ICLR 2025 论文列表

International Conference on Learning Representations

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3,703篇论文

按官方录用论文列表统计,可能与会议公布的数字略有出入。

  • Oral
    2135.8%
  • Spotlight
    38010.3%
  • Poster
    3,11084.0%

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CAMEx: Curvature-aware Merging of Experts

Viet Dung Nguyen, Minh Nguyen Hoang, Luc Nguyen, Rachel Teo, Tan Minh Nguyen, Linh Duy Tran

展开摘要

Existing methods for merging experts during model training and fine-tuning predominantly rely on Euclidean geometry, which assumes a flat parameter space. This assumption can limit the model's generalization ability, especially during the pre-training phase, where the parameter manifold might exhibit more complex curvature. Curvature-aware merging methods typically require additional information and computational resources to approximate the Fisher Information Matrix, adding memory overhead. In this paper, we introduce CAMEx (Curvature-Aware Merging of Experts), a novel expert merging protocol that incorporates natural gradients to account for the non-Euclidean curvature of the parameter manifold. By leveraging natural gradients, CAMEx adapts more effectively to the structure of the parameter space, improving alignment between model updates and the manifold's geometry. This approach enhances both pre-training and fine-tuning, resulting in better optimization trajectories and improved generalization without the substantial memory overhead typically associated with curvature-aware methods. Our contributions are threefold: (1) CAMEx significantly outperforms traditional Euclidean-based expert merging techniques across various natural language processing tasks, leading to enhanced performance during pre-training and fine-tuning; (2) we introduce a dynamic merging architecture that optimizes resource utilization, achieving high performance while reducing computational costs, facilitating efficient scaling of large language models; and (3) we provide both theoretical and empirical evidence to demonstrate the efficiency of our proposed method. The code is publicly available at: https://github.com/kpup1710/CAMEx.

Poster
ONLINE EPSILON NET & PIERCING SET FOR GEOMETRIC CONCEPTS

Sujoy Bhore, Devdan Dey, Satyam Singh

展开摘要

VC-dimension (Vapnik & Chervonenkis (1971)) and $\varepsilon$-nets (Haussler & Welzl (1987)) are key concepts in Statistical Learning Theory. Intuitively, VC-dimension is a measure of the size of a class of sets. The famous $\varepsilon$-net theorem, a fundamental result in Discrete Geometry, asserts that if the VC-dimension of a set system is bounded, then a small sample exists that intersects all sufficiently large sets. In online learning scenarios where data arrives sequentially, the VC-dimension helps to bound the complexity of the set system, and $\varepsilon$-nets ensure the selection of a small representative set. This sampling framework is crucial in various domains, including spatial data analysis, motion planning in dynamic environments, optimization of sensor networks, and feature extraction in computer vision, among others. Motivated by these applications, we study the online $\varepsilon$-net problem for geometric concepts with bounded VC-dimension. While the offline version of this problem has been extensively studied, surprisingly, there are no known theoretical results for the online version to date. We present the first deterministic online algorithm with an optimal competitive ratio for intervals in $\mathbb{R}$. Next, we give a randomized online algorithm with a near-optimal competitive ratio for axis-aligned boxes in $\mathbb{R}^d$, for $d\le 3$. Furthermore, we introduce a novel technique to analyze similar-sized objects of constant description complexity in $\mathbb{R}^d$, which may be of independent interest. Next, we focus on the continuous version of this problem (called online piercing set), where ranges of the set system are geometric concepts in $\mathbb{R}^d$ arriving in an online manner, but the universe is the entire ambient space, and the objective is to choose a small sample that intersects all the ranges. Although online piercing set is a very well-studied problem in the literature, to our surprise, very few works have addressed generic geometric concepts without any assumption about the sizes. We advance this field by proposing asymptotically optimal competitive deterministic algorithms for boxes and ellipsoids in $\mathbb{R}^d$, for any $d\in\mathbb{N}$.

