ICLR 2024 论文列表

International Conference on Learning Representations

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2,260篇论文

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    36716.2%
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Protein Multimer Structure Prediction via Prompt Learning

Ziqi Gao, Xiangguo Sun, Zijing Liu, Yu Li, Hong Cheng, Jia Li

展开摘要

Understanding the 3D structures of protein multimers is crucial, as they play a vital role in regulating various cellular processes. It has been empirically confirmed that the multimer structure prediction (MSP) can be well handled in a step-wise assembly fashion using provided dimer structures and predicted protein-protein interactions (PPIs). However, due to the biological gap in the formation of dimers and larger multimers, directly applying PPI prediction techniques can often cause a poor generalization to the MSP task. To address this challenge, we aim to extend the PPI knowledge to multimers of different scales (i.e., chain numbers). Specifically, we propose PromptMSP, a pre-training and Prompt tuning framework for Multimer Structure Prediction. First, we tailor the source and target tasks for effective PPI knowledge learning and efficient inference, respectively. We design PPI-inspired prompt learning to narrow the gaps of two task formats and generalize the PPI knowledge to multimers of different scales. We provide a meta-learning strategy to learn a reliable initialization of the prompt model, enabling our prompting framework to effectively adapt to limited data for large-scale multimers. Empirically, we achieve both significant accuracy (RMSD and TM-Score) and efficiency improvements compared to advanced MSP models.

Poster
Toward effective protection against diffusion-based mimicry through score distillation

Haotian Xue, Chumeng Liang, Xiaoyu Wu, Yongxin Chen

展开摘要

While generative diffusion models excel in producing high-quality images, they can also be misused to mimic authorized images, posing a significant threat to AI systems. Efforts have been made to add calibrated perturbations to protect images from diffusion-based mimicry pipelines. However, most of the existing methods are too ineffective and even impractical to be used by individual users due to their high computation and memory requirements. In this work, we present novel findings on attacking latent diffusion models (LDM) and propose new plug-and-play strategies for more effective protection. In particular, we explore the bottleneck in attacking an LDM, discovering that the encoder module rather than the denoiser module is the vulnerable point. Based on this insight, we present our strategy using Score Distillation Sampling (SDS) to double the speed of protection and reduce memory occupation by half without compromising its strength. Additionally, we provide a robust protection strategy by counterintuitively minimizing the semantic loss, which can assist in generating more natural perturbations. Finally, we conduct extensive experiments to substantiate our findings and comprehensively evaluate our newly proposed strategies. We hope our insights and protective measures can contribute to better defense against malicious diffusion-based mimicry, advancing the development of secure AI systems.

Poster
The Wasserstein Believer: Learning Belief Updates for Partially Observable Environments through Reliable Latent Space Models

Raphaël Avalos, Florent Delgrange, Ann Nowe, Guillermo Perez, Diederik M Roijers

展开摘要

Partially Observable Markov Decision Processes (POMDPs) are used to model environments where the state cannot be perceived, necessitating reasoning based on past observations and actions. However, remembering the full history is generally intractable due to the exponential growth in the history space. Maintaining a probability distribution that models the belief over the current state can be used as a sufficient statistic of the history, but its computation requires access to the model of the environment and is often intractable. While SOTA algorithms use Recurrent Neural Networks to compress the observation-action history aiming to learn a sufficient statistic, they lack guarantees of success and can lead to sub-optimal policies. To overcome this, we propose the Wasserstein Belief Updater, an RL algorithm that learns a latent model of the POMDP and an approximation of the belief update under the assumption that the state is observable during training. Our approach comes with theoretical guarantees on the quality of our approximation ensuring that our latent beliefs allow for learning the optimal value function.

