ICLR 2026 论文列表

International Conference on Learning Representations

录用类型

5,358篇论文

按官方录用论文列表统计,可能与会议公布的数字略有出入。

  • Oral
    2244.2%
  • Poster
    5,13495.8%

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LINGOLY-TOO: Disentangling Reasoning from Knowledge with Templatised Orthographic Obfuscation

Jude Khouja, Lingyi Yang, Karolina Korgul, Simeon Hellsten, Vlad A. Neacșu, Harry Mayne, Ryan Othniel Kearns, Andrew M. Bean, Adam Mahdi

展开摘要

Frontier language models appear strong at solving reasoning problems, but their performance is often inflated by shortcuts such as memorisation and knowledge. We introduce LingOLY-TOO, a challenging reasoning benchmark of 6,995 questions that counters these shortcuts by applying expert-designed obfuscations to Linguistics Olympiad problems. These obfuscations preserve the underlying solution logic while removing orthographic clues that could trigger patterns from memorisation or knowledge. Our experiments show that models exploit shortcuts on the original questions as performance markedly drop upon obfuscation. Even the best reasoning models remain highly sensitive, with scores dropping from around $0.60$ on original problems to $0.48$ after obfuscation. LingOLY-TOO disentangles reasoning from knowledge, offering a clear measure of true reasoning capabilities.

Poster
PRISM: Controllable Diffusion for Compound Image Restoration with Scientific Fidelity

Rupa Kurinchi-Vendhan, Pratyusha Sharma, Antonio Torralba, Sara Beery

展开摘要

Scientific and environmental imagery are often degraded by multiple compounding factors related to sensor noise and environmental effects. Existing restoration methods typically treat these mixed effects by iteratively removing fixed categories, lacking the compositionality needed to handle real-world mixtures and often introducing cascading artifacts, overcorrection, or signal loss. Moreover, many supervised approaches rely on paired ground-truth data, which may be unavailable or impossible to simulate for real-world degradations. We present PRISM (Precision Restoration with Interpretable Separation of Mixtures), a prompted conditional diffusion framework for expert-guided restoration under compound degradations. PRISM combines (1) compound-aware supervision on mixtures of distortions and (2) a weighted contrastive disentanglement objective that aligns compound distortions with their constituent primitives to enable high-fidelity joint restoration. Our compositional latent space supports both prompt-guided and automated restoration in novel settings by generalizing to unseen combinations of degradations. We outperform image restoration baselines on unseen complex real-world degradations, including underwater visibility, under-display camera effects, and fluid distortions. PRISM also enables selective restoration. Across microscopy, wildlife monitoring, and urban weather datasets, our method enhances downstream analysis by letting experts remove only degradations that hinder analysis, avoiding black-box "over-restoration." Together, these results establish PRISM as a generalizable and controllable framework for high-fidelity restoration in domains where scientific utility is a priority.

Poster
Aria: an Agent for Retrieval and Iterative Auto-Formalization via Dependency Graph

Hanyu Wang, Ruohan Xie, Yutong Wang, Guoxiong Gao, XintaoYu, Bin Dong

展开摘要

Accurate auto-formalization of theorem statements is essential for advancing automated discovery and verification of research-level mathematics, yet remains a major bottleneck for LLMs due to hallucinations, semantic mismatches, and their inability to synthesize new definitions. To tackle these issues, we present Aria (**A**gent for **R**etrieval and **I**terative **A**utoformalization), a system for conjecture-level formalization in Lean that emulates human expert reasoning via a two-phase Graph-of-Thought process: recursively decomposing statements into a dependency graph and then constructing formalizations from grounded concepts. To ensure semantic correctness, we introduce **AriaScorer**, a checker that retrieves definitions from Mathlib for term-level grounding, enabling rigorous and reliable verification. We evaluate Aria on diverse benchmarks. On ProofNet, it achieves 91.6\% compilation success rate and 68.5\% final accuracy, surpassing previous methods. On FATE-X, a suite of challenging algebra problems from research literature, it outperforms the best baseline with 44.0\% vs. 24.0\% final accuracy. On a dataset of homological conjectures, Aria reaches 42.9\% final accuracy while all other models score 0\%.