Poster
ViBiDSampler: Enhancing Video Interpolation Using Bidirectional Diffusion Sampler

Serin Yang, Taesung Kwon, Jong Chul Ye

展开摘要

Recent progress in large-scale text-to-video (T2V) and image-to-video (I2V) diffusion models has greatly enhanced video generation, especially in terms of keyframe interpolation. However, current image-to-video diffusion models, while powerful in generating videos from a single conditioning frame, need adaptation for two-frame (start \& end) conditioned generation, which is essential for effective bounded interpolation. Unfortunately, existing approaches that fuse temporally forward and backward paths in parallel often suffer from off-manifold issues, leading to artifacts or requiring multiple iterative re-noising steps. In this work, we introduce a novel, bidirectional sampling strategy to address these off-manifold issues without requiring extensive re-noising or fine-tuning. Our method employs sequential sampling along both forward and backward paths, conditioned on the start and end frames, respectively, ensuring more coherent and on-manifold generation of intermediate frames. Additionally, we incorporate advanced guidance techniques, CFG++ and DDS, to further enhance the interpolation process. By integrating these, our method achieves state-of-the-art performance, efficiently generating high-quality, smooth videos between keyframes. On a single 3090 GPU, our method can interpolate 25 frames at 1024$\times$576 resolution in just 195 seconds, establishing it as a leading solution for keyframe interpolation. Project page: https://vibidsampler.github.io/

Poster
Misspecified $Q$-Learning with Sparse Linear Function Approximation: Tight Bounds on Approximation Error

Ally Yalei Du, Lin Yang, Ruosong Wang

展开摘要

The recent work by Dong and Yang (2023) showed for misspecified sparse linear bandits, one can obtain an $O(\epsilon)$-optimal policy using a polynomial number of samples when the sparsity is a constant, where $\epsilon$ is the misspecification error. This result is in sharp contrast to misspecified linear bandits without sparsity, which require an exponential number of samples to get the same guarantee. In order to study whether the analog result is possible in the reinforcement learning setting, we consider the following problem: assuming the optimal $Q$-function is a $d$-dimensional linear function with sparsity $k$ and misspecification error $\epsilon$, whether we can obtain an $O(\epsilon)$-optimal policy using number of samples polynomially in the feature dimension $d$. We first demonstrate why the standard approach based on Bellman backup or the existing optimistic value function elimination approach such as OLIVE (Jiang et al., 2017) achieves suboptimal guarantees for this problem. We then design a novel elimination-based algorithm to show one can obtain an $O(H\epsilon)$-optimal policy with sample complexity polynomially in the feature dimension $d$ and planning horizon $H$. Lastly, we complement our upper bound with an $\tilde \Omega(H\epsilon)$ suboptimality lower bound, giving a complete picture of this problem.

Poster
Vision-RWKV: Efficient and Scalable Visual Perception with RWKV-Like Architectures

Yuchen Duan, Weiyun Wang, Zhe Chen, Xizhou Zhu, Lewei Lu, Tong Lu, Yu Qiao, Hongsheng Li, Jifeng Dai, Wenhai Wang

展开摘要

Transformers have revolutionized computer vision and natural language processing, but their high computational complexity limits their application in high-resolution image processing and long-context analysis. This paper introduces Vision-RWKV (VRWKV), a model that builds upon the RWKV architecture from the NLP field with key modifications tailored specifically for vision tasks. Similar to the Vision Transformer (ViT), our model demonstrates robust global processing capabilities, efficiently handles sparse inputs like masked images, and can scale up to accommodate both large-scale parameters and extensive datasets. Its distinctive advantage is its reduced spatial aggregation complexity, enabling seamless processing of high-resolution images without the need for window operations. Our evaluations demonstrate that VRWKV surpasses ViT's performance in image classification and has significantly faster speeds and lower memory usage processing high-resolution inputs. In dense prediction tasks, it outperforms window-based models, maintaining comparable speeds. These results highlight VRWKV's potential as a more efficient alternative for visual perception tasks. Code and models are available at~\url{https://github.com/OpenGVLab/Vision-RWKV}.

