ICLR 2024 论文列表

International Conference on Learning Representations

录用类型

2,260篇论文

按官方录用论文列表统计,可能与会议公布的数字略有出入。

  • Oral
    863.8%
  • Spotlight
    36716.2%
  • Poster
    1,80780.0%

浏览全部论文

Pre-training Sequence, Structure, and Surface Features for Comprehensive Protein Representation Learning

Youhan Lee, Hasun Yu, Jaemyung Lee, Jaehoon Kim

展开摘要

Proteins can be represented in various ways, including their sequences, 3D structures, and surfaces. While recent studies have successfully employed sequence- or structure-based representations to address multiple tasks in protein science, there has been significant oversight in incorporating protein surface information, a critical factor for protein function. In this paper, we present a pre-training strategy that incorporates information from protein sequences, 3D structures, and surfaces to improve protein representation learning. Specifically, we utilize Implicit Neural Representations (INRs) for learning surface characteristics, and name it ProteinINR. We confirm that ProteinINR successfully reconstructs protein surfaces, and integrate this surface learning into the existing pre-training strategy of sequences and structures. Our results demonstrate that our approach can enhance performance in various downstream tasks, thereby underscoring the importance of including surface attributes in protein representation learning. These findings underline the importance of understanding protein surfaces for generating effective protein representations.

Poster
A Unified and General Framework for Continual Learning

Zhenyi Wang, Yan Li, Li Shen, Heng Huang

展开摘要

Continual Learning (CL) focuses on learning from dynamic and changing data distributions while retaining previously acquired knowledge. Various methods have been developed to address the challenge of catastrophic forgetting, including regularization-based, Bayesian-based, and memory-replay-based techniques. However, these methods lack a unified framework and common terminology for describing their approaches. This research aims to bridge this gap by introducing a comprehensive and overarching framework that encompasses and reconciles these existing methodologies. Notably, this new framework is capable of encompassing established CL approaches as special instances within a unified and general optimization objective. An intriguing finding is that despite their diverse origins, these methods share common mathematical structures. This observation highlights the compatibility of these seemingly distinct techniques, revealing their interconnectedness through a shared underlying optimization objective. Moreover, the proposed general framework introduces an innovative concept called *refresh learning*, specifically designed to enhance the CL performance. This novel approach draws inspiration from neuroscience, where the human brain often sheds outdated information to improve the retention of crucial knowledge and facilitate the acquisition of new information. In essence, *refresh learning* operates by initially unlearning current data and subsequently relearning it. It serves as a versatile plug-in that seamlessly integrates with existing CL methods, offering an adaptable and effective enhancement to the learning process. Extensive experiments on CL benchmarks and theoretical analysis demonstrate the effectiveness of the proposed *refresh learning*.

Poster
Critical Learning Periods Emerge Even in Deep Linear Networks

Michael Kleinman, Alessandro Achille, Stefano Soatto

展开摘要

Critical learning periods are periods early in development where temporary sensory deficits can have a permanent effect on behavior and learned representations. Despite the radical differences between biological and artificial networks, critical learning periods have been empirically observed in both systems. This suggests that critical periods may be fundamental to learning and not an accident of biology. Yet, why exactly critical periods emerge in deep networks is still an open question, and in particular it is unclear whether the critical periods observed in both systems depend on particular architectural or optimization details. To isolate the key underlying factors, we focus on deep linear network models, and show that, surprisingly, such networks also display much of the behavior seen in biology and artificial networks, while being amenable to analytical treatment. We show that critical periods depend on the depth of the model and structure of the data distribution. We also show analytically and in simulations that the learning of features is tied to competition between sources. Finally, we extend our analysis to multi-task learning to show that pre-training on certain tasks can damage the transfer performance on new tasks, and show how this depends on the relationship between tasks and the duration of the pre-training stage. To the best of our knowledge, our work provides the first analytically tractable model that sheds light into why critical learning periods emerge in biological and artificial networks.

