ICML 2023 论文列表

International Conference on Machine Learning

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1,865篇论文

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  • Oral
    1558.3%
  • Poster
    1,71091.7%

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Learning Subpocket Prototypes for Generalizable Structure-based Drug Design

ZAIXI ZHANG, Qi Liu

展开摘要

Generating molecules with high binding affinities to target proteins (a.k.a. structure-based drug design) is a fundamental and challenging task in drug discovery. Recently, deep generative models have achieved remarkable success in generating 3D molecules conditioned on the protein pocket. However, most existing methods consider molecular generation for protein pockets independently while neglecting the underlying connections such as subpocket-level similarities. Subpockets are the local protein environments of ligand fragments and pockets with similar subpockets may bind the same molecular fragment (motif) even though their overall structures are different. Therefore, the trained models can hardly generalize to unseen protein pockets in real-world applications. In this paper, we propose a novel method DrugGPS for generalizable structure-based drug design. With the biochemical priors, we propose to learn subpocket prototypes and construct a global interaction graph to model the interactions between subpocket prototypes and molecular motifs. Moreover, a hierarchical graph transformer encoder and motif-based 3D molecule generation scheme are used to improve the model's performance. The experimental results show that our model consistently outperforms baselines in generating realistic drug candidates with high affinities in challenging out-of-distribution settings.

Poster
Naive imputation implicitly regularizes high-dimensional linear models

Alexis Ayme, Claire Boyer, Aymeric Dieuleveut, Erwan Scornet

展开摘要

Two different approaches exist to handle missing values for prediction: either imputation, prior to fitting any predictive algorithms, or dedicated methods able to natively incorporate missing values. While imputation is widely (and easily) use, it is unfortunately biased when low-capacity predictors (such as linear models) are applied afterward. However, in practice, naive imputation exhibits good predictive performance. In this paper, we study the impact of imputation in a high-dimensional linear model with MCAR missing data. We prove that zero imputation performs an implicit regularization closely related to the ridge method, often used in high-dimensional problems. Leveraging on this connection, we establish that the imputation bias is controlled by a ridge bias, which vanishes in high dimension. As a predictor, we argue in favor of the averaged SGD strategy, applied to zero-imputed data. We establish an upper bound on its generalization error, highlighting that imputation is benign in the $d \gg \sqrt{n}$ regime. Experiments illustrate our findings.

Poster
MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation

Xingang Peng, Jiaqi Guan, Qiang Liu, Jianzhu Ma

展开摘要

Deep generative models have recently achieved superior performance in 3D molecule generation. Most of them first generate atoms and then add chemical bonds based on the generated atoms in a post-processing manner. However, there might be no corresponding bond solution for the temporally generated atoms as their locations are generated without considering potential bonds. We define this problem as the atom-bond inconsistency problem and claim it is the main reason for current approaches to generating unrealistic 3D molecules. To overcome this problem, we propose a new diffusion model called MolDiff which can generate atoms and bonds simultaneously while still maintaining their consistency by explicitly modeling the dependence between their relationships. We evaluated the generation ability of our proposed model and the quality of the generated molecules using criteria related to both geometry and chemical properties. The empirical studies showed that our model outperforms previous approaches, achieving a three-fold improvement in success rate and generating molecules with significantly better quality.

Poster
Towards Reliable Neural Specifications

Chuqin Geng, Nham Le, Xiaojie Xu, Zhaoyue Wang, Arie Gurfinkel, Xujie Si

展开摘要

Having reliable specifications is an unavoidable challenge in achieving verifiable correctness, robustness, and interpretability of AI systems. Existing specifications for neural networks are in the paradigm of data as specification. That is, the local neighborhood centering around a reference input is considered to be correct (or robust). While existing specifications contribute to verifying adversarial robustness, a significant problem in many research domains, our empirical study shows that those verified regions are somewhat tight, and thus fail to allow verification of test set inputs, making them impractical for some real-world applications. To this end, we propose a new family of specifications called neural representation as specification. This form of specifications uses the intrinsic information of neural networks, specifically neural activation patterns (NAPs), rather than input data to specify the correctness and/or robustness of neural network predictions. We present a simple statistical approach to mining neural activation patterns. To show the effectiveness of discovered NAPs, we formally verify several important properties, such as various types of misclassifications will never happen for a given NAP, and there is no ambiguity between different NAPs. We show that by using NAP, we can verify a significant region of the input space, while still recalling 84% of the data on MNIST. Moreover, we can push the verifiable bound to 10 times larger on the CIFAR10 benchmark. Thus, we argue that NAPs can potentially be used as a more reliable and extensible specification for neural network verification.