Spotlight
Scale-Free Graph-Language Models

Jianglin Lu, Yixuan Liu, Yitian Zhang, Yun Fu

展开摘要

Graph-language models (GLMs) have demonstrated great potential in graph-based semi-supervised learning. A typical GLM consists of two key stages: graph generation and text embedding, which are usually implemented by inferring a latent graph and finetuning a language model (LM), respectively. However, the former often relies on artificial assumptions about the underlying edge distribution, while the latter requires extensive data annotations. To tackle these challenges, this paper introduces a novel GLM that integrates graph generation and text embedding within a unified framework. Specifically, for graph generation, we leverage an inherent characteristic of real edge distribution—the scale-free property—as a structural prior. We unexpectedly find that this natural property can be effectively approximated by a simple k-nearest neighbor (KNN) graph. For text embedding, we develop a graph-based pseudo-labeler that utilizes scale-free graphs to provide complementary supervision for improved LM finetuning. Extensive experiments on representative datasets validate our findings on the scale-free structural approximation of KNN graphs and demonstrate the effectiveness of integrating graph generation and text embedding with a real structural prior. Our code is available at https://github.com/Jianglin954/SFGL.

Poster
YouTube-SL-25: A Large-Scale, Open-Domain Multilingual Sign Language Parallel Corpus

Garrett Tanzer, Biao Zhang

展开摘要

Even for better-studied sign languages like American Sign Language (ASL), data is the bottleneck for machine learning research. The situation is worse yet for the many other sign languages used by Deaf/Hard of Hearing communities around the world. In this paper, we present YouTube-SL-25, a large-scale, open-domain multilingual corpus of sign language videos with seemingly well-aligned captions drawn from YouTube. With >3000 hours of videos across >25 sign languages, YouTube-SL-25 is a) >3x the size of YouTube-ASL, b) the largest parallel sign language dataset to date, and c) the first or largest parallel dataset for many of its component languages. We provide baselines for sign-to-text tasks using a unified multilingual multitask model based on T5 and report scores on benchmarks across 4 sign languages. The results demonstrate that multilingual transfer benefits both higher- and lower-resource sign languages within YouTube-SL-25.

Poster
Rectified Diffusion: Straightness Is Not Your Need in Rectified Flow

Fu-Yun Wang, Ling Yang, Zhaoyang Huang, Mengdi Wang, Hongsheng Li

展开摘要

Diffusion models have greatly improved visual generation but are hindered by slow generation speed due to the computationally intensive nature of solving generative ODEs. Rectified flow, a widely recognized solution, improves generation speed by straightening the ODE path. Its key components include: 1) using the linear interpolating diffusion form of flow-matching, 2) employing $\boldsymbol v$-prediction, and 3) performing rectification (a.k.a. reflow). In this paper, we argue that the success of rectification primarily lies in using a pretrained diffusion model to obtain matched pairs of noise and samples, followed by retraining with these matched noise-sample pairs. Based on this, components 1) and 2) are unnecessary. Furthermore, we highlight that straightness is not an essential training target for rectification; rather, it is a specific case of flow-matching models. The more critical training target is to achieve a first-order approximate ODE path, which is inherently curved for models like DDPM and Sub-VP. Building on this insight, we propose Rectified Diffusion, which generalizes the design space and application scope of rectification to encompass the broader category of diffusion models, rather than being restricted to flow-matching models. We validate our method on Stable Diffusion v1-5 and Stable Diffusion XL. Our method not only greatly simplifies the training procedure of rectified flow-based previous works (e.g., InstaFlow) but also achieves superior performance with even lower training cost. Our code is available at https://github.com/G-U-N/Rectified-Diffusion.

Poster
Is Your Model Really A Good Math Reasoner? Evaluating Mathematical Reasoning with Checklist

Zihao Zhou, Shudong Liu, Maizhen Ning, Wei Liu, Jindong Wang, Derek F. Wong, Xiaowei Huang, Qiufeng Wang, Kaizhu Huang

