ICLR 2025 论文列表

Generative models play an important role in missing data imputation in that they aim to learn the joint distribution of full data. However, applying advanced deep generative models (such as Diffusion models) to missing data imputation is challenging due to 1) the inherent incompleteness of the training data and 2) the difficulty in performing conditional inference from unconditional generative models. To deal with these challenges, this paper introduces DiffPuter, a tailored diffusion model combined with the Expectation-Maximization (EM) algorithm for missing data imputation. DiffPuter iteratively trains a diffusion model to learn the joint distribution of missing and observed data and performs an accurate conditional sampling to update the missing values using a tailored reversed sampling strategy. Our theoretical analysis shows that DiffPuter's training step corresponds to the maximum likelihood estimation of data density (M-step), and its sampling step represents the Expected A Posteriori estimation of missing values (E-step). Extensive experiments across ten diverse datasets and comparisons with 17 different imputation methods demonstrate DiffPuter's superior performance. Notably, DiffPuter achieves an average improvement of 8.10\% in MAE and 5.64\% in RMSE compared to the most competitive existing method.

Restricted Boltzmann Machines (RBMs) are powerful tools for modeling complex systems and extracting insights from data, but their training is hindered by the slow mixing of Markov Chain Monte Carlo (MCMC) processes, especially with highly structured datasets. In this study, we build on recent theoretical advances in RBM training and focus on the stepwise encoding of data patterns into singular vectors of the coupling matrix, significantly reducing the cost of generating new samples and evaluating the quality of the model, as well as the training cost in highly clustered datasets. The learning process is analogous to the thermodynamic continuous phase transitions observed in ferromagnetic models, where new modes in the probability measure emerge in a continuous manner. We leverage the continuous transitions in the training process to define a smooth annealing trajectory that enables reliable and computationally efficient log-likelihood estimates. This approach enables online assessment during training and introduces a novel sampling strategy called Parallel Trajectory Tempering (PTT) that outperforms previously optimized MCMC methods. To mitigate the critical slowdown effect in the early stages of training, we propose a pre-training phase. In this phase, the principal components are encoded into a low-rank RBM through a convex optimization process, facilitating efficient static Monte Carlo sampling and accurate computation of the partition function. Our results demonstrate that this pre-training strategy allows RBMs to efficiently handle highly structured datasets where conventional methods fail. Additionally, our log-likelihood estimation outperforms computationally intensive approaches in controlled scenarios, while the PTT algorithm significantly accelerates MCMC processes compared to conventional methods.

We propose RelitLRM, a Large Reconstruction Model (LRM) for generating high-quality Gaussian splatting representations of 3D objects under novel illuminations from sparse (4-8) posed images captured under unknown static lighting. Unlike prior inverse rendering methods requiring dense captures and slow optimization, often causing artifacts like incorrect highlights or shadow baking, RelitLRM adopts a feed-forward transformer-based model with a novel combination of a geometry reconstructor and a relightable appearance generator based on diffusion. The model is trained end-to-end on synthetic multi-view renderings of objects under varying known illuminations. This architecture design enables to effectively decompose geometry and appearance, resolve the ambiguity between material and lighting, and capture the multi-modal distribution of shadows and specularity in the relit appearance. We show our sparse-view feed-forward RelitLRM offers competitive relighting results to state-of-the-art dense-view optimization-based baselines while being significantly faster. Our project page is available at: https://relit-lrm.github.io/.

Generative modeling of single-cell RNA-seq data is crucial for tasks like trajectory inference, batch effect removal, and simulation of realistic cellular data. However, recent deep generative models simulating synthetic single cells from noise operate on pre-processed continuous gene expression approximations, overlooking the discrete nature of single-cell data, which limits their effectiveness and hinders the incorporation of robust noise models. Additionally, aspects like controllable multi-modal and multi-label generation of cellular data remain underexplored. This work introduces CellFlow for Generation (CFGen), a flow-based conditional generative model that preserves the inherent discreteness of single-cell data. CFGen reliably generates whole-genome, multi-modal, single-cell data, improving the recovery of crucial biological data characteristics while tackling relevant generative tasks such as rare cell type augmentation and batch correction. We also introduce a novel framework for compositional data generation using Flow Matching. By showcasing CFGen on a diverse set of biological datasets and settings, we provide evidence of its value to the fields of computational biology and deep generative models.