Poster
ON THE ROLE OF IMPLICIT REGULARIZATION OF STOCHASTIC GRADIENT DESCENT IN GROUP ROBUSTNESS

Nahal Mirzaie, Alireza Alipanah, Ali Abbasi, Amirmahdi Farzane, Hossein Jafarinia, Erfan Sobhaei, Mahdi Ghaznavi, Amir Najafi, Mahdieh Soleymani Baghshah, Mohammad Hossein Rohban

展开摘要

Training with stochastic gradient descent (SGD) at moderately large learning rates has been observed to improve robustness against spurious correlations, strong correlation between non-predictive features and target labels. Yet, the mechanism underlying this effect remains unclear. In this work, we identify batch size as an additional critical factor and show that robustness gains arise from the implicit regularization of SGD, which intensifies with larger learning rates and smaller batch sizes. This implicit regularization reduces reliance on spurious or shortcut features, thereby enhancing robustness while preserving accuracy. Importantly, this effect appears unique to SGD: gradient descent (GD) does not confer the same benefit and may even exacerbate shortcut reliance. Theoretically, we establish this phenomenon in linear models by leveraging statistical formulations of spurious correlations, proving that SGD systematically suppresses spurious feature dependence. Empirically, we demonstrate that the effect extends to deep neural networks across multiple benchmarks. For the experiments and codes, please refer to this \href{https://github.com/ICLR2026-submission/implicit-regularization-in-group-robustness}{GitHub repository}.

Poster
MIMIC: Mask-Injected Manipulation Video Generation with Interaction Control

Tianxiao Chen, Jintao Rong, Huajin Chen, Jingya Wang, Tao Zhou, Jiming Chen, Qi Ye

展开摘要

Embodied intelligence faces a fundamental bottleneck from limited large-scale interaction data. Video generation offers a scalable alternative, but manipulation videos remain particularly challenging, as they require capturing subtle, contact-rich dynamics. Despite recent advances, video diffusion models still struggle to balance semantic understanding with fine-grained visual details, restricting their effectiveness in manipulation scenarios. Our key insight is that reference videos provide rich semantic and motion cues that can effectively drive manipulation video generation. Building on this, we propose MIMIC, a two-stage image-to-video diffusion framework. (1) We first introduce an Interaction-Motion-Aware (IMA) module to fuse visual features from the reference video, producing coherent semantic masks that correspond to the target image. (2) then utilize these masks as semantic control signals to guide the video generation process. Moreover, considering the ambiguity of the motion attribution, we introduce a Pair Prompt Control mechanism to disentangle object and camera motion by adding the reference video as an additional input. Extensive experiments demonstrate that MIMIC significantly outperforms existing methods, effectively preserves manipulation intent and motion details, even when handling diverse and deformable objects. Our findings underscore the effectiveness of reference-driven semantics for controllable and realistic manipulation video generation.

Poster
Accelerated Parallel Tempering via Neural Transports

Leo Zhang, Peter Potaptchik, Jiajun He, Yuanqi Du, Arnaud Doucet, Francisco Vargas, Hai-Dang Dau, Saifuddin Syed

展开摘要

Markov Chain Monte Carlo (MCMC) algorithms are essential tools in computational statistics for sampling from unnormalised probability distributions, but can be fragile when targeting high-dimensional, multimodal, or complex target distributions. Parallel Tempering (PT) enhances MCMC's sample efficiency through annealing and parallel computation, propagating samples from tractable reference distributions to intractable targets via state swapping across interpolating distributions. The effectiveness of PT is limited by the often minimal overlap between adjacent distributions in challenging problems, which requires increasing the computational resources to compensate. We introduce a framework that accelerates PT by leveraging neural samplers---including normalising flows, diffusion models, and controlled diffusions---to reduce the required overlap. Our approach utilises neural samplers in parallel, circumventing the computational burden of neural samplers while preserving the asymptotic consistency of classical PT. We demonstrate theoretically and empirically on a variety of multimodal sampling problems that our method improves sample quality, reduces the computational cost compared to classical PT, and enables efficient free energy/normalising constant estimation.

