable baseline, and does so while requiring very few questions. This paves the way towards building flexible feature spaces that can concretize and evaluate our understanding of semantic brain representations. We additionally find that QA-Emb can be effectively approximated with an efficient model, and we explore broader applications in simple NLP tasks.

A pivotal brain computation relies on the ability to sustain perception-action loops. Stochastic optimal control theory offers a mathematical framework to explain these processes at the algorithmic level through optimality principles. However, incorporating a realistic noise model of the sensorimotor system — accounting for multiplicative noise in feedback and motor output, as well as internal noise in estimation — makes the problem challenging. Currently, the algorithm that is commonly used is the one proposed in the seminal study in (Todorov, 2005). After discovering some pitfalls in the original derivation, i.e., unbiased estimation does not hold, we improve the algorithm by proposing an efficient gradient descent-based optimization that minimizes the cost-to-go while only imposing linearity of the control law. The optimal solution is obtained by iteratively propagating in closed form the sufficient statistics to compute the expected cost and then minimizing this cost with respect to the filter and control gains. We demonstrate that this approach results in a significantly lower overall cost than current state-of-the-art solutions, particularly in the presence of internal noise, though the improvement is present in other circumstances as well, with theoretical explanations for this enhanced performance. Providing the optimal control law is key for inverse control inference, especially in explaining behavioral data under rationality assumptions.

We introduce a mathematically rigorous framework based on rough path theory to model stochastic spiking neural networks (SSNNs) as stochastic differential equations with event discontinuities (Event SDEs) and driven by càdlàg rough paths. Our formalism is general enough to allow for potential jumps to be present both in the solution trajectories as well as in the driving noise. We then identify a set of sufficient conditions ensuring the existence of pathwise gradients of solution trajectories and event times with respect to the network's parameters and show how these gradients satisfy a recursive relation. Furthermore, we introduce a general-purpose loss function defined by means of a new class of signature kernels indexed on càdlàg rough paths and use it to train SSNNs as generative models. We provide an end-to-end autodifferentiable solver for Event SDEs and make its implementation available as part of the $\texttt{diffrax}$ library. Our framework is, to our knowledge, the first enabling gradient-based training of SSNNs with noise affecting both the spike timing and the network's dynamics.

Sequential memory, the ability to form and accurately recall a sequence of events or stimuli in the correct order, is a fundamental prerequisite for biological and artificial intelligence as it underpins numerous cognitive functions (e.g., language comprehension, planning, episodic memory formation, etc.) However, existing methods of sequential memory suffer from catastrophic forgetting, limited capacity, slow iterative learning procedures, low-order Markov memory, and, most importantly, the inability to represent and generate multiple valid future possibilities stemming from the same context. Inspired by biologically plausible neuroscience theories of cognition, we propose Predictive Attractor Models (PAM), a novel sequence memory architecture with desirable generative properties. PAM is a streaming model that learns a sequence in an online, continuous manner by observing each input only once. Additionally, we find that PAM avoids catastrophic forgetting by uniquely representing past context through lateral inhibition in cortical minicolumns, which prevents new memories from overwriting previously learned knowledge. PAM generates future predictions by sampling from a union set of predicted possibilities; this generative ability is realized through an attractor model trained alongside the predictor. We show that PAM is trained with local computations through Hebbian plasticity rules in a biologically plausible framework. Other desirable traits (e.g., noise tolerance, CPU-based learning, capacity scaling) are discussed throughout the paper. Our findings suggest that PAM represents a significant step forward in the pursuit of biologically plausible and computationally efficient sequential memory models, with broad implications for cognitive science and artificial intelligence research. Illustration videos and code are available on our project page: https://ramymounir.com/publications/pam.

Electroencephalography (EEG) is crucial for recording brain activity, with applications in medicine, neuroscience, and brain-computer interfaces (BCI). However, challenges such as low signal-to-noise ratio (SNR), high inter-subject variability, and channel mismatch complicate the extraction of robust, universal EEG representations. We propose EEGPT, a novel 10-million-parameter pretrained transformer model designed for universal EEG feature extraction. In EEGPT, a mask-based dual self-supervised learning method for efficient feature extraction is designed. Compared to other mask-based self-supervised learning methods, EEGPT introduces spatio-temporal representation alignment. This involves constructing a self-supervised task based on EEG representations that possess high SNR and rich semantic information, rather than on raw signals. Consequently, this approach mitigates the issue of poor feature quality typically extracted from low SNR signals. Additionally, EEGPT's hierarchical structure processes spatial and temporal information separately, reducing computational complexity while increasing flexibility and adaptability for BCI applications. By training on a large mixed multi-task EEG dataset, we fully exploit EEGPT's capabilities. The experiment validates the efficacy and scalability of EEGPT, achieving state-of-the-art performance on a range of downstream tasks with linear-probing. Our research advances EEG representation learning, offering innovative solutions for bio-signal processing and AI applications. The code for this paper is available at: https://github.com/BINE022/EEGPT