NeurIPS 2021 论文列表

Conference on Neural Information Processing Systems

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2,508篇论文

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    26010.4%
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    2,19387.4%

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Multi-Scale Representation Learning on Proteins

Vignesh Ram Somnath, Charlotte Bunne, Andreas Krause

展开摘要

Proteins are fundamental biological entities mediating key roles in cellular function and disease. This paper introduces a multi-scale graph construction of a protein –HoloProt– connecting surface to structure and sequence. The surface captures coarser details of the protein, while sequence as primary component and structure –comprising secondary and tertiary components– capture finer details. Our graph encoder then learns a multi-scale representation by allowing each level to integrate the encoding from level(s) below with the graph at that level. We test the learned representation on different tasks, (i.) ligand binding affinity (regression), and (ii.) protein function prediction (classification). On the regression task, contrary to previous methods, our model performs consistently and reliably across different dataset splits, outperforming all baselines on most splits. On the classification task, it achieves a performance close to the top-performing model while using 10x fewer parameters. To improve the memory efficiency of our construction, we segment the multiplex protein surface manifold into molecular superpixels and substitute the surface with these superpixels at little to no performance loss.

Poster
The PAIR-R24M Dataset for Multi-animal 3D Pose Estimation

Jesse D Marshall, Ugne Klibaite, amanda gellis, Diego E Aldarondo, Bence Olveczky, Timothy W DUNN

展开摘要

Understanding the biological basis of social and collective behaviors in animals is a key goal of the life sciences, and may yield important insights for engineering intelligent multi-agent systems. A critical step in interrogating the mechanisms underlying social behaviors is a precise readout of the 3D pose of interacting animals. While approaches for multi-animal pose estimation are beginning to emerge, they remain challenging to compare due to the lack of standardized training and benchmark datasets. Here we introduce the PAIR-R24M (Paired Acquisition of Interacting oRganisms - Rat) dataset for multi-animal 3D pose estimation, which contains 24.3 million frames of RGB video and 3D ground-truth motion capture of dyadic interactions in laboratory rats. PAIR-R24M contains data from 18 distinct pairs of rats and 24 different viewpoints. We annotated the data with 11 behavioral labels and 3 interaction categories to facilitate benchmarking in rare but challenging behaviors. To establish a baseline for markerless multi-animal 3D pose estimation, we developed a multi-animal extension of DANNCE, a recently published network for 3D pose estimation in freely behaving laboratory animals. As the first large multi-animal 3D pose estimation dataset, PAIR-R24M will help advance 3D animal tracking approaches and aid in elucidating the neural basis of social behaviors.

Poster
Habitat-Matterport 3D Dataset (HM3D): 1000 Large-scale 3D Environments for Embodied AI

Santhosh Kumar Ramakrishnan, Aaron Gokaslan, Erik Wijmans, Oleksandr Maksymets, Alexander Clegg, John M Turner, Eric Undersander, Wojciech Galuba, Andrew Westbury, Angel X Chang, Manolis Savva, Yili Zhao, Dhruv Batra

展开摘要

We present the Habitat-Matterport 3D (HM3D) dataset. HM3D is a large-scale dataset of 1,000 building-scale 3D reconstructions from a diverse set of real-world locations. Each scene in the dataset consists of a textured 3D mesh reconstruction of interiors such as multi-floor residences, stores, and other private indoor spaces. HM3D surpasses existing datasets available for academic research in terms of physical scale, completeness of the reconstruction, and visual fidelity. HM3D contains 112.5k m^2 of navigable space, which is 1.4 - 3.7× larger than other building-scale datasets (MP3D, Gibson). When compared to existing photorealistic 3D datasets (Replica, MP3D, Gibson, ScanNet), rendered images from HM3D have 20 - 85% higher visual fidelity w.r.t. counterpart images captured with real cameras, and HM3D meshes have 34 - 91% fewer artifacts due to incomplete surface reconstruction. The increased scale, fidelity, and diversity of HM3D directly impacts the performance of embodied AI agents trained using it. In fact, we find that HM3D is ‘pareto optimal’ in the following sense – agents trained to perform PointGoal navigation on HM3D achieve the highest performance regardless of whether they are evaluated on HM3D, Gibson, or MP3D. No similar claim can be made about training on other datasets. HM3D-trained PointNav agents achieve 100% performance on Gibson-test dataset, suggesting that it might be time to retire that episode dataset. The HM3D dataset, analysis code, and pre-trained models are publicly released: https://aihabitat.org/datasets/hm3d/.