Spotlight
A differentiable brain simulator bridging brain simulation and brain-inspired computing

Chaoming Wang, Tianqiu Zhang, Sichao He, Hongyaoxing Gu, Shangyang Li, Si Wu

展开摘要

Brain simulation builds dynamical models to mimic the structure and functions of the brain, while brain-inspired computing (BIC) develops intelligent systems by learning from the structure and functions of the brain. The two fields are intertwined and should share a common programming framework to facilitate each other's development. However, none of the existing software in the fields can achieve this goal, because traditional brain simulators lack differentiability for training, while existing deep learning (DL) frameworks fail to capture the biophysical realism and complexity of brain dynamics. In this paper, we introduce BrainPy, a differentiable brain simulator developed using JAX and XLA, with the aim of bridging the gap between brain simulation and BIC. BrainPy expands upon the functionalities of JAX, a powerful AI framework, by introducing complete capabilities for flexible, efficient, and scalable brain simulation. It offers a range of sparse and event-driven operators for efficient and scalable brain simulation, an abstraction for managing the intricacies of synaptic computations, a modular and flexible interface for constructing multi-scale brain models, and an object-oriented just-in-time compilation approach to handle the memory-intensive nature of brain dynamics. We showcase the efficiency and scalability of BrainPy on benchmark tasks, and highlight its differentiable simulation for biologically plausible spiking models.

Poster
Manipulating dropout reveals an optimal balance of efficiency and robustness in biological and machine visual systems

Jacob S. Prince, Gabriel Fajardo, George A. Alvarez, Talia Konkle

展开摘要

According to the efficient coding hypothesis, neural populations encode information optimally when representations are high-dimensional and uncorrelated. However, such codes may carry a cost in terms of generalization and robustness. Past empirical studies of early visual cortex (V1) in rodents have suggested that this tradeoff indeed constrains sensory representations. However, it remains unclear whether these insights generalize across the hierarchy of the human visual system, and particularly to object representations in high-level occipitotemporal cortex (OTC). To gain new empirical clarity, here we develop a family of object recognition models with parametrically varying dropout proportion $p$, which induces systematically varying dimensionality of internal responses (while controlling all other inductive biases). We find that increasing dropout produces an increasingly smooth, low-dimensional representational space. Optimal robustness to lesioning is observed at around 70% dropout, after which both accuracy and robustness decline. Representational comparison to large-scale 7T fMRI data from occipitotemporal cortex in the Natural Scenes Dataset reveals that this optimal degree of dropout is also associated with maximal emergent neural predictivity. Finally, using new techniques for achieving denoised estimates of the eigenspectrum of human fMRI responses, we compare the rate of eigenspectrum decay between model and brain feature spaces. We observe that the match between model and brain representations is associated with a common balance between efficiency and robustness in the representational space. These results suggest that varying dropout may reveal an optimal point of balance between the efficiency of high-dimensional codes and the robustness of low dimensional codes in hierarchical vision systems.

Poster
Leveraging Generative Models for Unsupervised Alignment of Neural Time Series Data

Ayesha Vermani, Il Memming Park, Josue Nassar

展开摘要

Large scale inference models are widely used in neuroscience to extract latent representations from high-dimensional neural recordings. Due to the statistical heterogeneities between sessions and animals, a new model is trained from scratch to infer the underlying dynamics for each new dataset. This is computationally expensive and does not fully leverage all the available data. Moreover, as these models get more complex, they can be challenging to train. In parallel, it is becoming common to use pre-trained models in the machine learning community for few shot and transfer learning. One major hurdle that prevents the re-use of generative models in neuroscience is the complex spatio-temporal structure of neural dynamics within and across animals. Interestingly, the underlying dynamics identified from different datasets on the same task are qualitatively similar. In this work, we exploit this observation and propose a source-free and unsupervised alignment approach that utilizes the learnt dynamics and enables the re-use of trained generative models. We validate our approach on simulations and show the efficacy of the alignment on neural recordings from the motor cortex obtained during a reaching task.