Poster
TrojanTO: Action-Level Backdoor Attacks Against Trajectory Optimization Models

Yang Dai, Oubo Ma, Xingxing Liang, Longfei Zhang, Xiaochun Cao, Shouling Ji, Jiaheng Zhang, Jincai Huang, Li Shen

展开摘要

Trajectory Optimization (TO) models have achieved remarkable success in offline reinforcement learning (offline RL). However, their vulnerability to backdoor attacks remains largely unexplored. We find that existing backdoor attacks in RL, which typically rely on reward manipulation throughout training, are largely ineffective against TO models due to their inherent sequence modeling nature and large network size. Moreover, the complexities introduced by high-dimensional continuous action further compound the challenge of injecting effective backdoors. To address these gaps, we propose TrojanTO, the first action-level backdoor attack against TO models. TrojanTO is a post-training attack and employs alternating training to forge a strong connection between triggers and target actions, ensuring high attack effectiveness. To maintain attack stealthiness, it utilizes trajectory filtering to preserve the benign performance and batch poisoning for trigger consistency. Extensive evaluations demonstrate that TrojanTO effectively implants backdoors across diverse tasks and attack objectives with a low attack budget (0.3\% of trajectories). Furthermore, TrojanTO exhibits broad applicability to DT, GDT, and DC, underscoring its scalability across diverse TO model architectures.

Poster
Are Global Dependencies Necessary? Scalable Time Series Forecasting via Local Cross-Variate Modeling

Kun Liu, Renjun Jia, Ruifeng Yang, Xirui Zeng, Yuqi Liang, Cen Chen

展开摘要

Effectively modeling cross-variate dependencies is a central, yet challenging, task in multivariate time series forecasting. While attention-based methods have advanced the state-of-the-art by capturing global cross-variate dependencies, their quadratic complexity with respect to the number of variates severely limits their scalability. In this work, we challenge the necessity of global dependency modeling. We posit, through both theoretical analysis and empirical evidence, that modeling local cross-variate interactions is not only sufficient but also more efficient for many dense dependency systems. Motivated by this core insight, we propose VPNet, a novel architecture that excels in both accuracy and efficiency. VPNet's design is founded on two key principles: a channelized reinterpretation of patch embeddings into a higher-level variate-patch field, and a specialized VarTCNBlock that operates upon it. Specifically, the model first employs a patch-level autoencoder to extract robust local representations. In a pivotal step, these representations are then re-conceptualized as a 2D field constructed over a "variates × patches" grid. The VarTCNBlock then applies depthwise 2D convolutions across this field to efficiently capture local spatio-temporal patterns (i.e., cross-variate and temporal dependencies simultaneously), followed by pointwise convolutions for feature mixing. This design ensures that the computational complexity scales linearly with the number of variates. Finally, variate-wise prediction heads map the refined historical patch representations to future ones, which are decoded back into the time domain. Extensive experiments demonstrate that VPNet not only achieves state-of-the-art performance across multiple benchmarks but also offers significant efficiency gains, establishing it as a superior and scalable solution for high-dimensional forecasting.

Poster
HEEGNet: Hyperbolic Embeddings for EEG

Shanglin Li, Chu Shiwen, Okan Koç, Yi Ding, Qibin Zhao, Motoaki Kawanabe, Ziheng Chen

展开摘要

Electroencephalography (EEG)-based brain-computer interfaces facilitate direct communication with a computer, enabling promising applications in human-computer interactions. However, their utility is currently limited because EEG decoding often suffers from poor generalization due to distribution shifts across domains (e.g., subjects). Learning robust representations that capture underlying task-relevant information would mitigate these shifts and improve generalization. One promising approach is to exploit the underlying hierarchical structure in EEG, as recent studies suggest that hierarchical cognitive processes, such as visual processing, can be encoded in EEG. Yet, most existing decoding methods rely on Euclidean embeddings, which are not well-suited for capturing hierarchical structures. In contrast, hyperbolic spaces, regarded as the continuous analogue of tree structures, provide a natural geometry for representing hierarchical data. In this study, we first demonstrate that EEG data exhibit hyperbolicity and show that hyperbolic embeddings improve generalization. Motivated by these findings, we propose HEEGNet, a hybrid hyperbolic network architecture to capture the hierarchical structure in EEG and learn domain-invariant hyperbolic embeddings. To this end, HEEGNet combines both Euclidean and hyperbolic encoders and employs a novel coarse-to-fine domain adaptation strategy. Extensive experiments on multiple public EEG datasets, covering visual evoked potentials, emotion recognition, and intracranial EEG, demonstrate that HEEGNet achieves state-of-the-art performance.