Poster
Soft Calibration Objectives for Neural Networks

Archit Karandikar, Nicholas Cain, Dustin Tran, Balaji Lakshminarayanan, Jonathon Shlens, Michael Curtis Mozer, Rebecca Roelofs

展开摘要

Optimal decision making requires that classifiers produce uncertainty estimates consistent with their empirical accuracy. However, deep neural networks are often under- or over-confident in their predictions. Consequently, methods have been developed to improve the calibration of their predictive uncertainty both during training and post-hoc. In this work, we propose differentiable losses to improve calibration based on a soft (continuous) version of the binning operation underlying popular calibration-error estimators. When incorporated into training, these soft calibration losses achieve state-of-the-art single-model ECE across multiple datasets with less than 1% decrease in accuracy. For instance, we observe an 82% reduction in ECE (70% relative to the post-hoc rescaled ECE) in exchange for a 0.7% relative decrease in accuracy relative to the cross entropy baseline on CIFAR-100. When incorporated post-training, the soft-binning-based calibration error objective improves upon temperature scaling, a popular recalibration method. Overall, experiments across losses and datasets demonstrate that using calibration-sensitive procedures yield better uncertainty estimates under dataset shift than the standard practice of using a cross entropy loss and post-hoc recalibration methods.

Poster
Dynamic Bottleneck for Robust Self-Supervised Exploration

Chenjia Bai, Lingxiao Wang, Lei Han, Animesh Garg, Jianye Hao, Peng Liu, Zhaoran Wang

展开摘要

Exploration methods based on pseudo-count of transitions or curiosity of dynamics have achieved promising results in solving reinforcement learning with sparse rewards. However, such methods are usually sensitive to environmental dynamics-irrelevant information, e.g., white-noise. To handle such dynamics-irrelevant information, we propose a Dynamic Bottleneck (DB) model, which attains a dynamics-relevant representation based on the information-bottleneck principle. Based on the DB model, we further propose DB-bonus, which encourages the agent to explore state-action pairs with high information gain. We establish theoretical connections between the proposed DB-bonus, the upper confidence bound (UCB) for linear case, and the visiting count for tabular case. We evaluate the proposed method on Atari suits with dynamics-irrelevant noises. Our experiments show that exploration with DB bonus outperforms several state-of-the-art exploration methods in noisy environments.

Poster
A Gradient Method for Multilevel Optimization

Ryo Sato, Mirai Tanaka, Akiko Takeda

展开摘要

Although application examples of multilevel optimization have already been discussed since the 1990s, the development of solution methods was almost limited to bilevel cases due to the difficulty of the problem. In recent years, in machine learning, Franceschi et al. have proposed a method for solving bilevel optimization problems by replacing their lower-level problems with the $T$ steepest descent update equations with some prechosen iteration number $T$. In this paper, we have developed a gradient-based algorithm for multilevel optimization with $n$ levels based on their idea and proved that our reformulation asymptotically converges to the original multilevel problem. As far as we know, this is one of the first algorithms with some theoretical guarantee for multilevel optimization. Numerical experiments show that a trilevel hyperparameter learning model considering data poisoning produces more stable prediction results than an existing bilevel hyperparameter learning model in noisy data settings.