Recent advancements in large language models (LLMs) have driven a revolutionary paradigm shift in process automation from Robotic Process Automation to Agentic Process Automation by automating the workflow orchestration procedure based on LLMs. However, existing LLMs (even the advanced OpenAI GPT-4o) are confined to achieving satisfactory capability in workflow orchestration. To address this limitation, we present WorkflowLLM, a data-centric framework elaborately designed to enhance the capability of LLMs in workflow orchestration. It first constructs a large-scale fine-tuning dataset WorkflowBench with 106, 763 samples, covering 1, 503 APIs from 83 applications across 28 categories. Specifically, the construction process can be divided into three phases: (1) Data Collection: we collect real-world workflow data from Apple Shortcuts and RoutineHub, transcribing them into Python-style code. We further equip them with generated hierarchical thought via GPT-4o-mini. (2) Query Expansion: we prompt GPT-4o-mini to generate more task queries to enrich the diversity and complexity of workflows. (3) Workflow Generation: we leverage an annotator model trained on collected data to generate workflows for synthesized queries. Finally, we merge the synthetic samples that pass quality confirmation with the collected samples to obtain the WorkflowBench. Based on WorkflowBench, we fine-tune Llama-3.1-8B to obtain WorkflowLlama. Our experiments show that WorkflowLlama demonstrates a strong capacity to orchestrate complex workflows, while also achieving notable generalization performance on previously unseen APIs. Additionally, WorkflowBench exhibits robust zero-shot generalization capabilities on an out-of-distribution task planning dataset, T-Eval. Our data and code are available at https://github.com/OpenBMB/WorkflowLLM.

In-context learning, the ability to adapt based on a few examples in the input prompt, is a ubiquitous feature of large language models (LLMs). However, as LLMs' in-context learning abilities continue to improve, understanding this phenomenon mechanistically becomes increasingly important. In particular, it is not well-understood how LLMs learn to solve specific classes of problems, such as reinforcement learning (RL) problems, in-context. Through three different tasks, we first show that Llama $3$ $70$B can solve simple RL problems in-context. We then analyze the residual stream of Llama using Sparse Autoencoders (SAEs) and find representations that closely match temporal difference (TD) errors. Notably, these representations emerge despite the model only being trained to predict the next token. We verify that these representations are indeed causally involved in the computation of TD errors and $Q$-values by performing carefully designed interventions on them. Taken together, our work establishes a methodology for studying and manipulating in-context learning with SAEs, paving the way for a more mechanistic understanding.

The Cambrian explosion of easily accessible pre-trained diffusion models suggests a demand for methods that combine multiple different pre-trained diffusion models without incurring the significant computational burden of re-training a larger combined model. In this paper, we cast the problem of combining multiple pre-trained diffusion models at the generation stage under a novel proposed framework termed superposition. Theoretically, we derive superposition from rigorous first principles stemming from the celebrated continuity equation and design two novel algorithms tailor-made for combining diffusion models in SuperDiff. SuperDiff leverages a new scalable Itô density estimator for the log likelihood of the diffusion SDE which incurs *no additional overhead* compared to the well-known Hutchinson's estimator needed for divergence calculations. We demonstrate that SuperDiff is scalable to large pre-trained diffusion models as superposition is performed *solely through composition during inference*, and also enjoys painless implementation as it combines different pre-trained vector fields through an automated re-weighting scheme. Notably, we show that SuperDiff is efficient during inference time, and mimics traditional composition operators such as the logical OR and the logical AND. We empirically demonstrate the utility of using SuperDiff for generating more diverse images on CIFAR-10, more faithful prompt conditioned image editing using Stable Diffusion, as well as improved conditional molecule generation and unconditional *de novo* structure design of proteins. https://github.com/necludov/super-diffusion