展开摘要

Exceptional mathematical reasoning ability is one of the key features that demonstrate the power of large language models (LLMs). How to comprehensively define and evaluate the mathematical abilities of LLMs, and even reflect the user experience in real-world scenarios, has emerged as a critical issue. Current benchmarks predominantly concentrate on problem-solving capabilities, presenting a substantial risk of model overfitting and fails to accurately measure the genuine mathematical reasoning abilities. In this paper, we argue that if a model really understands a problem, it should be robustly and readily applied across a diverse array of tasks. To this end, we introduce MathCheck, a well-designed checklist for testing task generalization and reasoning robustness, as well as an automatic tool to generate checklists efficiently. MathCheck includes multiple mathematical reasoning tasks and robustness tests to facilitate a comprehensive evaluation of both mathematical reasoning ability and behavior testing. Utilizing MathCheck, we develop MathCheck-GSM and MathCheck-GEO to assess mathematical textual reasoning and multi-modal reasoning capabilities, respectively, serving as upgraded versions of benchmarks including GSM8k, GeoQA, UniGeo, and Geometry3K. We adopt MathCheck-GSM and MathCheck-GEO to evaluate over 26 LLMs and 17 multi-modal LLMs, assessing their comprehensive mathematical reasoning abilities. Our results demonstrate that while frontier LLMs like GPT-4o continue to excel in various abilities on the checklist, many other model families exhibit a significant decline. Further experiments indicate that, compared to traditional math benchmarks, MathCheck better reflects true mathematical abilities and represents mathematical intelligence more linearly, thereby supporting our design. Using MathCheck, we can also efficiently conduct informative behavior analysis to deeply investigate models. Finally, we show that our proposed checklist paradigm can easily extend to other reasoning tasks for their comprehensive evaluation.

Poster
Efficient Diffusion Transformer Policies with Mixture of Expert Denoisers for Multitask Learning

Moritz Reuss, Jyothish Pari, Pulkit Agrawal, Rudolf Lioutikov

展开摘要

Diffusion Policies have become widely used in Imitation Learning, offering several appealing properties, such as generating multimodal and discontinuous behavior. As models are becoming larger to capture more complex capabilities, their computational demands increase, as shown by recent scaling laws. Therefore, continuing with the current architectures will present a computational roadblock. To address this gap, we propose Mixture-of-Denoising Experts (MoDE) as a novel policy for Imitation Learning. MoDE surpasses current state-of-the-art Transformer-based Diffusion Policies while enabling parameter-efficient scaling through sparse experts and noise-conditioned routing, reducing both active parameters by 40\% and inference costs by 90\% via expert caching. Our architecture combines this efficient scaling with noise-conditioned self-attention mechanism, enabling more effective denoising across different noise levels. MoDE achieves state-of-the-art performance on 134 tasks in four established imitation learning benchmarks (CALVIN and LIBERO). Notably, by pretraining MoDE on diverse robotics data, we achieve 4.01 on CALVIN ABC and 0.95 on LIBERO-90. It surpasses both CNN-based and Transformer Diffusion Policies by an average of $57\%$ across 4 benchmarks, while using 90\% fewer FLOPs and fewer active parameters compared to default Diffusion Transformer architectures. Furthermore, we conduct comprehensive ablations on MoDE's components, providing insights for designing efficient and scalable Transformer architectures for Diffusion Policies. Code and demonstrations are available at https://mbreuss.github.io/MoDE_Diffusion_Policy.

Poster
Causal Information Prioritization for Efficient Reinforcement Learning

Hongye Cao, Fan Feng, Tianpei Yang, Jing Huo, Yang Gao

展开摘要

Current Reinforcement Learning (RL) methods often suffer from sample-inefficiency, resulting from blind exploration strategies that neglect causal relationships among states, actions, and rewards. Although recent causal approaches aim to address this problem, they lack grounded modeling of reward-guided causal understanding of states and actions for goal-orientation, thus impairing learning efficiency. To tackle this issue, we propose a novel method named Causal Information Prioritization (CIP) that improves sample efficiency by leveraging factored MDPs to infer causal relationships between different dimensions of states and actions with respect to rewards, enabling the prioritization of causal information. Specifically, CIP identifies and leverages causal relationships between states and rewards to execute counterfactual data augmentation to prioritize high-impact state features under the causal understanding of the environments. Moreover, CIP integrates a causality-aware empowerment learning objective, which significantly enhances the agent's execution of reward-guided actions for more efficient exploration in complex environments. To fully assess the effectiveness of CIP, we conduct extensive experiments across $39$ tasks in $5$ diverse continuous control environments, encompassing both locomotion and manipulation skills learning with pixel-based and sparse reward settings. Experimental results demonstrate that CIP consistently outperforms existing RL methods across a wide range of scenarios.