Poster
In-Context Learning through the Bayesian Prism

Madhur Panwar, Kabir Ahuja, Navin Goyal

展开摘要

In-context learning (ICL) is one of the surprising and useful features of large language models and subject of intense research. Recently, stylized meta-learning-like ICL setups have been devised that train transformers on sequences of input-output pairs $(x, f(x))$. The function $f$ comes from a function class and generalization is checked by evaluating on sequences generated from unseen functions from the same class. One of the main discoveries in this line of research has been that for several function classes, such as linear regression, transformers successfully generalize to new functions in the class. However, the inductive biases of these models resulting in this behavior are not clearly understood. A model with unlimited training data and compute is a Bayesian predictor: it learns the pretraining distribution. In this paper we empirically examine how far this Bayesian perspective can help us understand ICL. To this end, we generalize the previous meta-ICL setup to hierarchical meta-ICL setup which involve unions of multiple task families. We instantiate this setup on a diverse range of linear and nonlinear function families and find that transformers can do ICL in this setting as well. Where Bayesian inference is tractable, we find evidence that high-capacity transformers mimic the Bayesian predictor. The Bayesian perspective provides insights into the inductive bias of ICL and how transformers perform a particular task when they are trained on multiple tasks. We also find that transformers can learn to generalize to new function classes that were not seen during pretraining. This involves deviation from the Bayesian predictor. We examine these deviations in more depth offering new insights and hypotheses.

Poster
GraphPulse: Topological representations for temporal graph property prediction

Kiarash Shamsi, Farimah Poursafaei, Shenyang Huang, Bao Tran Gia Ngo, Baris Coskunuzer, Cuneyt Gurcan Akcora

展开摘要

Many real-world networks evolve over time, and predicting the evolution of such networks remains a challenging task. Graph Neural Networks (GNNs) have shown empirical success for learning on static graphs, but they lack the ability to effectively learn from nodes and edges with different timestamps. Consequently, the prediction of future properties in temporal graphs remains a relatively under-explored area. In this paper, we aim to bridge this gap by introducing a principled framework, named GraphPulse. The framework combines two important techniques for the analysis of temporal graphs within a Newtonian framework. First, we employ the Mapper method, a key tool in topological data analysis, to extract essential clustering information from graph nodes. Next, we harness the sequential modeling capabilities of Recurrent Neural Networks (RNNs) for temporal reasoning regarding the graph's evolution. Through extensive experimentation, we demonstrate that our model enhances the ROC-AUC metric by 10.2\% in comparison to the top-performing state-of-the-art method across various temporal networks. We provide the implementation of GraphPulse at https://github.com/kiarashamsi/GraphPulse.

Poster
Prediction Error-based Classification for Class-Incremental Learning

Michał Zając, Tinne Tuytelaars, Gido M van de Ven

展开摘要

Class-incremental learning (CIL) is a particularly challenging variant of continual learning, where the goal is to learn to discriminate between all classes presented in an incremental fashion. Existing approaches often suffer from excessive forgetting and imbalance of the scores assigned to classes that have not been seen together during training. In this study, we introduce a novel approach, Prediction Error-based Classification (PEC), which differs from traditional discriminative and generative classification paradigms. PEC computes a class score by measuring the prediction error of a model trained to replicate the outputs of a frozen random neural network on data from that class. The method can be interpreted as approximating a classification rule based on Gaussian Process posterior variance. PEC offers several practical advantages, including sample efficiency, ease of tuning, and effectiveness even when data are presented one class at a time. Our empirical results show that PEC performs strongly in single-pass-through-data CIL, outperforming other rehearsal-free baselines in all cases and rehearsal-based methods with moderate replay buffer size in most cases across multiple benchmarks.

Poster
Provably Robust Conformal Prediction with Improved Efficiency

Ge Yan, Yaniv Romano, Tsui-Wei Weng

展开摘要

Conformal prediction is a powerful tool to generate uncertainty sets with guaranteed coverage using any predictive model, under the assumption that the training and test data are i.i.d.. Recently, it has been shown that adversarial examples are able to manipulate conformal methods to construct prediction sets with invalid coverage rates, as the i.i.d. assumption is violated. To address this issue, a recent work, Randomized Smoothed Conformal Prediction (RSCP), was first proposed to certify the robustness of conformal prediction methods to adversarial noise. However, RSCP has two major limitations: (i) its robustness guarantee is flawed when used in practice and (ii) it tends to produce large uncertainty sets. To address these limitations, we first propose a novel framework called RSCP+ to provide provable robustness guarantee in evaluation, which fixes the issues in the original RSCP method. Next, we propose two novel methods, Post-Training Transformation (PTT) and Robust Conformal Training (RCT), to effectively reduce prediction set size with little computation overhead. Experimental results in CIFAR10, CIFAR100, and ImageNet suggest the baseline method only yields trivial predictions including full label set, while our methods could boost the efficiency by up to $4.36\times$, $5.46\times$, and $16.9\times$ respectively and provide practical robustness guarantee.