Sampling from diffusion probabilistic models (DPMs) is often expensive for high-quality image generation and typically requires many steps with a large model. In this paper, we introduce sampling Trajectory Stitching (T-Stitch), a simple yet efficient technique to improve the sampling efficiency with little or no generation degradation. Instead of solely using a large DPM for the entire sampling trajectory, T-Stitch first leverages a smaller DPM in the initial steps as a cheap drop-in replacement of the larger DPM and switches to the larger DPM at a later stage. Our key insight is that different diffusion models learn similar encodings under the same training data distribution and smaller models are capable of generating good global structures in the early steps. Extensive experiments demonstrate that T-Stitch is training-free, generally applicable for different architectures, and complements most existing fast sampling techniques with flexible speed and quality trade-offs. On DiT-XL, for example, 40% of the early timesteps can be safely replaced with a 10x faster DiT-S without performance drop on class-conditional ImageNet generation. We further show that our method can also be used as a drop-in technique to not only accelerate the popular pretrained stable diffusion (SD) models but also improve the prompt alignment of stylized SD models from the public model zoo. Finally, the explicit model allocation strategy of T-Stitch significantly reduces the need of training or searching, delivering high deployment efficiency.

Flow matching (FM) has gained significant attention as a simulation-free generative model. Unlike diffusion models, which are based on stochastic differential equations, FM employs a simpler approach by solving an ordinary differential equation with an initial condition from a normal distribution, thus streamlining the sample generation process. This paper discusses the convergence properties of FM in terms of the $p$-Wasserstein distance, a measure of distributional discrepancy. We establish that FM can achieve an almost minimax optimal convergence rate for $1 \leq p \leq 2$, presenting the first theoretical evidence that FM can reach convergence rates comparable to those of diffusion models. Our analysis extends existing frameworks by examining a broader class of mean and variance functions for the vector fields and identifies specific conditions necessary to attain these optimal rates.

This paper explores the challenge of accelerating the sequential inference process of Diffusion Probabilistic Models (DPMs). We tackle this critical issue from a dynamic systems perspective, in which the inherent sequential nature is transformed into a parallel sampling process. Specifically, we propose a unified framework that generalizes the sequential sampling process of DPMs as solving a system of banded nonlinear equations. Under this generic framework, we reveal that the Jacobian of the banded nonlinear equations system possesses a unit-diagonal structure, enabling further approximation for acceleration. Moreover, we theoretically propose an effective initialization approach for parallel sampling methods. Finally, we construct \textit{ParaSolver}, a hierarchical parallel sampling technique that enhances sampling speed without compromising quality. Extensive experiments show that ParaSolver achieves up to \textbf{12.1× speedup} in terms of wall-clock time. The source code is publicly available at https://github.com/Jianrong-Lu/ParaSolver.git.

The hypothesis of \textit{Universality} in interpretability suggests that different neural networks may converge to implement similar algorithms on similar tasks. In this work, we investigate two mainstream architectures for language modeling, namely Transformers and Mambas, to explore the extent of their mechanistic similarity. We propose to use Sparse Autoencoders (SAEs) to isolate interpretable features from these models and show that most features are similar in these two models. We also validate the correlation between feature similarity and~\univ. We then delve into the circuit-level analysis of Mamba models and find that the induction circuits in Mamba are structurally analogous to those in Transformers. We also identify a nuanced difference we call \emph{Off-by-One motif}: The information of one token is written into the SSM state in its next position. Whilst interaction between tokens in Transformers does not exhibit such trend.