Poster
Most discriminative stimuli for functional cell type clustering

Max F Burg, Thomas Zenkel, Michaela Vystrčilová, Jonathan Oesterle, Larissa Höfling, Konstantin Friedrich Willeke, Jan Lause, Sarah Müller, Paul G. Fahey, Zhiwei Ding, Kelli Restivo, Shashwat Sridhar, Tim Gollisch, Philipp Berens, Andreas S. Tolias, Thomas Euler, Matthias Bethge, Alexander S Ecker

展开摘要

Identifying cell types and understanding their functional properties is crucial for unraveling the mechanisms underlying perception and cognition. In the retina, functional types can be identified by carefully selected stimuli, but this requires expert domain knowledge and biases the procedure towards previously known cell types. In the visual cortex, it is still unknown what functional types exist and how to identify them. Thus, for unbiased identification of the functional cell types in retina and visual cortex, new approaches are needed. Here we propose an optimization-based clustering approach using deep predictive models to obtain functional clusters of neurons using Most Discriminative Stimuli (MDS). Our approach alternates between stimulus optimization with cluster reassignment akin to an expectation-maximization algorithm. The algorithm recovers functional clusters in mouse retina, marmoset retina and macaque visual area V4. This demonstrates that our approach can successfully find discriminative stimuli across species, stages of the visual system and recording techniques. The resulting most discriminative stimuli can be used to assign functional cell types fast and on the fly, without the need to train complex predictive models or show a large natural scene dataset, paving the way for experiments that were previously limited by experimental time. Crucially, MDS are interpretable: they visualize the distinctive stimulus patterns that most unambiguously identify a specific type of neuron.

Poster
MgNO: Efficient Parameterization of Linear Operators via Multigrid

Juncai He, Xinliang Liu, Jinchao Xu

展开摘要

In this work, we propose a concise neural operator architecture for operator learning. Drawing an analogy with a conventional fully connected neural network, we define the neural operator as follows: the output of the $i$-th neuron in a nonlinear operator layer is defined by $\mathcal O_i(u) = \sigma\left( \sum_j \mathcal W_{ij} u + \mathcal B_{ij}\right)$. Here, $\mathcal W_{ij}$ denotes the bounded linear operator connecting $j$-th input neuron to $i$-th output neuron, and the bias $\mathcal B_{ij}$ takes the form of a function rather than a scalar. Given its new universal approximation property, the efficient parameterization of the bounded linear operators between two neurons (Banach spaces) plays a critical role. As a result, we introduce MgNO, utilizing multigrid structures to parameterize these linear operators between neurons. This approach offers both mathematical rigor and practical expressivity. Additionally, MgNO obviates the need for conventional lifting and projecting operators typically required in previous neural operators. Moreover, it seamlessly accommodates diverse boundary conditions. Our empirical observations reveal that MgNO exhibits superior ease of training compared to CNN-based models, while also displaying a reduced susceptibility to overfitting when contrasted with spectral-type neural operators. We demonstrate the efficiency and accuracy of our method with consistently state-of-the-art performance on different types of partial differential equations (PDEs).

Poster
UniTabE: A Universal Pretraining Protocol for Tabular Foundation Model in Data Science

Yazheng Yang, Yuqi Wang, Guang Liu, Ledell Wu, Qi Liu

展开摘要

Recent advancements in Natural Language Processing (NLP) have witnessed the groundbreaking impact of pretrained models, yielding impressive outcomes across various tasks. This study seeks to extend the power of pretraining methodologies to facilitating the prediction over tables in data science, a domain traditionally overlooked, yet inherently challenging due to the plethora of table schemas intrinsic to different tasks. The primary research questions underpinning this work revolve around the establishment of a universal pretraining protocol for tables with varied structures, the generalizability and transferability of learned knowledge across tasks, the adaptation to diverse downstream applications, and the incorporation of incremental columns over time. In response to these challenges, we introduce UniTabE, a straightforward yet effective method designed to process tables in a uniform manner, devoid of constraints imposed by specific table structures. UniTabE's core concept relies on representing each basic table element with a module, termed TabUnit. This is subsequently followed by a Transformer encoder to refine the representation. Moreover, our model is designed to facilitate pretraining and finetuning through the utilization of free-form prompts. In order to implement the pretraining phase, we curated an expansive tabular dataset comprising approximately 13 billion samples, meticulously gathered from the Kaggle platform. This research primarily centers on classification and regression tasks involving tabular data, and conducts rigorous experimental testing and analyses to validate the effectiveness of our methodology. The experimental results demonstrate UniTabE's superior performance against several baseline models across a multitude of benchmark datasets. This, therefore, underscores UniTabE's potential to significantly enhance the semantic representation of tabular data, thereby marking a significant stride for tabular data analysis.