Oral
Fast Sampling of Diffusion Models via Operator Learning

Hongkai Zheng, Weili Nie, Arash Vahdat, Kamyar Azizzadenesheli, Anima Anandkumar

展开摘要

Diffusion models have found widespread adoption in various areas. However, their sampling process is slow because it requires hundreds to thousands of network evaluations to emulate a continuous process defined by differential equations. In this work, we use neural operators, an efficient method to solve the probability flow differential equations, to accelerate the sampling process of diffusion models. Compared to other fast sampling methods that have a sequential nature, we are the first to propose a parallel decoding method that generates images with only one model forward pass. We propose *diffusion model sampling with neural operator* (DSNO) that maps the initial condition, i.e., Gaussian distribution, to the continuous-time solution trajectory of the reverse diffusion process. To model the temporal correlations along the trajectory, we introduce temporal convolution layers that are parameterized in the Fourier space into the given diffusion model backbone. We show our method achieves state-of-the-art FID of 3.78 for CIFAR-10 and 7.83 for ImageNet-64 in the one-model-evaluation setting.

Poster
Loss Balancing for Fair Supervised Learning

Mohammad Mahdi Khalili, Xueru Zhang, Mahed Abroshan

展开摘要

Supervised learning models have been used in various domains such as lending, college admission, face recognition, natural language processing, etc. However, they may inherit pre-existing biases from training data and exhibit discrimination against protected social groups. Various fairness notions have been proposed to address unfairness issues. In this work, we focus on Equalized Loss (EL), a fairness notion that requires the expected loss to be (approximately) equalized across different groups. Imposing EL on the learning process leads to a non-convex optimization problem even if the loss function is convex, and the existing fair learning algorithms cannot properly be adopted to find the fair predictor under the EL constraint. This paper introduces an algorithm that can leverage off-the-shelf convex programming tools (e.g., CVXPY (Diamond and Boyd, 2016; Agrawal et al., 2018)) to efficiently find the global optimum of this non-convex optimization. In particular, we propose the ELminimizer algorithm, which finds the optimal fair predictor under EL by reducing the non-convex optimization to a sequence of convex optimization problems. We theoretically prove that our algorithm finds the global optimal solution under certain conditions. Then, we support our theoretical results through several empirical studies

Poster
On the Effectiveness of Offline RL for Dialogue Response Generation

Paloma Sodhi, Felix Wu, Ethan R. Elenberg, Kilian Q Weinberger, Ryan McDonald

展开摘要

A common training technique for language models is teacher forcing (TF). TF attempts to match human language exactly, even though identical meanings can be expressed in different ways. This motivates use of sequence-level objectives for dialogue response generation. In this paper, we study the efficacy of various offline reinforcement learning (RL) methods to maximize such objectives. We present a comprehensive evaluation across multiple datasets, models, and metrics. Offline RL shows a clear performance improvement over teacher forcing while not inducing training instability or sacrificing practical training budgets.

Poster
Regions of Reliability in the Evaluation of Multivariate Probabilistic Forecasts

Étienne Marcotte, Valentina Zantedeschi, Alexandre Drouin, Nicolas Chapados

展开摘要

Multivariate probabilistic time series forecasts are commonly evaluated via proper scoring rules, i.e., functions that are minimal in expectation for the ground-truth distribution. However, this property is not sufficient to guarantee good discrimination in the non-asymptotic regime. In this paper, we provide the first systematic finite-sample study of proper scoring rules for time series forecasting evaluation. Through a power analysis, we identify the ``region of reliability'' of a scoring rule, i.e., the set of practical conditions where it can be relied on to identify forecasting errors. We carry out our analysis on a comprehensive synthetic benchmark, specifically designed to test several key discrepancies between ground-truth and forecast distributions, and we gauge the generalizability of our findings to real-world tasks with an application to an electricity production problem. Our results reveal critical shortcomings in the evaluation of multivariate probabilistic forecasts as commonly performed in the literature.