The availability of multiple training algorithms and architectures for generative models requires a selection mechanism to form a single model over a group of well-trained generation models. The selection task is commonly addressed by identifying the model that maximizes an evaluation score based on the diversity and quality of the generated data. However, such a best-model identification approach overlooks the possibility that a mixture of available models can outperform each individual model. In this work, we numerically show that a mixture of generative models on benchmark image datasets can indeed achieve a better evaluation score (based on FID and KID scores), compared to the individual models. This observation motivates the development of efficient algorithms for selecting the optimal mixture of the models. To address this, we formulate a quadratic optimization problem to find an optimal mixture model achieving the maximum of kernel-based evaluation scores including kernel inception distance (KID) and Rényi kernel entropy (RKE). To identify the optimal mixture of the models using the fewest possible sample queries, we view the selection task as a multi-armed bandit (MAB) problem and propose the *Mixture Upper Confidence Bound (Mixture-UCB)* algorithm that provably converges to the optimal mixture of the involved models. More broadly, the proposed Mixture-UCB can be extended to optimize every convex quadratic function of the mixture weights in a general MAB setting. We prove a regret bound for the Mixture-UCB algorithm and perform several numerical experiments to show the success of Mixture-UCB in finding the optimal mixture of text and image generative models. The project code is available in the [Mixture-UCB Github repository](https://github.com/Rezaei-Parham/Mixture-UCB).

We develop VSD, a method for conditioning a generative model of discrete, combinatorial designs on a rare desired class by efficiently evaluating a black-box (e.g. experiment, simulation) in a batch sequential manner. We call this task active generation; we formalize active generation's requirements and desiderata, and formulate a solution via variational inference. VSD uses off-the-shelf gradient based optimization routines, can learn powerful generative models for desirable designs, and can take advantage of scalable predictive models. We derive asymptotic convergence rates for learning the true conditional generative distribution of designs with certain configurations of our method. After illustrating the generative model on images, we empirically demonstrate that VSD can outperform existing baseline methods on a set of real sequence-design problems in various protein and DNA/RNA engineering tasks.

Recent text-to-image diffusion models leverage cross-attention layers, which have been effectively utilized to enhance a range of visual generative tasks. However, our understanding of cross-attention layers remains somewhat limited. In this study, we introduce a mechanistic interpretability approach for diffusion models by constructing Head Relevance Vectors (HRVs) that align with human-specified visual concepts. An HRV for a given visual concept has a length equal to the total number of cross-attention heads, with each element representing the importance of the corresponding head for the given visual concept. To validate HRVs as interpretable features, we develop an ordered weakening analysis that demonstrates their effectiveness. Furthermore, we propose concept strengthening and concept adjusting methods and apply them to enhance three visual generative tasks. Our results show that HRVs can reduce misinterpretations of polysemous words in image generation, successfully modify five challenging attributes in image editing, and mitigate catastrophic neglect in multi-concept generation. Overall, our work provides an advancement in understanding cross-attention layers and introduces new approaches for fine-controlling these layers at the head level.

Semantic information refers to the meaning conveyed through words, phrases, and contextual relationships within a given linguistic structure. Humans can leverage semantic information, such as familiar linguistic patterns and contextual cues, to reconstruct incomplete or masked speech signals in noisy environments. However, existing speech enhancement (SE) approaches often overlook the rich semantic information embedded in speech, which is crucial for improving intelligibility, speaker consistency, and overall quality of enhanced speech signals. To enrich the SE model with semantic information, we employ language models as an efficient semantic learner and propose a comprehensive framework tailored for language model-based speech enhancement, called GenSE. Specifically, we approach SE as a conditional language modeling task rather than a continuous signal regression problem defined in existing works. This is achieved by tokenizing speech signals into semantic tokens using a pre-trained self-supervised model and into acoustic tokens using a custom-designed single-quantizer neural codec model. To improve the stability of language model predictions, we propose a hierarchical modeling method that decouples the generation of clean semantic tokens and clean acoustic tokens into two distinct stages. Moreover, we introduce a token chain prompting mechanism during the acoustic token generation stage to ensure timbre consistency throughout the speech enhancement process. Experimental results on benchmark datasets demonstrate that our proposed approach outperforms state-of-the-art SE systems in terms of speech quality and generalization capability. Codes and demos are publicly available at https://anonymous.4open.science/w/gen-se-7F52/.