Poster
HARDMath: A Benchmark Dataset for Challenging Problems in Applied Mathematics

Jingxuan Fan, Sarah Martinson, Erik Y. Wang, Kaylie Hausknecht, Jonah Brenner, Danxian Liu, Nianli Peng, Corey Wang, Michael Brenner

展开摘要

Advanced applied mathematics problems are underrepresented in existing Large Language Model (LLM) benchmark datasets. To address this, we introduce $\textbf{HARDMath}$, a dataset inspired by a graduate course on asymptotic methods, featuring challenging applied mathematics problems that require analytical approximation techniques. These problems demand a combination of mathematical reasoning, computational tools, and subjective judgment, making them difficult for LLMs. Our framework auto-generates a large number of problems with solutions validated against numerical ground truths. We evaluate both open- and closed-source LLMs on $\textbf{HARDMath-mini}$, a sub-sampled test set of 366 problems, as well as on 40 word problems formulated in applied science contexts. Even leading closed-source models like GPT-4 achieve only 43.8% overall accuracy with few-shot Chain-of-Thought prompting, and all models demonstrate significantly lower performance compared to results on existing mathematics benchmark datasets. We additionally conduct a detailed error analysis to gain insights into the failure cases of LLMs. These results demonstrate the limitations of current LLM performance on advanced graduate-level applied math problems and underscore the importance of datasets like $\textbf{HARDMath}$ to advance mathematical abilities of LLMs.

Poster
Distilling Dataset into Neural Field

Donghyeok Shin, HeeSun Bae, Gyuwon Sim, Wanmo Kang, Il-chul Moon

展开摘要

Utilizing a large-scale dataset is essential for training high-performance deep learning models, but it also comes with substantial computation and storage costs. To overcome these challenges, dataset distillation has emerged as a promising solution by compressing the large-scale dataset into a smaller synthetic dataset that retains the essential information needed for training. This paper proposes a novel parameterization framework for dataset distillation, coined Distilling Dataset into Neural Field (DDiF), which leverages the neural field to store the necessary information of the large-scale dataset. Due to the unique nature of the neural field, which takes coordinates as input and output quantity, DDiF effectively preserves the information and easily generates various shapes of data. We theoretically confirm that DDiF exhibits greater expressiveness than some previous literature when the utilized budget for a single synthetic instance is the same. Through extensive experiments, we demonstrate that DDiF achieves superior performance on several benchmark datasets, extending beyond the image domain to include video, audio, and 3D voxel. We release the code at \url{https://github.com/aailab-kaist/DDiF}.

Poster
TimeSuite: Improving MLLMs for Long Video Understanding via Grounded Tuning

Xiangyu Zeng, Kunchang Li, Chenting Wang, Xinhao Li, Tianxiang Jiang, Ziang Yan, Songze Li, Yansong Shi, Zhengrong Yue, Yi Wang, Yali Wang, Yu Qiao, Limin Wang

展开摘要

Multimodal Large Language Models (MLLMs) have demonstrated impressive performance in short video understanding. However, understanding long-form videos still remains challenging for MLLMs. This paper proposes TimeSuite, a collection of new designs to adapt the existing short-form video MLLMs for long video understanding, including a simple yet efficient framework to process long video sequence, a high-quality video dataset for grounded tuning of MLLMs, and a carefully-designed instruction tuning task to explicitly incorporate the grounding supervision in the traditional QA format. Specifically, based on VideoChat, we propose our long-video MLLM, coined as VideoChat-T, by implementing a token shuffling to compress long video tokens and introducing Temporal Adaptive Position Encoding (TAPE) to enhance the temporal awareness of visual representation. Meanwhile, we introduce the TimePro, a comprehensive grounding-centric instruction tuning dataset composed of 9 tasks and 349k high-quality grounded annotations. Notably, we design a new instruction tuning task type, called Temporal Grounded Caption, to peform detailed video descriptions with the corresponding time stamps prediction. This explicit temporal location prediction will guide MLLM to correctly attend on the visual content when generating description, and thus reduce the hallucination risk caused by the LLMs. Experimental results demonstrate that our TimeSuite provides a successful solution to enhance the long video understanding capability of short-form MLLM, achieving improvement of 5.6% and 6.8% on the benchmarks of Egoschema and VideoMME, respectively. In addition, VideoChat-T exhibits robust zero-shot temporal grounding capabilities, significantly outperforming the existing state-of-the-art MLLMs. After fine-tuning, it performs on par with the traditional supervised expert models.