Poster
$AutoDrive\text{-}P^3$: Unified Chain of Perception–Prediction–Planning Thought via Reinforcement Fine-Tuning

Yuqi Ye, Zijian Zhang, Junhong Lin, Shangkun Sun, Changhao Peng, Wei Gao

展开摘要

Vision-language models (VLMs) are increasingly being adopted for end-to-end autonomous driving systems due to their exceptional performance in handling long-tail scenarios. However, current VLM-based approaches suffer from two major limitations: 1) Some VLMs directly output planning results without chain-of-thought (CoT) reasoning, bypassing crucial perception and prediction stages which creates a significant domain gap and compromises decision-making capability; 2) Other VLMs can generate outputs for perception, prediction, and planning tasks but employ a fragmented decision-making approach where these modules operate seperately, leading to a significant lack of synergy that undermines true planning performance. To address these limitations, we propose ${AutoDrive\text{-}P^3}$, a novel framework that seamlessly integrates $\underline{\textbf{P}}$erception, $\underline{\textbf{P}}$rediction, and $\underline{\textbf{P}}$lanning through structured reasoning. We introduce the ${P^3\text{-}CoT}$ dataset to facilitate coherent reasoning and propose ${P^3\text{-}GRPO}$, a hierarchical reinforcement learning algorithm that provides progressive supervision across all three tasks. Specifically, ${AutoDrive\text{-}P^3}$ progressively generates CoT reasoning and answers for perception, prediction, and planning, where perception provides essential information for subsequent prediction and planning, while both perception and prediction collectively contribute to the final planning decisions, enabling safer and more interpretable autonomous driving. Additionally, to balance inference efficiency with performance, we introduce dual thinking modes: detailed thinking and fast thinking. Extensive experiments on both open-loop (nuScenes) and closed-loop (NAVSIMv1/v2) benchmarks demonstrate that our approach achieves state-of-the-art performance in planning tasks.

Poster
Understanding Task Vectors in In-Context Learning: Emergence, Functionality, and Limitations

Yuxin Dong, Jiachen Jiang, Zhihui Zhu, Xia Ning

展开摘要

Task vector is a compelling mechanism for accelerating inference in in-context learning (ICL) by distilling task-specific information into a single, reusable representation. Despite their empirical success, the underlying principles governing their emergence and functionality remain unclear. This work proposes the *Task Vectors as Representative Demonstrations* conjecture, positing that task vectors encode single in-context demonstrations distilled from the original ones. We provide both theoretical and empirical support for this conjecture. First, we show that task vectors naturally emerge in linear transformers trained on triplet-formatted prompts through loss landscape analysis. Next, we predict the failure of task vectors in representing high-rank mappings and confirm this on practical LLMs. Our findings are further validated through saliency analyses and parameter visualization, suggesting an enhancement of task vectors by injecting multiple ones into few-shot prompts. Together, our results advance the understanding of task vectors and shed light on the mechanisms underlying ICL in transformer-based models.

Poster
ACCORD: Alleviating Concept Coupling through Dependence Regularization for Text-to-Image Diffusion Personalization

Shizhan Liu, Hao ZHENG, Hang Yu, Jianguo Li

展开摘要

Image personalization enables customizing Text-to-Image models with a few reference images but is plagued by "concept coupling"—the model creating spurious associations between a subject and its context. Existing methods tackle this indirectly, forcing a trade-off between personalization fidelity and text control. This paper is the first to formalize concept coupling as a statistical dependency problem, identifying two root causes: a Denoising Dependence Discrepancy that arises during the generative process, and a Prior Dependence Discrepancy within the learned concept itself. To address this, we introduce ACCORD, a framework with two targeted, plug-and-play regularization losses. The Denoising Decouple Loss minimizes dependency changes across denoising steps, while the Prior Decouple Loss aligns the concept’s relational priors with those of its superclass. Extensive experiments across subject, style, and face personalization demonstrate that ACCORD achieves a superior balance between fidelity and text control, consistently improving upon existing methods.