We present InvMSAFold, an inverse folding method for generating protein sequences optimized for diversity and speed. For a given structure, InvMSAFold generates the parameters of a pairwise probability distribution over the space of sequences, capturing the amino acid covariances observed in Multiple Sequence Alignments (MSA) of homologous proteins. This allows for the efficient generation of highly diverse protein sequences while preserving structural and functional integrity. We demonstrate that this increased diversity in sampled sequences translates into greater variability in biochemical properties, highlighting the exciting potential of our method for applications such as protein design. The orders of magnitude improvement in sampling speed compared to existing methods unlocks new possibilities for high-throughput in virtual screening.

We introduce BiGR, a novel conditional image generation model using compact binary latent codes for generative training, focusing on enhancing both generation and representation capabilities. BiGR is the first conditional generative model that unifies generation and discrimination within the same framework. BiGR features a binary tokenizer, a masked modeling mechanism, and a binary transcoder for binary code prediction. Additionally, we introduce a novel entropy-ordered sampling method to enable efficient image generation. Extensive experiments validate BiGR's superior performance in generation quality, as measured by FID-50k, and representation capabilities, as evidenced by linear-probe accuracy. Moreover, BiGR showcases zero-shot generalization across various vision tasks, enabling applications such as image inpainting, outpainting, editing, interpolation, and enrichment, without the need for structural modifications. Our findings suggest that BiGR unifies generative and discriminative tasks effectively, paving the way for further advancements in the field. We further enable BiGR to perform text-to-image generation, showcasing its potential for broader applications.

Recent developments in 2D visual generation have been remarkably successful. However, 3D and 4D generation remain challenging in real-world applications due to the lack of large-scale 4D data and effective model design. In this paper, we propose to jointly investigate general 3D and 4D generation by leveraging camera and object movements commonly observed in daily life. Due to the lack of real-world 4D data in the community, we first propose a data curation pipeline to obtain camera poses and object motion strength from videos. Based on this pipeline, we introduce a large-scale real-world 4D scene dataset: CamVid-30K. By leveraging all the 3D and 4D data, we develop our framework, GenXD, which allows us to produce any 3D or 4D scene. We propose multiview-temporal modules, which disentangle camera and object movements, to seamlessly learn from both 3D and 4D data. Additionally, GenXD employs masked latent conditions to support a variety of conditioning views. GenXD can generate videos that follow the camera trajectory as well as consistent 3D views that can be lifted into 3D representations. We perform extensive evaluations across various real-world and synthetic datasets, demonstrating GenXD's effectiveness and versatility compared to previous methods in 3D and 4D generation.

Disentangling model activations into human-interpretable features is a central problem in interpretability. Sparse autoencoders (SAEs) have recently attracted much attention as a scalable unsupervised approach to this problem. However, our imprecise understanding of ground-truth features in realistic scenarios makes it difficult to measure the success of SAEs. To address this challenge, we propose to evaluate SAEs on specific tasks by comparing them to supervised feature dictionaries computed with knowledge of the concepts relevant to the task. Specifically, we suggest that it is possible to (1) compute supervised sparse feature dictionaries that disentangle model computations for a specific task; (2) use them to evaluate and contextualize the degree of disentanglement and control offered by SAE latents on this task. Importantly, we can do this in a way that is agnostic to whether the SAEs have learned the exact ground-truth features or a different but similarly useful representation. As a case study, we apply this framework to the indirect object identification (IOI) task using GPT-2 Small, with SAEs trained on either the IOI or OpenWebText datasets. We find that SAEs capture interpretable features for the IOI task, and that more recent SAE variants such as Gated SAEs and Top-K SAEs are competitive with supervised features in terms of disentanglement and control over the model. We also exhibit, through this setup and toy models, some qualitative phenomena in SAE training illustrating feature splitting and the role of feature magnitudes in solutions preferred by SAEs.