NeurIPS 2025 Papers

Conference on Neural Information Processing Systems

Decision breakdown

5,812papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    931.6%
  • Spotlight
    73912.7%
  • Poster
    4,98085.7%

Browse all papers

Generalized and Invariant Single-Neuron In-Vivo Activity Representation Learning

Wei Wu, Yuxing Lu, Zhengrui Guo, Chi Zhang, Can Liao, Yifan Bu, Fangxu Zhou, Jinzhuo Wang

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In computational neuroscience, models representing single-neuron in-vivo activity have become essential for understanding the functional identities of individual neurons. These models, such as implicit representation methods based on Transformer architectures, contrastive learning frameworks, and variational autoencoders, aim to capture the invariant and intrinsic computational features of single neurons. The learned single-neuron computational role representations should remain invariant across changing environment and are affected by their molecular expression and location. Thus, the representations allow for in vivo prediction of the molecular cell types and anatomical locations of single neurons, facilitating advanced closed-loop experimental designs. However, current models face the problem of limited generalizability. This is due to batch effects caused by differences in experimental design, animal subjects, and recording platforms. These confounding factors often lead to overfitting, reducing the robustness and practical utility of the models across various experimental scenarios. Previous studies have not rigorously evaluated how well the models generalize to new animals or stimulus conditions, creating a significant gap in the field. To solve this issue, we present a comprehensive experimental protocol that explicitly evaluates model performance on unseen animals and stimulus types. Additionally, we propose a model-agnostic adversarial training strategy. In this strategy, a discriminator network is used to eliminate batch-related information from the learned representations. The adversarial framework forces the representation model to focus on the intrinsic properties of neurons, thereby enhancing generalizability. Our approach is compatible with all major single-neuron representation models and significantly improves model robustness. This work emphasizes the importance of generalization in single-neuron representation models and offers an effective solution, paving the way for the practical application of computational models in vivo. It also shows potential for building unified atlases based on single-neuron in vivo activity.

Poster
Consistent Paths Lead to Truth: Self-Rewarding Reinforcement Learning for LLM Reasoning

Kongcheng Zhang, QI YAO, Shunyu Liu, Yingjie Wang, Baisheng Lai, Jieping Ye, Mingli Song, Dacheng Tao

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Recent advances of Reinforcement Learning (RL) have highlighted its potential in complex reasoning tasks, yet effective training often relies on external supervision, which limits the broader applicability. In this work, we propose a novel self-rewarding reinforcement learning framework to enhance Large Language Model (LLM) reasoning by leveraging the consistency of intermediate reasoning states across different reasoning trajectories. Our key insight is that correct responses often exhibit consistent trajectory patterns in terms of model likelihood: their intermediate reasoning states tend to converge toward their own final answers (*high consistency*) with minimal deviation toward other candidates (*low volatility*). Inspired by this observation, we introduce CoVo, an intrinsic reward mechanism that integrates ***Co***nsistency and ***Vo***latility via a robust vector-space aggregation strategy, complemented by a curiosity bonus to promote diverse exploration. CoVo enables LLMs to perform RL in a self-rewarding manner, offering a scalable pathway for learning to reason without external supervision. Extensive experiments on diverse reasoning benchmarks show that CoVo achieves performance comparable to or even surpassing supervised RL. Our code is available at https://github.com/sastpg/CoVo.

Poster
BrainOmni: A Brain Foundation Model for Unified EEG and MEG Signals

Qinfan Xiao, Ziyun Cui, Chi Zhang, Siqi Chen, Wen Wu, Andrew Thwaites, Alexandra Woolgar, Bowen Zhou, Chao Zhang