Poster
Mathesis: Towards Formal Theorem Proving from Natural Languages

Yu Xuejun, Jianyuan Zhong, Zijin Feng, Pengyi Zhai, Roozbeh Yousefzadeh, Wei Chong Ng, Haoxiong Liu, Ziyi Shou, Jing Xiong, Yudong Zhou, Claudia Beth Ong, Austen Jeremy Sugiarto, Yaoxi Zhang, Wai Ming Tai, Huan Cao, Dongcai Lu, Jiacheng Sun, Qiang Xu, SHEN XIN, Zhenguo Li

展开摘要

Recent advances in large language models (LLMs) show strong promise for formal reasoning. However, most LLM-based theorem provers remain constrained by the need for expert-written formal statements as inputs, limiting their applicability to real-world problems expressed in natural language. We address this gap by focusing on autoformalization, the task of translating informal problems into formal statements. We propose Mathesis, the first pipeline for the systematic study of formal theorem proving from natural language. It contributes the first autoformalizer trained with reinforcement learning, which integrates syntactic, semantic, and prover feedback as reward signals to yield accurate and verifiable formalizations. This is further supported by our novel LeanScorer framework for evaluating semantic correctness. To assess real-world applicability, we introduce Gaokao-Formal, a benchmark of 495 complex proof problems from the college entrance exams. Experiments demonstrate that our autoformalizer improves pass rates by 45% on Gaokao-Formal and 6% on MiniF2F compared to state-of-the-art baselines. Paired with provers, our autoformalizer consistently enhances proving accuracy, including a 42% gain for DeepSeek-Prover-V2 on Gaokao-Formal. Our code is available at https://anonymous.4open.science/r/Mathesis-2D14.

Poster
DELTA-Code: How RL Unlocks and Transfers New Programming Algorithms in LLMs

Yiyou Sun, Yuhan Cao, Pohao Huang, Haoyue Bai, Hannaneh Hajishirzi, Nouha Dziri, Dawn Song

展开摘要

It remains an open question whether LLMs can acquire or generalize genuinely new reasoning strategies, beyond the sharpened skills encoded in their parameters during pre-training or post-training. To attempt to answer this debate, we introduce DELTA-Code —Distributional Evaluation of Learnability and Transferrability in Algorithmic Coding, a controlled benchmark of synthetic coding problem families designed to probe two fundamental aspects: learnability—can LLMs, through reinforcement learning (RL), solve problem families where pretrained models exhibit failure with large enough attempts (pass@K=0)?—and transferrability— if learnability happens, can such skills transfer systematically to out-of-distribution (OOD) test sets? Unlike prior public coding datasets, DELTA isolates reasoning skills through templated problem generators and introduces fully OOD problem families that demand novel strategies rather than tool invocation or memorized patterns. Our experiments reveal a striking grokking phase transition: after an extended period with near-zero reward, RL-trained models abruptly climb to near-perfect accuracy. To enable learnability on previously unsolvable problem families, we explore key training ingredients such as staged warm-up with dense rewards, experience replay, curriculum training, and verification-in-the-loop. Beyond learnability, we use DELTA to evaluate transferability or generalization along exploratory, compositional, and transformative axes, as well as cross-family transfer. Results show solid gains within families and for recomposed skills, but persistent weaknesses in transformative cases. DELTA thus offers a clean testbed for probing the limits of RL-driven reasoning and for understanding how models can move beyond existing priors to acquire new algorithmic skills.