Poster
Benchmarking Data-driven Surrogate Simulators for Artificial Electromagnetic Materials

Yang Deng, Juncheng Dong, Simiao Ren, Omar Khatib, Mohammadreza Soltani, Vahid Tarokh, Willie Padilla, Jordan Malof

展开摘要

Artificial electromagnetic materials (AEMs), including metamaterials, derive their electromagnetic properties from geometry rather than chemistry. With the appropriate geometric design, AEMs have achieved exotic properties not realizable with conventional materials (e.g., cloaking or negative refractive index). However, understanding the relationship between the AEM structure and its properties is often poorly understood. While computational electromagnetic simulation (CEMS) may help design new AEMs, its use is limited due to its long computational time. Recently, it has been shown that deep learning can be an alternative solution to infer the relationship between an AEM geometry and its properties using a (relatively) small pool of CEMS data. However, the limited publicly released datasets and models and no widely-used benchmark for comparison have made using deep learning approaches even more difficult. Furthermore, configuring CEMS for a specific problem requires substantial expertise and time, making reproducibility challenging. Here, we develop a collection of three classes of AEM problems: metamaterials, nanophotonics, and color filter designs. We also publicly release software, allowing other researchers to conduct additional simulations for each system easily. Finally, we conduct experiments on our benchmark datasets with three recent neural network architectures: the multilayer perceptron (MLP), MLP-mixer, and transformer. We identify the methods and models that generalize best over the three problems to establish the best practice and baseline results upon which future research can build.

Poster
Locally Most Powerful Bayesian Test for Out-of-Distribution Detection using Deep Generative Models

Keunseo Kim, JunCheol Shin, Heeyoung Kim

展开摘要

Several out-of-distribution (OOD) detection scores have been recently proposed for deep generative models because the direct use of the likelihood threshold for OOD detection has been shown to be problematic. In this paper, we propose a new OOD score based on a Bayesian hypothesis test called the locally most powerful Bayesian test (LMPBT). The LMPBT is locally most powerful in that the alternative hypothesis (the representative parameter for the OOD sample) is specified to maximize the probability that the Bayes factor exceeds the evidence threshold in favor of the alternative hypothesis provided that the parameter specified under the alternative hypothesis is in the neighborhood of the parameter specified under the null hypothesis. That is, under this neighborhood parameter condition, the test with the proposed alternative hypothesis maximizes the probability of correct detection of OOD samples. We also propose numerical strategies for more efficient and reliable computation of the LMPBT for practical application to deep generative models. Evaluations conducted of the OOD detection performance of the LMPBT on various benchmark datasets demonstrate its superior performance over existing OOD detection methods.

Poster
Learning Causal Semantic Representation for Out-of-Distribution Prediction

Chang Liu, Xinwei Sun, Jindong Wang, Haoyue Tang, Tao Li, Tao Qin, Wei Chen, Tie-Yan Liu

展开摘要

Conventional supervised learning methods, especially deep ones, are found to be sensitive to out-of-distribution (OOD) examples, largely because the learned representation mixes the semantic factor with the variation factor due to their domain-specific correlation, while only the semantic factor causes the output. To address the problem, we propose a Causal Semantic Generative model (CSG) based on a causal reasoning so that the two factors are modeled separately, and develop methods for OOD prediction from a single training domain, which is common and challenging. The methods are based on the causal invariance principle, with a novel design in variational Bayes for both efficient learning and easy prediction. Theoretically, we prove that under certain conditions, CSG can identify the semantic factor by fitting training data, and this semantic-identification guarantees the boundedness of OOD generalization error and the success of adaptation. Empirical study shows improved OOD performance over prevailing baselines.

Poster
Row-clustering of a Point Process-valued Matrix

Lihao Yin, Ganggang Xu, Huiyan Sang, Yongtao Guan

展开摘要

Structured point process data harvested from various platforms poses new challenges to the machine learning community. To cluster repeatedly observed marked point processes, we propose a novel mixture model of multi-level marked point processes for identifying potential heterogeneity in the observed data. Specifically, we study a matrix whose entries are marked log-Gaussian Cox processes and cluster rows of such a matrix. An efficient semi-parametric Expectation-Solution (ES) algorithm combined with functional principal component analysis (FPCA) of point processes is proposed for model estimation. The effectiveness of the proposed framework is demonstrated through simulation studies and real data analyses.