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Electroencephalography (EEG) and magnetoencephalography (MEG) measure neural activity non-invasively by capturing electromagnetic fields generated by dendritic currents. Although rooted in the same biophysics, EEG and MEG exhibit distinct signal patterns, further complicated by variations in sensor configurations across modalities and recording devices. Existing approaches typically rely on separate, modality- and dataset-specific models, which limits the performance and cross-domain scalability. This paper proposes BrainOmni, the first brain foundation model that generalises across heterogeneous EEG and MEG recordings. To unify diverse data sources, we introduce BrainTokenizer, the first tokeniser that quantises spatiotemporal brain activity into discrete representations. Central to BrainTokenizer is a novel Sensor Encoder that encodes sensor properties such as spatial layout, orientation, and type, enabling compatibility across devices and modalities. Building upon the discrete representations, BrainOmni learns unified semantic embeddings of brain signals by self-supervised pretraining. To the best of our knowledge, it is the first foundation model to support both EEG and MEG signals, as well as the first to incorporate large-scale MEG pretraining. A total of 1,997 hours of EEG and 656 hours of MEG data are curated and standardised from publicly available sources for pretraining. Experiments show that BrainOmni outperforms both existing foundation models and state-of-the-art task-specific models on a range of downstream tasks. It also demonstrates strong generalisation to unseen EEG and MEG devices. Further analysis reveals that joint EEG-MEG (EMEG) training yields consistent improvements across both modalities. Code and checkpoints are publicly available at https://github.com/OpenTSLab/BrainOmni

Poster
Is Limited Participant Diversity Impeding EEG-based Machine Learning?

Philipp Bomatter, Henry Gouk

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The application of machine learning (ML) to electroencephalography (EEG) has great potential to advance both neuroscientific research and clinical applications. However, the generalisability and robustness of EEG-based ML models often hinge on the amount and diversity of training data. It is common practice to split EEG recordings into small segments, thereby increasing the number of samples substantially compared to the number of individual recordings or participants. We conceptualise this as a multi-level data generation process and investigate the scaling behaviour of model performance with respect to the overall sample size and the participant diversity through large-scale empirical studies. We then use the same framework to investigate the effectiveness of different ML strategies designed to address limited data problems: data augmentations and self-supervised learning. Our findings show that model performance scaling can be severely constrained by participant distribution shifts and provide actionable guidance for data collection and ML research. The code for our experiments is publicly available online.

Poster
Understanding Differential Transformer Unchains Pretrained Self-Attentions

Chaerin Kong, Jiho Jang, Nojun Kwak

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Differential Transformer has recently gained significant attention for its impressive empirical performance, often attributed to its ability to perform noise canceled attention. However, precisely how differential attention achieves its empirical benefits remains poorly understood. Moreover, Differential Transformer architecture demands large-scale training from scratch, hindering utilization of open pretrained weights. In this work, we conduct an in-depth investigation of Differential Transformer, uncovering three key factors behind its success: (1) enhanced expressivity via negative attention, (2) reduced redundancy among attention heads, and (3) improved learning dynamics. Based on these findings, we propose DEX, a novel method to efficiently integrate the advantages of differential attention into pretrained language models. By reusing the softmax attention scores and adding a lightweight differential operation on the output value matrix, DEX effectively incorporates the key advantages of differential attention while remaining lightweight in both training and inference. Evaluations confirm that DEX substantially improves the pretrained LLMs across diverse benchmarks, achieving significant performance gains with minimal adaptation data (< 0.01%).

Poster
Robust Minimax Boosting with Performance Guarantees

Santiago Mazuelas, Veronica Alvarez

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Boosting methods often achieve excellent classification accuracy, but can experience notable performance degradation in the presence of label noise. Existing robust methods for boosting provide theoretical robustness guarantees for certain types of label noise, and can exhibit only moderate performance degradation. However, previous theoretical results do not account for realistic types of noise and finite training sizes, and existing robust methods can provide unsatisfactory accuracies, even without noise. This paper presents methods for robust minimax boosting (RMBoost) that minimize worst-case error probabilities and are robust to general types of label noise. In addition, we provide finite-sample performance guarantees for RMBoost with respect to the error obtained without noise and with respect to the best possible error (Bayes risk). The experimental results corroborate that RMBoost is not only resilient to label noise but can also provide strong classification accuracy.

Poster
Enhancing the Outcome Reward-based RL Training of MLLMs with Self-Consistency Sampling

Jiahao Wang, Weiye Xu, Aijun Yang, Wengang Zhou, Lewei Lu, Houqiang Li, Xiaohua Wang, Jinguo Zhu

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Outcome‑reward reinforcement learning (RL) is a common—and increasingly significant—way to refine the step‑by‑step reasoning of multimodal large language models (MLLMs). In the multiple‑choice setting—a dominant format for multimodal reasoning benchmarks—the paradigm faces a significant yet often overlooked obstacle: unfaithful trajectories that guess the correct option after a faulty chain of thought receive the same reward as genuine reasoning, which is a flaw that cannot be ignored. We propose Self‑Consistency Sampling (SCS) to correct this issue. For each question, SCS (i) introduces small visual perturbations and (ii) performs repeated truncation‑and‑resampling of a reference trajectory; agreement among the resulting trajectories yields a differentiable consistency score that down‑weights unreliable traces during policy updates. Plugging SCS into RLOO, GRPO, REINFORCE++ series improves accuracy by up to 7.7 percentage points on six multimodal benchmarks with negligible extra computation, offering a simple, general remedy for outcome‑reward RL in MLLMs.