Poster
In-Context Learning Dynamics with Random Binary Sequences

Eric J Bigelow, Ekdeep Singh Lubana, Robert P. Dick, Hidenori Tanaka, Tomer Ullman

展开摘要

Large language models (LLMs) trained on huge text datasets demonstrate intriguing capabilities, achieving state-of-the-art performance on tasks they were not explicitly trained for. The precise nature of LLM capabilities is often mysterious, and different prompts can elicit different capabilities through in-context learning. We propose a framework that enables us to analyze in-context learning dynamics to understand latent concepts underlying LLMs’ behavioral patterns. This provides a more nuanced understanding than success-or-failure evaluation benchmarks, but does not require observing internal activations as a mechanistic interpretation of circuits would. Inspired by the cognitive science of human randomness perception, we use random binary sequences as context and study dynamics of in-context learning by manipulating properties of context data, such as sequence length. In the latest GPT-3.5+ models, we find emergent abilities to generate seemingly random numbers and learn basic formal languages, with striking in-context learning dynamics where model outputs transition sharply from seemingly random behaviors to deterministic repetition.

Poster
Space and time continuous physics simulation from partial observations

Steeven JANNY, Madiha Nadri, Julie Digne, Christian Wolf

展开摘要

Modern techniques for physical simulations rely on numerical schemes and mesh-refinement methods to address trade-offs between precision and complexity, but these handcrafted solutions are tedious and require high computational power. Data-driven methods based on large-scale machine learning promise high adaptivity by integrating long-range dependencies more directly and efficiently. In this work, we focus on computational fluid dynamics and address the shortcomings of a large part of the literature, which are based on fixed support for computations and predictions in the form of regular or irregular grids. We propose a novel setup to perform predictions in a continuous spatial and temporal domain while being trained on sparse observations. We formulate the task as a double observation problem and propose a solution with two interlinked dynamical systems defined on, respectively, the sparse positions and the continuous domain, which allows to forecast and interpolate a solution from the initial condition. Our practical implementation involves recurrent GNNs and a spatio-temporal attention observer capable of interpolating the solution at arbitrary locations. Our model not only generalizes to new initial conditions (as standard auto-regressive models do) but also performs evaluation at arbitrary space and time locations. We evaluate on three standard datasets in fluid dynamics and compare to strong baselines, which are outperformed in classical settings and the extended new task requiring continuous predictions.

Spotlight
Learning Delays in Spiking Neural Networks using Dilated Convolutions with Learnable Spacings

Ilyass Hammouamri, Ismail Khalfaoui-Hassani, Timothée Masquelier

展开摘要

Spiking Neural Networks (SNNs) are a promising research direction for building power-efficient information processing systems, especially for temporal tasks such as speech recognition. In SNNs, delays refer to the time needed for one spike to travel from one neuron to another. These delays matter because they influence the spike arrival times, and it is well-known that spiking neurons respond more strongly to coincident input spikes. More formally, it has been shown theoretically that plastic delays greatly increase the expressivity in SNNs. Yet, efficient algorithms to learn these delays have been lacking. Here, we propose a new discrete-time algorithm that addresses this issue in deep feedforward SNNs using backpropagation, in an offline manner. To simulate delays between consecutive layers, we use 1D convolutions across time. The kernels contain only a few non-zero weights – one per synapse – whose positions correspond to the delays. These positions are learned together with the weights using the recently proposed Dilated Convolution with Learnable Spacings (DCLS). We evaluated our method on three datasets: the Spiking Heidelberg Dataset (SHD), the Spiking Speech Commands (SSC) and its non spiking version Google Speech Commands v0.02 (GSC) benchmarks, which require detecting temporal patterns. We used feedforward SNNs with two or three hidden fully connected layers, and vanilla leaky integrate-and-fire neurons. We showed that fixed random delays help and that learning them helps even more. Furthermore, our method outperformed the state-of-the-art in the three datasets without using recurrent connections and with substantially fewer parameters. Our work demonstrates the potential of delay learning in developing accurate and precise models for temporal data processing. Our code is based on PyTorch / SpikingJelly and available at: https://github.com/Thvnvtos/SNN-delays

Poster
Unveiling the Unseen: Identifiable Clusters in Trained Depthwise Convolutional Kernels