Poster
Fast Private Kernel Density Estimation via Locality Sensitive Quantization

Tal Wagner, Yonatan Naamad, Nina Mishra

展开摘要

We study efficient mechanisms for differentially private kernel density estimation (DP-KDE). Prior work for the Gaussian kernel described algorithms that run in time exponential in the number of dimensions $d$. This paper breaks the exponential barrier, and shows how the KDE can privately be approximated in time linear in $d$, making it feasible for high-dimensional data. We also present improved bounds for low-dimensional data. Our results are obtained through a general framework, which we term Locality Sensitive Quantization (LSQ), for constructing private KDE mechanisms where existing KDE approximation techniques can be applied. It lets us leverage several efficient non-private KDE methods---like Random Fourier Features, the Fast Gauss Transform, and Locality Sensitive Hashing---and ``privatize'' them in a black-box manner. Our experiments demonstrate that our resulting DP-KDE mechanisms are fast and accurate on large datasets in both high and low dimensions.

Oral
Nonparametric Extensions of Randomized Response for Private Confidence Sets

Ian Waudby-Smith, Steven Wu, Aaditya Ramdas

展开摘要

This work derives methods for performing nonparametric, nonasymptotic statistical inference for population means under the constraint of local differential privacy (LDP). Given bounded observations $(X_1, \dots, X_n)$ with mean $\mu^\star$ that are privatized into $(Z_1, \dots, Z_n)$, we present confidence intervals (CI) and time-uniform confidence sequences (CS) for $\mu^\star$ when only given access to the privatized data. To achieve this, we introduce a nonparametric and sequentially interactive generalization of Warner's famous ``randomized response'' mechanism, satisfying LDP for arbitrary bounded random variables, and then provide CIs and CSs for their means given access to the resulting privatized observations. For example, our results yield private analogues of Hoeffding's inequality in both fixed-time and time-uniform regimes. We extend these Hoeffding-type CSs to capture time-varying (non-stationary) means, and conclude by illustrating how these methods can be used to conduct private online A/B tests.

Oral
Polynomial Preconditioning for Gradient Methods

Nikita Doikov, Anton Rodomanov

展开摘要

We study first-order methods with preconditioning for solving structured convex optimization problems. We propose a new family of preconditioners generated by the symmetric polynomials. They provide the first-order optimization methods with a provable improvement of the condition number, cutting the gaps between highest eigenvalues, without explicit knowledge of the actual spectrum. We give a stochastic interpretation of this preconditioning in terms of the coordinate volume sampling and compare it with other classical approaches, including the Chebyshev polynomials. We show how to incorporate a polynomial preconditioning into the Gradient and Fast Gradient Methods and establish their better global complexity bounds. Finally, we propose a simple adaptive search procedure that automatically ensures the best polynomial preconditioning for the Gradient Method, minimizing the objective along a low-dimensional Krylov subspace. Numerical experiments confirm the efficiency of our preconditioning strategies for solving various machine learning problems.

Poster
PreNAS: Preferred One-Shot Learning Towards Efficient Neural Architecture Search

Haibin Wang, Ce Ge, Hesen Chen, Xiuyu Sun

展开摘要

The wide application of pre-trained models is driving the trend of once-for-all training in one-shot neural architecture search (NAS). However, training within a huge sample space damages the performance of individual subnets and requires much computation to search for a optimal model. In this paper, we present PreNAS, a search-free NAS approach that accentuates target models in one-shot training. Specifically, the sample space is dramatically reduced in advance by a zero-cost selector, and weight-sharing one-shot training is performed on the preferred architectures to alleviate update conflicts. Extensive experiments have demonstrated that PreNAS consistently outperforms state-of-the-art one-shot NAS competitors for both Vision Transformer and convolutional architectures, and importantly, enables instant specialization with zero search cost. Our code is available at https://github.com/tinyvision/PreNAS.