Poster
Energy-Regularized Sequential Model Editing on Hyperspheres

Qingyuan Liu, Jia-Chen Gu, Yunzhi Yao, Hong Wang, Nanyun Peng

展开摘要

Large language models (LLMs) require constant updates to remain aligned with evolving real-world knowledge. Model editing offers a lightweight alternative to retraining, but sequential editing that updates the LLM knowledge through multiple successive edits often destabilizes representations and induces catastrophic forgetting. In this work, we seek to better understand and mitigate performance degradation caused by sequential editing. We hypothesize that hyperspherical uniformity, a property that maintains uniform distribution of neuron weights on a hypersphere, helps the model remain stable, retain prior knowledge, while still accommodate new updates. We use Hyperspherical Energy (HE) to quantify neuron uniformity during editing, and examine its correlation with editing performance. Empirical studies across widely used editing methods reveals a strong correlation between HE dynamics and editing performance, with editing failures consistently coinciding with uncontrolled HE fluctuations. We further theoretically prove that HE dynamics impose a lower bound on the degradation of pretrained knowledge, highlighting why HE stability is crucial for knowledge retention. Motivated by these insights, we propose SPHERE (Sparse Projection for Hyperspherical Energy-Regularized Editing), an HE-driven regularization strategy that stabilizes neuron weight distributions, ultimately preserving prior knowledge while enabling reliable sequential updates. Specifically, SPHERE identifies a sparse space complementary to the principal hyperspherical directions of the pretrained weight matrices and projects new knowledge onto it, attenuating perturbations on the principal directions. Extensive experiments on LLaMA3 (8B) and Qwen2.5 (7B) show that SPHERE outperforms the best baseline in editing capability by an average of 16.41%, while most faithfully preserving general model performance, thereby offering a principled path toward reliable large-scale knowledge editing.

Poster
The Alignment Auditor: A Bayesian Framework for Verifying and Refining LLM Objectives

Matthieu Bou, Nyal Patel, Arjun Jagota, Satyapriya Krishna, Sonali Parbhoo

展开摘要

The objectives that Large Language Models (LLMs) implicitly optimize remain dangerously opaque, making trustworthy alignment and auditing a grand challenge. While Inverse Reinforcement Learning (IRL) can infer reward functions from behaviour, existing approaches either produce a single, overconfident reward estimate or fail to address the fundamental ambiguity of the task, known as non-identifiability. This paper introduces a principled auditing framework that reframes reward inference from a simple estimation task to a comprehensive process for verification. Our framework leverages Bayesian IRL to not only recover a distribution over objectives but to enable three critical audit capabilities: (i) Quantifying and systematically reducing non-identifiability by demonstrating posterior contraction over sequential rounds of evidence; (ii) Providing actionable, uncertainty-aware diagnostics that expose spurious shortcuts and identify out-of-distribution prompts where the inferred objective cannot be trusted; and (iii) Validating policy-level utility by showing that the refined, low-uncertainty reward can be used directly in RLHF to achieve training dynamics and toxicity reductions comparable to the ground-truth alignment process. Empirically, our framework successfully audits a detoxified LLM, yielding a well-calibrated and interpretable objective that strengthens alignment guarantees. Overall, this work provides a practical toolkit for auditors, safety teams, and regulators to verify what LLMs are truly trying to achieve, moving us toward more trustworthy and accountable AI.

Poster
Activation Steering for LLM Alignment via a Unified ODE-Based Framework

Hongjue Zhao, Haosen Sun, Jiangtao Kong, Xiaochang Li, Qineng Wang, Liwei Jiang, Qi Zhu, Tarek F. Abdelzaher, Yejin Choi, Manling Li, Huajie Shao

展开摘要

Activation steering, or representation engineering, offers a lightweight approach to align large language models (LLMs) by manipulating their internal activations at inference time. However, current methods suffer from two key limitations: \textit{(i)} the lack of a unified theoretical framework for guiding the design of steering directions, and \textit{(ii)} an over-reliance on \textit{one-step steering} that fail to capture complex patterns of activation distributions. In this work, we propose a unified ordinary differential equations (ODEs)-based \textit{theoretical} framework for activation steering in LLM alignment. We show that conventional activation addition can be interpreted as a first-order approximation to the solution of an ODE. Based on this ODE perspective, identifying a steering direction becomes equivalent to designing a \textit{barrier function} from control theory. Derived from this framework, we introduce \textsc{Bodes} (\textbf{B}arrier function-guided \textbf{ODE} \textbf{S}teering), which shows \textit{empirical} advancement in LLM alignment. \textsc{Bodes} identifies steering directions by defining the barrier function as the log-density ratio between positive and negative activations, and employs it to construct an ODE for \textit{multi-step and adaptive} steering. Compared to state-of-the-art activation steering methods, \textsc{Bodes} achieves consistent empirical improvements on diverse LLM alignment benchmarks, a notable 7\% improvement over TruthfulQA, and 2\% over RealToxicityPrompts, and 2% over UltraFeedback. Our work establishes a principled new view of activation steering in LLM alignment by unifying its theoretical foundations via ODEs, and validating it empirically through the proposed \textsc{Bodes} method. We will release our source code after the paper is published.