Zahra Babaiee, Peyman Kiasari, Daniela Rus, Radu Grosu

展开摘要

Recent advances in depthwise-separable convolutional neural networks (DS-CNNs) have led to novel architectures, that surpass the performance of classical CNNs, by a considerable scalability and accuracy margin. This paper reveals another striking property of DS-CNN architectures: discernible and explainable patterns emerge in their trained depthwise convolutional kernels in all layers. Through an extensive analysis of millions of trained filters, with different sizes and from various models, we employed unsupervised clustering with autoencoders, to categorize these filters. Astonishingly, the patterns converged into a few main clusters, each resembling the difference of Gaussian (DoG) functions, and their first and second-order derivatives. Notably, we classify over 95\% and 90\% of the filters from state-of-the-art ConvNeXtV2 and ConvNeXt models, respectively. This finding is not merely a technological curiosity; it echoes the foundational models neuroscientists have long proposed for the vision systems of mammals. Our results thus deepen our understanding of the emergent properties of trained DS-CNNs and provide a bridge between artificial and biological visual processing systems. More broadly, they pave the way for more interpretable and biologically-inspired neural network designs in the future.

Poster
Brain decoding: toward real-time reconstruction of visual perception

Yohann Benchetrit, Hubert Banville, Jean-Remi King

展开摘要

In the past five years, the use of generative and foundational AI systems has greatly improved the decoding of brain activity. Visual perception, in particular, can now be decoded from functional Magnetic Resonance Imaging (fMRI) with remarkable fidelity. This neuroimaging technique, however, suffers from a limited temporal resolution ($\approx$0.5\,Hz) and thus fundamentally constrains its real-time usage. Here, we propose an alternative approach based on magnetoencephalography (MEG), a neuroimaging device capable of measuring brain activity with high temporal resolution ($\approx$5,000 Hz). For this, we develop an MEG decoding model trained with both contrastive and regression objectives and consisting of three modules: i) pretrained embeddings obtained from the image, ii) an MEG module trained end-to-end and iii) a pretrained image generator. Our results are threefold: Firstly, our MEG decoder shows a 7X improvement of image-retrieval over classic linear decoders. Second, late brain responses to images are best decoded with DINOv2, a recent foundational image model. Third, image retrievals and generations both suggest that high-level visual features can be decoded from MEG signals, although the same approach applied to 7T fMRI also recovers better low-level features. Overall, these results, while preliminary, provide an important step towards the decoding - in real-time - of the visual processes continuously unfolding within the human brain.

Poster
Learning Planning Abstractions from Language

Weiyu Liu, Geng Chen, Joy Hsu, Jiayuan Mao, Jiajun Wu

展开摘要

This paper presents a framework for learning state and action abstractions in sequential decision-making domains. Our framework, planning abstraction from language (PARL), utilizes language-annotated demonstrations to automatically discover a symbolic and abstract action space and induce a latent state abstraction based on it. PARL consists of three stages: 1) recovering object-level and action concepts, 2) learning state abstractions, abstract action feasibility, and transition models, and 3) applying low-level policies for abstract actions. During inference, given the task description, PARL first makes abstract action plans using the latent transition and feasibility functions, then refines the high-level plan using low-level policies. PARL generalizes across scenarios involving novel object instances and environments, unseen concept compositions, and tasks that require longer planning horizons than settings it is trained on.

Poster
Defining Expertise: Applications to Treatment Effect Estimation

Alihan Hüyük, Qiyao Wei, Alicia Curth, Mihaela van der Schaar

展开摘要

Decision-makers are often experts of their domain and take actions based on their domain knowledge. Doctors, for instance, may prescribe treatments by predicting the likely outcome of each available treatment. Actions of an expert thus naturally encode part of their domain knowledge, and can help make inferences within the same domain: Knowing doctors try to prescribe the best treatment for their patients, we can tell treatments prescribed more frequently are likely to be more effective. Yet in machine learning, the fact that most decision-makers are experts is often overlooked, and “expertise” is seldom leveraged as an inductive bias. This is especially true for the literature on treatment effect estimation, where often the only assumption made about actions is that of overlap. In this paper, we argue that expertise—particularly the type of expertise the decision-makers of a domain are likely to have—can be informative in designing and selecting methods for treatment effect estimation. We formally define two types of expertise, predictive and prognostic, and demonstrate empirically that: (i) the prominent type of expertise in a domain significantly influences the performance of different methods in treatment effect estimation, and (ii) it is possible to predict the type of expertise present in a dataset, which can provide a quantitative basis for model selection.