Poster
Balanced Neural ODEs: nonlinear model order reduction and Koopman operator approximations

Julius Aka, Johannes Brunnemann, Jörg Eiden, Arne Speerforck, Lars Mikelsons

展开摘要

Variational Autoencoders (VAEs) are a powerful framework for learning latent representations of reduced dimensionality, while Neural ODEs excel in learning transient system dynamics. This work combines the strengths of both to generate fast surrogate models with adjustable complexity reacting on time-varying inputs signals. By leveraging the VAE’s dimensionality reduction using a non-hierarchical prior, our method adaptively assigns stochastic noise, naturally complementing known NeuralODE training enhancements and enabling probabilistic time series modeling. We show that standard Latent ODEs struggle with dimensionality reduction in systems with time-varying inputs. Our approach mitigates this by continuously propagating variational parameters through time, establishing fixed information channels in latent space. This results in a flexible and robust method that can learn different system complexities, e.g. deep neural networks or linear matrices. Hereby, it enables efficient approximation of the Koopman operator without the need for predefining its dimensionality. As our method balances dimensionality reduction and reconstruction accuracy, we call it Balanced Neural ODE (B-NODE). We demonstrate the effectiveness of this methods on several academic and real-world test cases, e.g. a power plant or MuJoCo data.

Poster
OS-ATLAS: Foundation Action Model for Generalist GUI Agents

Zhiyong Wu, Zhenyu Wu, Fangzhi Xu, Yian Wang, Qiushi Sun, Chengyou Jia, Kanzhi Cheng, Zichen Ding, Liheng Chen, Paul Pu Liang, Yu Qiao

展开摘要

Existing efforts in building GUI agents heavily rely on the availability of robust commercial Vision-Language Models (VLMs) such as GPT-4o and GeminiProVision. Practitioners are often reluctant to use open-source VLMs due to their significant performance lag compared to their closed-source counterparts, particularly in GUI grounding and Out-Of-Distribution (OOD) scenarios. To facilitate future research in this area, we developed OS-Atlas—a foundational GUI action model that excels at GUI grounding and OOD agentic tasks through innovations in both data and modeling. We have invested significant engineering effort in developing an open-source toolkit for synthesizing GUI grounding data across multiple platforms, including Windows, Linux, MacOS, Android, and the web. Leveraging this toolkit, we are releasing the largest open-source cross-platform GUI grounding corpus to date, which contains over 13 million GUI elements. This dataset, combined with innovations in model training, provides a solid foundation for OS-Atlas to understand GUI screenshots and generalize to unseen interfaces. Through extensive evaluation across six benchmarks spanning three different platforms (mobile, desktop, and web), OS-Atlas demonstrates significant performance improvements over previous state-of-the-art models. Our evaluation also uncovers valuable insights into continuously improving and scaling the agentic capabilities of open-source VLMs.

Spotlight
Relax and Merge: A Simple Yet Effective Framework for Solving Fair $k$-Means and $k$-sparse Wasserstein Barycenter Problems

Shihong Song, Guanlin Mo, Hu Ding

展开摘要

The fairness of clustering algorithms has gained widespread attention across various areas, including machine learning, In this paper, we study fair $k$-means clustering in Euclidean space. Given a dataset comprising several groups, the fairness constraint requires that each cluster should contain a proportion of points from each group within specified lower and upper bounds. Due to these fairness constraints, determining the optimal locations of $k$ centers is a quite challenging task. We propose a novel ``Relax and Merge'' framework that returns a $(1+4\rho + O(\epsilon))$-approximate solution, where $\rho$ is the approximate ratio of an off-the-shelf vanilla $k$-means algorithm and $O(\epsilon)$ can be an arbitrarily small positive number. If equipped with a PTAS of $k$-means, our solution can achieve an approximation ratio of $(5+O(\epsilon))$ with only a slight violation of the fairness constraints, which improves the current state-of-the-art approximation guarantee. Furthermore, using our framework, we can also obtain a $(1+4\rho +O(\epsilon))$-approximate solution for the $k$-sparse Wasserstein Barycenter problem, which is a fundamental optimization problem in the field of optimal transport, and a $(2+6\rho)$-approximate solution for the strictly fair $k$-means clustering with no violation, both of which are better than the current state-of-the-art methods. In addition, the empirical results demonstrate that our proposed algorithm can significantly outperform baseline approaches in terms of clustering cost.