Poster
Combining Axes Preconditioners through Kronecker Approximation for Deep Learning

Sai Surya Duvvuri, Fnu Devvrit, Rohan Anil, Cho-Jui Hsieh, Inderjit S Dhillon

展开摘要

Adaptive regularization based optimization methods such as full-matrix Adagrad which use gradient second-moment information hold significant potential for fast convergence in deep neural network (DNN) training, but are memory intensive and computationally demanding for large neural nets. We develop a technique called Combining AxeS PReconditioners (CASPR), which optimizes matrix-shaped DNN parameters by finding different preconditioners for each mode/axis of the parameter and combining them using a Kronecker-sum based approximation. We show tighter convergence guarantees in stochastic optimization compared to a Kronecker product based preconditioner, Shampoo, which arises as a special case of CASPR. Furthermore, our experiments demonstrates that CASPR approximates the gradient second-moment matrix in full-matrix Adagrad more accurately, and shows significant improvement in training and generalization performance compared to existing practical adaptive regularization based methods such as Shampoo and Adam in a variety of tasks including graph neural network on OGBG-molpcba, Transformer on a universal dependencies dataset and auto-regressive large language modeling on C4 dataset.

Poster
Revisiting Link Prediction: a data perspective

Haitao Mao, Juanhui Li, Harry Shomer, Bingheng Li, Wenqi Fan, Yao Ma, Tong Zhao, Neil Shah, Jiliang Tang

展开摘要

Link prediction, a fundamental task on graphs, has proven indispensable in various applications, e.g., friend recommendation, protein analysis, and drug interaction prediction. However, since datasets span a multitude of domains, they could have distinct underlying mechanisms of link formation. Evidence in existing literature underscores the absence of a universally best algorithm suitable for all datasets. In this paper, we endeavor to explore principles of link prediction across diverse datasets from a data-centric perspective. We recognize three fundamental factors critical to link prediction: local structural proximity, global structural proximity, and feature proximity. We then unearth relationships among those factors where (i) global structural proximity only shows effectiveness when local structural proximity is deficient. (ii) The incompatibility can be found between feature and structural proximity. Such incompatibility leads to GNNs for Link Prediction (GNN4LP) consistently underperforming on edges where the feature proximity factor dominates. Inspired by these new insights from a data perspective, we offer practical instruction for GNN4LP model design and guidelines for selecting appropriate benchmark datasets for more comprehensive evaluations.

Poster
Class Incremental Learning via Likelihood Ratio Based Task Prediction

Haowei Lin, Yijia Shao, Weinan Qian, Ningxin Pan, Yiduo Guo, Bing Liu

展开摘要

Class incremental learning (CIL) is a challenging setting of continual learning, which learns a series of tasks sequentially. Each task consists of a set of unique classes. The key feature of CIL is that no task identifier (or task-id) is provided at test time. Predicting the task-id for each test sample is a challenging problem. An emerging theory-guided approach (called TIL+OOD) is to train a task-specific model for each task in a shared network for all tasks based on a task-incremental learning (TIL) method to deal with catastrophic forgetting. The model for each task is an out-of-distribution (OOD) detector rather than a conventional classifier. The OOD detector can perform both within-task (in-distribution (IND)) class prediction and OOD detection. The OOD detection capability is the key to task-id prediction during inference. However, this paper argues that using a traditional OOD detector for task-id prediction is sub-optimal because additional information (e.g., the replay data and the learned tasks) available in CIL can be exploited to design a better and principled method for task-id prediction. We call the new method TPL (Task-id Prediction based on Likelihood Ratio). TPL markedly outperforms strong CIL baselines and has negligible catastrophic forgetting. The code of TPL is publicly available at https://github.com/linhaowei1/TPL.