Poster
Towards Unbiased Training in Federated Open-world Semi-supervised Learning

Jie Zhang, Xiaosong Ma, Song Guo, Wenchao Xu

展开摘要

Federated Semi-supervised Learning (FedSSL) has emerged as a new paradigm for allowing distributed clients to collaboratively train a machine learning model over scarce labeled data and abundant unlabeled data. However, existing works for FedSSL rely on a closed-world assumption that all local training data and global testing data are from seen classes observed in the labeled dataset. It is crucial to go one step further: adapting FL models to an open-world setting, where unseen classes exist in the unlabeled data. In this paper, we propose a novel **Fed**erated**o**pen-world **S**emi-**S**upervised **L**earning (**FedoSSL**) framework, which can solve the key challenge in distributed and open-world settings, i.e., the biased training process for heterogeneously distributed unseen classes. Specifically, since the advent of a certain unseen class depends on a client basis, the locally unseen classes (exist in multiple clients) are likely to receive differentiated superior aggregation effects than the globally unseen classes (exist only in one client). We adopt an uncertainty-aware suppressed loss to alleviate the biased training between locally unseen and globally unseen classes. Besides, we enable a calibration module supplementary to the global aggregation to avoid potential conflicting knowledge transfer caused by inconsistent data distribution among different clients. The proposed FedoSSL can be easily adapted to state-of-the-art FL methods, which is also validated via extensive experiments on benchmarks and real-world datasets (CIFAR-10, CIFAR-100 and CINIC-10).

Poster
Approximation Algorithms for Fair Range Clustering

Sedjro Salomon Hotegni, Sepideh Mahabadi, Ali Vakilian

展开摘要

This paper studies the fair range clustering problem in which the data points are from different demographic groups and the goal is to pick $k$ centers with the minimum clustering cost such that each group is at least minimally represented in the centers set and no group dominates the centers set. More precisely, given a set of $n$ points in a metric space $(P, d)$ where each point belongs to one of the $\ell$ different demographics (i.e., $P = P_1 \uplus P_2 \uplus \cdots \uplus P_\ell$) and a set of $\ell$ intervals $[\alpha_1, \beta_1], \cdots, [\alpha_\ell, \beta_\ell]$ on desired number of centers from each group, the goal is to pick a set of $k$ centers $C$ with minimum $\ell_p$-clustering cost (i.e., $(\sum_{v\in P} d(v,C)^p)^{1/p}$) such that for each group $i\in \ell$, $|C\cap P_i| \in [\alpha_i, \beta_i]$. In particular, the fair range $\ell_p$-clustering captures fair range $k$-center, $k$-median and $k$-means as its special cases. In this work, we provide an efficient constant factor approximation algorithm for the fair range $\ell_p$-clustering for all values of $p\in [1,\infty)$.

Poster
Random Grid Neural Processes for Parametric Partial Differential Equations

Arnaud Vadeboncoeur, Ieva Kazlauskaite, Yanni Papandreou, Fehmi Cirak, Mark Girolami, Omer Deniz Akyildiz

展开摘要

We introduce a new class of spatially stochastic physics and data informed deep latent models for parametric partial differential equations (PDEs) which operate through scalable variational neural processes. We achieve this by assigning probability measures to the spatial domain, which allows us to treat collocation grids probabilistically as random variables to be marginalised out. Adapting this spatial statistics view, we solve forward and inverse problems for parametric PDEs in a way that leads to the construction of Gaussian process models of solution fields. The implementation of these random grids poses a unique set of challenges for inverse physics informed deep learning frameworks and we propose a new architecture called Grid Invariant Convolutional Networks (GICNets) to overcome these challenges. We further show how to incorporate noisy data in a principled manner into our physics informed model to improve predictions for problems where data may be available but whose measurement location does not coincide with any fixed mesh or grid. The proposed method is tested on a nonlinear Poisson problem, Burgers equation, and Navier-Stokes equations, and we provide extensive numerical comparisons. We demonstrate significant computational advantages over current physics informed neural learning methods for parametric PDEs while improving the predictive capabilities and flexibility of these models.

Poster
Robust One-Class Classification with Signed Distance Function using 1-Lipschitz Neural Networks

Louis Béthune, Paul Novello, Guillaume Coiffier, Thibaut Boissin, Mathieu Serrurier, Quentin VINCENOT, Andres Troya-Galvis

展开摘要

We propose a new method, dubbed One Class Signed Distance Function (OCSDF), to perform One Class Classification (OCC) by provably learning the Signed Distance Function (SDF) to the boundary of the support of any distribution. The distance to the support can be interpreted as a normality score, and its approximation using 1-Lipschitz neural networks provides robustness bounds against $l2$ adversarial attacks, an under-explored weakness of deep learning-based OCC algorithms. As a result, OCSDF comes with a new metric, certified AUROC, that can be computed at the same cost as any classical AUROC. We show that OCSDF is competitive against concurrent methods on tabular and image data while being way more robust to adversarial attacks, illustrating its theoretical properties. Finally, as exploratory research perspectives, we theoretically and empirically show how OCSDF connects OCC with image generation and implicit neural surface parametrization.