Poster
Spike-driven Transformer V2: Meta Spiking Neural Network Architecture Inspiring the Design of Next-generation Neuromorphic Chips

Man Yao, JiaKui Hu, Tianxiang Hu, Yifan Xu, Zhaokun Zhou, Yonghong Tian, bo xu, Guoqi Li

展开摘要

Neuromorphic computing, which exploits Spiking Neural Networks (SNNs) on neuromorphic chips, is a promising energy-efficient alternative to traditional AI. CNN-based SNNs are the current mainstream of neuromorphic computing. By contrast, no neuromorphic chips are designed especially for Transformer-based SNNs, which have just emerged, and their performance is only on par with CNN-based SNNs, offering no distinct advantage. In this work, we propose a general Transformer-based SNN architecture, termed as ``Meta-SpikeFormer", whose goals are: (1) *Lower-power*, supports the spike-driven paradigm that there is only sparse addition in the network; (2) *Versatility*, handles various vision tasks; (3) *High-performance*, shows overwhelming performance advantages over CNN-based SNNs; (4) *Meta-architecture*, provides inspiration for future next-generation Transformer-based neuromorphic chip designs. Specifically, we extend the Spike-driven Transformer in \citet{yao2023spike} into a meta architecture, and explore the impact of structure, spike-driven self-attention, and skip connection on its performance. On ImageNet-1K, Meta-SpikeFormer achieves 80.0\% top-1 accuracy (55M), surpassing the current state-of-the-art (SOTA) SNN baselines (66M) by 3.7\%. This is the first direct training SNN backbone that can simultaneously supports classification, detection, and segmentation, obtaining SOTA results in SNNs. Finally, we discuss the inspiration of the meta SNN architecture for neuromorphic chip design.

Poster
LipSim: A Provably Robust Perceptual Similarity Metric

Sara Ghazanfari, Alexandre Araujo, Prashanth Krishnamurthy, Farshad Khorrami, Siddharth Garg

展开摘要

Recent years have seen growing interest in developing and applying perceptual similarity metrics. Research has shown the superiority of perceptual metrics over pixel-wise metrics in aligning with human perception and serving as a proxy for the human visual system. On the other hand, as perceptual metrics rely on neural networks, there is a growing concern regarding their resilience, given the established vulnerability of neural networks to adversarial attacks. It is indeed logical to infer that perceptual metrics may inherit both the strengths and shortcomings of neural networks. In this work, we demonstrate the vulnerability of state-of-the-art perceptual similarity metrics based on an ensemble of ViT-based feature extractors to adversarial attacks. We then propose a framework to train a robust perceptual similarity metric called LipSim (Lipschitz Similarity Metric) with provable guarantees. By leveraging 1-Lipschitz neural networks as the backbone, LipSim provides guarded areas around each data point and certificates for all perturbations within an $\ell_2$ ball. Finally, a comprehensive set of experiments shows the performance of LipSim in terms of natural and certified scores and on the image retrieval application.

Poster
MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design

Xiang Fu, Tian Xie, Andrew Scott Rosen, Tommi S. Jaakkola, Jake Allen Smith

展开摘要

Metal-organic frameworks (MOFs) are of immense interest in applications such as gas storage and carbon capture due to their exceptional porosity and tunable chemistry. Their modular nature has enabled the use of template-based methods to generate hypothetical MOFs by combining molecular building blocks in accordance with known network topologies. However, the ability of these methods to identify top-performing MOFs is often hindered by the limited diversity of the resulting chemical space. In this work, we propose MOFDiff: a coarse-grained (CG) diffusion model that generates CG MOF structures through a denoising diffusion process over the coordinates and identities of the building blocks. The all-atom MOF structure is then determined through a novel assembly algorithm. As the diffusion model generates 3D MOF structures by predicting scores in E(3), we employ equivariant graph neural networks that respect the permutational and roto-translational symmetries. We comprehensively evaluate our model's capability to generate valid and novel MOF structures and its effectiveness in designing outstanding MOF materials for carbon capture applications with molecular simulations.

Poster