Poster
cryoSPHERE: Single-Particle HEterogeneous REconstruction from cryo EM

Gabriel Ducrocq, Lukas Grunewald, Sebastian Westenhoff, Fredrik Lindsten

展开摘要

The three-dimensional structure of proteins plays a crucial role in determining their function. Protein structure prediction methods, like AlphaFold, offer rapid access to a protein’s structure. However, large protein complexes cannot be reliably predicted, and proteins are dynamic, making it important to resolve their full conformational distribution. Single-particle cryo-electron microscopy (cryo-EM) is a powerful tool for determining the structures of large protein complexes. Importantly, the numerous images of a given protein contain underutilized information about conformational heterogeneity. These images are very noisy projections of the protein, and traditional methods for cryo-EM reconstruction are limited to recovering only one or a few consensus conformations. In this paper, we introduce cryoSPHERE, which is a deep learning method that uses a nominal protein structure (e.g., from AlphaFold) as input, learns how to divide it into segments, and moves these segments as approximately rigid bodies to fit the different conformations present in the cryo-EM dataset. This approach provides enough constraints to enable meaningful reconstructions of single protein structural ensembles. We demonstrate this with two synthetic datasets featuring varying levels of noise, as well as two real dataset. We show that cryoSPHERE is very resilient to the high levels of noise typically encountered in experiments, where we see consistent improvements over the current state-of-the-art for heterogeneous reconstruction.

Poster
PQMass: Probabilistic Assessment of the Quality of Generative Models using Probability Mass Estimation

Pablo Lemos, Sammy Nasser Sharief, Nikolay Malkin, Salma Salhi, Connor Stone, Laurence Perreault-Levasseur, Yashar Hezaveh

展开摘要

We propose a likelihood-free method for comparing two distributions given samples from each, with the goal of assessing the quality of generative models. The proposed approach, PQMass, provides a statistically rigorous method for assessing the performance of a single generative model or the comparison of multiple competing models. PQMass divides the sample space into non-overlapping regions and applies chi-squared tests to the number of data samples that fall within each region, giving a $p$-value that measures the probability that the bin counts derived from two sets of samples are drawn from the same multinomial distribution. PQMass does not depend on assumptions regarding the density of the true distribution, nor does it rely on training or fitting any auxiliary models. We evaluate PQMass on data of various modalities and dimensions, demonstrating its effectiveness in assessing the quality, novelty, and diversity of generated samples. We further show that PQMass scales well to moderately high-dimensional data and thus obviates the need for feature extraction in practical applications.

Poster
Training Nonlinear Transformers for Chain-of-Thought Inference: A Theoretical Generalization Analysis

Hongkang Li, Songtao Lu, Pin-Yu Chen, Xiaodong Cui, Meng Wang

展开摘要

Chain-of-Thought (CoT) is an efficient prompting method that enables the reasoning ability of large language models by augmenting the query using multiple examples with multiple intermediate steps. Despite the empirical success, the theoretical understanding of how to train a Transformer to achieve the CoT ability remains less explored. This is primarily due to the technical challenges involved in analyzing the nonconvex optimization on nonlinear attention models. To the best of our knowledge, this work provides the first theoretical study of training Transformers with nonlinear attention to obtain the CoT generalization capability so that the resulting model can inference on unseen tasks when the input is augmented by examples of the new task. We first quantify the required training samples and iterations to train a Transformer model towards CoT ability. We then prove the success of its CoT generalization on unseen tasks with distribution-shifted testing data. Moreover, we theoretically characterize the conditions for an accurate reasoning output by CoT even when the provided reasoning examples contain noises and are not always accurate. In contrast, in-context learning (ICL), which can be viewed as one-step CoT without intermediate steps, may fail to provide an accurate output when CoT does. These theoretical findings are justified through experiments.

Poster