Poster
Rotation and Translation Invariant Representation Learning with Implicit Neural Representations

Sehyun Kwon, Joo Young Choi, Ernest K. Ryu

展开摘要

In many computer vision applications, images are acquired with arbitrary or random rotations and translations, and in such setups, it is desirable to obtain semantic representations disentangled from the image orientation. Examples of such applications include semiconductor wafer defect inspection, plankton microscope images, and inference on single-particle cryo-electron microscopy (cryo-EM) micro-graphs. In this work, we propose Invariant Representation Learning with Implicit Neural Representation (IRL-INR), which uses an implicit neural representation (INR) with a hypernetwork to obtain semantic representations disentangled from the orientation of the image. We show that IRL-INR can effectively learn disentangled semantic representations on more complex images compared to those considered in prior works and show that these semantic representations synergize well with SCAN to produce state-of-the-art unsupervised clustering results.

Poster
Fair Neighbor Embedding

Jaakko Peltonen, Wen Xu, Timo Nummenmaa, Jyrki Nummenmaa

展开摘要

We consider fairness in dimensionality reduction. Nonlinear dimensionality reduction yields low dimensional representations that let users visualize and explore high-dimensional data. However, traditional dimensionality reduction may yield biased visualizations overemphasizing relationships of societal phenomena to sensitive attributes or protected groups. We introduce a framework of fair neighbor embedding, the Fair Neighbor Retrieval Visualizer, which formulates fair nonlinear dimensionality reduction as an information retrieval task whose performance and fairness are quantified by information retrieval criteria. The method optimizes low-dimensional embeddings that preserve high-dimensional data neighborhoods without yielding biased association of such neighborhoods to protected groups. In experiments the method yields fair visualizations outperforming previous methods.

Poster
Mitigating Memorization of Noisy Labels by Clipping the Model Prediction

Hongxin Wei, Huiping Zhuang, RENCHUNZI XIE, Lei Feng, Gang Niu, Bo An, Yixuan Li

展开摘要

In the presence of noisy labels, designing robust loss functions is critical for securing the generalization performance of deep neural networks. Cross Entropy (CE) loss has been shown to be not robust to noisy labels due to its unboundedness. To alleviate this issue, existing works typically design specialized robust losses with the symmetric condition, which usually lead to the underfitting issue. In this paper, our key idea is to induce a loss bound at the logit level, thus universally enhancing the noise robustness of existing losses. Specifically, we propose logit clipping (LogitClip), which clamps the norm of the logit vector to ensure that it is upper bounded by a constant. In this manner, CE loss equipped with our LogitClip method is effectively bounded, mitigating the overfitting to examples with noisy labels. Moreover, we present theoretical analyses to certify the noise-tolerant ability of LogitClip. Extensive experiments show that LogitClip not only significantly improves the noise robustness of CE loss, but also broadly enhances the generalization performance of popular robust losses.

Poster
Data-Efficient Contrastive Self-supervised Learning: Most Beneficial Examples for Supervised Learning Contribute the Least

Siddharth Joshi, Baharan Mirzasoleiman

展开摘要

Self-supervised learning (SSL) learns high-quality representations from large pools of unlabeled training data. As datasets grow larger, it becomes crucial to identify the examples that contribute the most to learning such representations. This enables efficient SSL by reducing the volume of data required. Nevertheless, quantifying the value of examples for SSL has remained an open question. In this work, we address this problem for the first time, by proving that examples that contribute the most to contrastive SSL are those that have the most similar augmentations to other examples, in expectation. We provide rigorous guarantees for the generalization performance of contrastive learning on such subsets. Through extensive experiments, we show that we can safely exclude 20% of examples from CIFAR100 and 40% from STL10 and TinyImageNet, without affecting downstream task performance. In general, subsets selected by our method outperform random subsets by over 3% across these datasets. Interestingly, we also discover the subsets that contribute the most to contrastive learning are those that contribute the least to supervised learning.

Poster