Poster
Cycle Self-Training for Domain Adaptation

Hong Liu, Jianmin Wang, Mingsheng Long

展开摘要

Mainstream approaches for unsupervised domain adaptation (UDA) learn domain-invariant representations to narrow the domain shift, which are empirically effective but theoretically challenged by the hardness or impossibility theorems. Recently, self-training has been gaining momentum in UDA, which exploits unlabeled target data by training with target pseudo-labels. However, as corroborated in this work, under distributional shift, the pseudo-labels can be unreliable in terms of their large discrepancy from target ground truth. In this paper, we propose Cycle Self-Training (CST), a principled self-training algorithm that explicitly enforces pseudo-labels to generalize across domains. CST cycles between a forward step and a reverse step until convergence. In the forward step, CST generates target pseudo-labels with a source-trained classifier. In the reverse step, CST trains a target classifier using target pseudo-labels, and then updates the shared representations to make the target classifier perform well on the source data. We introduce the Tsallis entropy as a confidence-friendly regularization to improve the quality of target pseudo-labels. We analyze CST theoretically under realistic assumptions, and provide hard cases where CST recovers target ground truth, while both invariant feature learning and vanilla self-training fail. Empirical results indicate that CST significantly improves over the state-of-the-arts on visual recognition and sentiment analysis benchmarks.

Poster
Support Recovery of Sparse Signals from a Mixture of Linear Measurements

Soumyabrata Pal, Arya Mazumdar, Venkata Gandikota

展开摘要

Recovery of support of a sparse vector from simple measurements is a widely studied problem, considered under the frameworks of compressed sensing, 1-bit compressed sensing, and more general single index models. We consider generalizations of this problem: mixtures of linear regressions, and mixtures of linear classifiers, where the goal is to recover supports of multiple sparse vectors using only a small number of possibly noisy linear, and 1-bit measurements respectively. The key challenge is that the measurements from different vectors are randomly mixed. Both of these problems have also received attention recently. In mixtures of linear classifiers, an observation corresponds to the side of the queried hyperplane a random unknown vector lies in; whereas in mixtures of linear regressions we observe the projection of a random unknown vector on the queried hyperplane. The primary step in recovering the unknown vectors from the mixture is to first identify the support of all the individual component vectors. In this work, we study the number of measurements sufficient for recovering the supports of all the component vectors in a mixture in both these models. We provide algorithms that use a number of measurements polynomial in $k, \log n$ and quasi-polynomial in $\ell$, to recover the support of all the $\ell$ unknown vectors in the mixture with high probability when each individual component is a $k$-sparse $n$-dimensional vector.

Poster
The future is log-Gaussian: ResNets and their infinite-depth-and-width limit at initialization

Mufan Li, Mihai Nica, Daniel M. Roy

展开摘要

Theoretical results show that neural networks can be approximated by Gaussian processes in the infinite-width limit. However, for fully connected networks, it has been previously shown that for any fixed network width, $n$, the Gaussian approximation gets worse as the network depth, $d$, increases. Given that modern networks are deep, this raises the question of how well modern architectures, like ResNets, are captured by the infinite-width limit. To provide a better approximation, we study ReLU ResNets in the infinite-depth-and-width limit, where \emph{both} depth and width tend to infinity as their ratio, $d/n$, remains constant. In contrast to the Gaussian infinite-width limit, we show theoretically that the network exhibits log-Gaussian behaviour at initialization in the infinite-depth-and-width limit, with parameters depending on the ratio $d/n$. Using Monte Carlo simulations, we demonstrate that even basic properties of standard ResNet architectures are poorly captured by the Gaussian limit, but remarkably well captured by our log-Gaussian limit. Moreover, our analysis reveals that ReLU ResNets at initialization are hypoactivated: fewer than half of the ReLUs are activated. Additionally, we calculate the interlayer correlations, which have the effect of exponentially increasing the variance of the network output. Based on our analysis, we introduce \emph{Balanced ResNets}, a simple architecture modification, which eliminates hypoactivation and interlayer correlations and is more amenable to theoretical analysis.