Poster
BioBO: Biology-informed Bayesian Optimization for Perturbation Design

Yanke Li, Tianyu Cui, Tommaso Mansi, Mangal Prakash, Rui Liao

展开摘要

Efficient design of genomic perturbation experiments is crucial for accelerating drug discovery and therapeutic target identification, yet exhaustive perturbation of the human genome remains infeasible due to the vast search space of potential genetic interactions and experimental constraints. Bayesian optimization (BO) has emerged as a powerful framework for selecting informative interventions, but existing approaches often fail to exploit domain-specific biological prior knowledge. We propose Biology-Informed Bayesian Optimization (BioBO), a method that integrates Bayesian optimization with multimodal gene embeddings and enrichment analysis, a widely used tool for gene prioritization in biology, to enhance surrogate modeling and acquisition strategies. BioBO combines biologically grounded priors with acquisition functions in a principled framework, which biases the search toward promising genes while maintaining the ability to explore uncertain regions. Through experiments on established public benchmarks and datasets, we demonstrate that BioBO improves labeling efficiency by 25-40\%, and consistently outperforms conventional BO by identifying top-performing perturbations more effectively. Moreover, by incorporating enrichment analysis, BioBO yields pathway-level explanations for selected perturbations, offering mechanistic interpretability that links designs to biologically coherent regulatory circuits.

Poster
A Federated Generalized Expectation-Maximization Algorithm for Mixture Models with an Unknown Number of Components

Michael Ibrahim, Nagi Gebraeel, Weijun Xie

展开摘要

We study the problem of federated clustering when the total number of clusters $K$ across clients is unknown, and the clients have heterogeneous but potentially overlapping cluster sets in their local data. To that end, we develop FedGEM: a federated generalized expectation-maximization algorithm for the training of mixture models with an unknown number of components. Our proposed algorithm relies on each of the clients performing EM steps locally, and constructing an uncertainty set around the maximizer associated with each local component. The central server utilizes the uncertainty sets to learn potential cluster overlaps between clients, and infer the global number of clusters via closed-form computations. We perform a thorough theoretical study of our algorithm, presenting probabilistic convergence guarantees under common assumptions. Subsequently, we study the specific setting of isotropic GMMs, providing tractable, low-complexity computations to be performed by each client during each iteration of the algorithm, as well as rigorously verifying assumptions required for algorithm convergence. We perform various numerical experiments, where we empirically demonstrate that our proposed method achieves comparable performance to centralized EM, and that it outperforms various existing federated clustering methods.

Poster
Robustness in Text-Attributed Graph Learning: Insights, Trade-offs, and New Defenses

Runlin Lei, Lu Yi, Mingguo He, Pengyu Qiu, Zhewei Wei, Yongchao Liu, Chuntao Hong

展开摘要

While Graph Neural Networks (GNNs) and Large Language Models (LLMs) are powerful approaches for learning on Text-Attributed Graphs (TAGs), a comprehensive understanding of their robustness remains elusive. Current evaluations are fragmented, failing to systematically investigate the distinct effects of textual and structural perturbations across diverse models and attack scenarios. To address these limitations, we introduce a unified and comprehensive framework to evaluate robustness in TAG learning. Our framework evaluates classical GNNs, robust GNNs (RGNNs), and GraphLLMs across ten datasets from four domains, under diverse text-based, structure-based, and hybrid perturbations in both poisoning and evasion scenarios. Our extensive analysis reveals multiple findings, among which three are particularly noteworthy: 1) models have inherent robustness trade-offs between text and structure, 2) the performance of GNNs and RGNNs depends heavily on the text encoder and attack type, and 3) GraphLLMs are particularly vulnerable to training data corruption. To overcome the identified trade-offs, we introduce SFT-auto, a novel framework that delivers superior and balanced robustness against both textual and structural attacks within a single model. Our work establishes a foundation for future research on TAG security and offers practical solutions for robust TAG learning in adversarial environments. Our code is available at: https://github.com/Leirunlin/TGRB.

Poster