Poster
PAC Prediction Sets Under Label Shift

Wenwen Si, Sangdon Park, Insup Lee, Edgar Dobriban, Osbert Bastani

展开摘要

Prediction sets capture uncertainty by predicting sets of labels rather than individual labels, enabling downstream decisions to conservatively account for all plausible outcomes. Conformal inference algorithms construct prediction sets guaranteed to contain the true label with high probability. These guarantees fail to hold in the face of distribution shift, which is precisely when reliable uncertainty quantification can be most useful. We propose a novel algorithm for constructing prediction sets with PAC guarantees in the label shift setting, where the probabilities of labels can differ between the source and target distributions. Our algorithm relies on constructing confidence intervals for importance weights by propagating uncertainty through a Gaussian elimination algorithm. We evaluate our approach on four datasets: the CIFAR-10 and ChestX-Ray image datasets, the tabular CDC Heart Dataset, and the AGNews text dataset. Our algorithm satisfies the PAC guarantee while producing smaller prediction set sizes compared to several baselines.

Poster
Domain constraints improve risk prediction when outcome data is missing

Sidhika Balachandar, Nikhil Garg, Emma Pierson

展开摘要

Machine learning models are often trained to predict the outcome resulting from a human decision. For example, if a doctor decides to test a patient for disease, will the patient test positive? A challenge is that historical decision-making determines whether the outcome is observed: we only observe test outcomes for patients doctors historically tested. Untested patients, for whom outcomes are unobserved, may differ from tested patients along observed and unobserved dimensions. We propose a Bayesian model class which captures this setting. The purpose of the model is to accurately estimate risk for both tested and untested patients. Estimating this model is challenging due to the wide range of possibilities for untested patients. To address this, we propose two domain constraints which are plausible in health settings: a prevalence constraint, where the overall disease prevalence is known, and an expertise constraint, where the human decision-maker deviates from purely risk-based decision-making only along a constrained feature set. We show theoretically and on synthetic data that domain constraints improve parameter inference. We apply our model to a case study of cancer risk prediction, showing that the model's inferred risk predicts cancer diagnoses, its inferred testing policy captures known public health policies, and it can identify suboptimalities in test allocation. Though our case study is in healthcare, our analysis reveals a general class of domain constraints which can improve model estimation in many settings.

Poster
Backdoor Secrets Unveiled: Identifying Backdoor Data with Optimized Scaled Prediction Consistency

Soumyadeep Pal, Yuguang Yao, Ren Wang, Bingquan Shen, Sijia Liu

展开摘要

Modern machine learning (ML) systems demand substantial training data, often resorting to external sources. Nevertheless, this practice renders them vulnerable to backdoor poisoning attacks. Prior backdoor defense strategies have primarily focused on the identification of backdoored models or poisoned data characteristics, typically operating under the assumption of access to clean data. In this work, we delve into a relatively underexplored challenge: the automatic identification of backdoor data within a poisoned dataset, all under realistic conditions, *i.e.*, without the need for additional clean data or without manually defining a threshold for backdoor detection. We draw an inspiration from the scaled prediction consistency (SPC) technique, which exploits the prediction invariance of poisoned data to an input scaling factor. Based on this, we pose the backdoor data identification problem as a hierarchical data splitting optimization problem, leveraging a novel SPC-based loss function as the primary optimization objective. Our innovation unfolds in several key aspects. First, we revisit the vanilla SPC method, unveiling its limitations in addressing the proposed backdoor identification problem. Subsequently, we develop a bi-level optimization-based approach to precisely identify backdoor data by minimizing the advanced SPC loss. Finally, we demonstrate the efficacy of our proposal against a spectrum of backdoor attacks, encompassing basic label-corrupted attacks as well as more sophisticated clean-label attacks, evaluated across various benchmark datasets. Experiment results show that our approach often surpasses the performance of current baselines in identifying backdoor data points, resulting in about 4\%-36\% improvement in average AUROC. Codes are available at https://github.com/OPTML-Group/BackdoorMSPC.

Poster