Poster
Out-of-Distribution Generalization in Kernel Regression

Abdulkadir Canatar, Blake Bordelon, Cengiz Pehlevan

展开摘要

In real word applications, data generating process for training a machine learning model often differs from what the model encounters in the test stage. Understanding how and whether machine learning models generalize under such distributional shifts have been a theoretical challenge. Here, we study generalization in kernel regression when the training and test distributions are different using methods from statistical physics. Using the replica method, we derive an analytical formula for the out-of-distribution generalization error applicable to any kernel and real datasets. We identify an overlap matrix that quantifies the mismatch between distributions for a given kernel as a key determinant of generalization performance under distribution shift. Using our analytical expressions we elucidate various generalization phenomena including possible improvement in generalization when there is a mismatch. We develop procedures for optimizing training and test distributions for a given data budget to find best and worst case generalizations under the shift. We present applications of our theory to real and synthetic datasets and for many kernels. We compare results of our theory applied to Neural Tangent Kernel with simulations of wide networks and show agreement. We analyze linear regression in further depth.

Poster
Sparse is Enough in Scaling Transformers

Sebastian Jaszczur, Aakanksha Chowdhery, Afroz Mohiuddin, Lukasz Kaiser, Wojciech Gajewski, Henryk Michalewski, Jonni Kanerva

展开摘要

Large Transformer models yield impressive results on many tasks, but are expensive to train, or even fine-tune, and so slow at decoding that their use and study becomes out of reach. We address this problem by leveraging sparsity. We study sparse variants for all layers in the Transformer and propose Scaling Transformers, a family of next generation Transformer models that use sparse layers to scale efficiently and perform unbatched decoding much faster than the standard Transformer as we scale up the model size. Surprisingly, the sparse layers are enough to obtain the same perplexity as the standard Transformer with the same number of parameters. We also integrate with prior sparsity approaches to attention and enable fast inference on long sequences even with limited memory. This results in performance competitive to the state-of-the-art on long text summarization.

Poster
Active Learning of Convex Halfspaces on Graphs

Maximilian Thiessen, Thomas Gärtner

展开摘要

We systematically study the query complexity of learning geodesically convex halfspaces on graphs. Geodesic convexity is a natural generalisation of Euclidean convexity and allows the definition of convex sets and halfspaces on graphs. We prove an upper bound on the query complexity linear in the treewidth and the minimum hull set size but only logarithmic in the diameter. We show tight lower bounds along well-established separation axioms and identify the Radon number as a central parameter of the query complexity and the VC dimension. While previous bounds typically depend on the cut size of the labelling, all parameters in our bounds can be computed from the unlabelled graph. We provide evidence that ground-truth communities in real-world graphs are often convex and empirically compare our proposed approach with other active learning algorithms.

Poster
Novel Upper Bounds for the Constrained Most Probable Explanation Task

Tahrima Rahman, Sara Rouhani, Vibhav Giridhar Gogate

展开摘要

We propose several schemes for upper bounding the optimal value of the constrained most probable explanation (CMPE) problem. Given a set of discrete random variables, two probabilistic graphical models defined over them and a real number $q$, this problem involves finding an assignment of values to all the variables such that the probability of the assignment is maximized according to the first model and is bounded by $q$ w.r.t. the second model. In prior work, it was shown that CMPE is a unifying problem with several applications and special cases including the nearest assignment problem, the decision preserving most probable explanation task and robust estimation. It was also shown that CMPE is NP-hard even on tractable models such as bounded treewidth networks and is hard for integer linear programming methods because it includes a dense global constraint. The main idea in our approach is to simplify the problem via Lagrange relaxation and decomposition to yield either a knapsack problem or the unconstrained most probable explanation (MPE) problem, and then solving the two problems, respectively using specialized knapsack algorithms and mini-buckets based upper bounding schemes. We evaluate our proposed scheme along several dimensions including quality of the bounds and computation time required on various benchmark graphical models and how it can be used to find heuristic, near-optimal feasible solutions in an example application pertaining to robust estimation and adversarial attacks on classifiers.

Poster
You are caught stealing my winning lottery ticket! Making a lottery ticket claim its ownership

Xuxi Chen, Tianlong Chen, Zhenyu Zhang, Zhangyang Wang

展开摘要

Despite tremendous success in many application scenarios, the training and inference costs of using deep learning are also rapidly increasing over time. The lottery ticket hypothesis (LTH) emerges as a promising framework to leverage a special sparse subnetwork (i.e., $\textit{winning ticket}$) instead of a full model for both training and inference, that can lower both costs without sacrificing the performance. The main resource bottleneck of LTH is however the extraordinary cost to find the sparse mask of the winning ticket. That makes the found winning ticket become a valuable asset to the owners, highlighting the necessity of protecting its copyright. Our setting adds a new dimension to the recently soaring interest in protecting against the intellectual property (IP) infringement of deep models and verifying their ownerships, since they take owners' massive/unique resources to develop or train. While existing methods explored encrypted weights or predictions, we investigate a unique way to leverage sparse topological information to perform $\textit{lottery verification}$, by developing several graph-based signatures that can be embedded as credentials. By further combining trigger set-based methods, our proposal can work in both white-box and black-box verification scenarios. Through extensive experiments, we demonstrate the effectiveness of lottery verification in diverse models (ResNet-20, ResNet-18, ResNet-50) on CIFAR-10 and CIFAR-100. Specifically, our verification is shown to be robust to removal attacks such as model fine-tuning and pruning, as well as several ambiguity attacks. Our codes are available at https://github.com/VITA-Group/NO-stealing-LTH.

Poster
Latent Matters: Learning Deep State-Space Models

Alexej Klushyn, Richard Kurle, Maximilian Soelch, Botond Cseke, Patrick van der Smagt

展开摘要

Deep state-space models (DSSMs) enable temporal predictions by learning the underlying dynamics of observed sequence data. They are often trained by maximising the evidence lower bound. However, as we show, this does not ensure the model actually learns the underlying dynamics. We therefore propose a constrained optimisation framework as a general approach for training DSSMs. Building upon this, we introduce the extended Kalman VAE (EKVAE), which combines amortised variational inference with classic Bayesian filtering/smoothing to model dynamics more accurately than RNN-based DSSMs. Our results show that the constrained optimisation framework significantly improves system identification and prediction accuracy on the example of established state-of-the-art DSSMs. The EKVAE outperforms previous models w.r.t. prediction accuracy, achieves remarkable results in identifying dynamical systems, and can furthermore successfully learn state-space representations where static and dynamic features are disentangled.

Poster
Sparsely Changing Latent States for Prediction and Planning in Partially Observable Domains

Christian Gumbsch, Martin V. Butz, Georg Martius

展开摘要

A common approach to prediction and planning in partially observable domains is to use recurrent neural networks (RNNs), which ideally develop and maintain a latent memory about hidden, task-relevant factors. We hypothesize that many of these hidden factors in the physical world are constant over time, changing only sparsely. To study this hypothesis, we propose Gated $L_0$ Regularized Dynamics (GateL0RD), a novel recurrent architecture that incorporates the inductive bias to maintain stable, sparsely changing latent states. The bias is implemented by means of a novel internal gating function and a penalty on the $L_0$ norm of latent state changes. We demonstrate that GateL0RD can compete with or outperform state-of-the-art RNNs in a variety of partially observable prediction and control tasks. GateL0RD tends to encode the underlying generative factors of the environment, ignores spurious temporal dependencies, and generalizes better, improving sampling efficiency and overall performance in model-based planning and reinforcement learning tasks. Moreover, we show that the developing latent states can be easily interpreted, which is a step towards better explainability in RNNs.

Poster