Poster
PCA++: How Uniformity Induces Robustness to Background Noise in Contrastive Learning

Mingqi Wu, Qiang Sun, Archer Y. Yang

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High-dimensional data often conceal low-dimensional signals beneath structured background noise, limiting standard PCA. Motivated by contrastive learning, we address the problem of recovering shared signal subspaces from positive pairs--paired observations sharing the same signal but differing in background. Our baseline, PCA+, uses alignment-only contrastive learning and succeeds when background variation is mild, but fails under strong noise or high-dimensional regimes. To address this, we introduce PCA++, a hard uniformity-constrained contrastive PCA that enforces identity covariance on projected features. PCA++ has a closed-form solution via a generalized eigenproblem, remains stable in high dimensions, and provably regularizes against background interference. We provide exact high-dimensional asymptotics in both fixed-aspect-ratio and growing-spike regimes, showing uniformity’s role in robust signal recovery. Empirically, PCA++ outperforms standard PCA and alignment-only PCA+ on simulations, corrupted-MNIST, and single-cell transcriptomics, reliably recovering condition-invariant structure. More broadly, we clarify uniformity’s role in contrastive learning—showing that explicit feature dispersion defends against structured noise and enhances robustness.

Spotlight
Spend Wisely: Maximizing Post-Training Gains in Iterative Synthetic Data Bootstrapping

Pu Yang, Yunzhen Feng, Ziyuan Chen, Yuhang Wu, Zhuoyuan Li

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Modern foundation models often undergo iterative ``bootstrapping'' in their post-training phase: a model generates synthetic data, an external verifier filters out low-quality samples, and the high-quality subset is used for further fine-tuning. Over multiple iterations, the model performance improves, raising a crucial question: How should the total budget for generation and training be allocated across iterations to maximize final performance? In this work, we develop a theoretical framework for analyzing budget allocation strategies. Specifically, we show that constant policies fail to converge with high probability, while increasing policies---particularly exponential growth policies---exhibit significant theoretical advantages. Experiments on image denoising with diffusion probabilistic models and math reasoning with large language models show that both exponential and polynomial growth policies consistently outperform constant policies, with exponential policies often providing more stable performance.

Spotlight
Adv-SSL: Adversarial Self-Supervised Representation Learning with Theoretical Guarantees

Chenguang Duan, Yuling Jiao, Huazhen Lin, Wensen Ma, Jerry Zhijian Yang

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Learning transferable data representations from abundant unlabeled data remains a central challenge in machine learning. Although numerous self-supervised learning methods have been proposed to address this challenge, a significant class of these approaches aligns the covariance or correlation matrix with the identity matrix. Despite impressive performance across various downstream tasks, these methods often suffer from biased sample risk, leading to substantial optimization shifts in mini-batch settings and complicating theoretical analysis. In this paper, we introduce a novel \underline{\bf Adv}ersarial \underline{\bf S}elf-\underline{\bf S}upervised Representation \underline{\bf L}earning (Adv-SSL) for unbiased transfer learning with no additional cost compared to its biased counterparts. Our approach not only outperforms the existing methods across multiple benchmark datasets but is also supported by comprehensive end-to-end theoretical guarantees. Our analysis reveals that the minimax optimization in Adv-SSL encourages representations to form well-separated clusters in the embedding space, provided there is sufficient upstream unlabeled data. As a result, our method achieves strong classification performance even with limited downstream labels, shedding new light on few-shot learning.

Poster
LookWhere? Efficient Visual Recognition by Learning Where to Look and What to See from Self-Supervision

Anthony Fuller, Yousef Yassin, Junfeng Wen, Tarek Ibrahim, Daniel Kyrollos, James R Green, Evan Shelhamer

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Vision transformers are ever larger, more accurate, and more expensive to compute. At high resolution, the expense is even more extreme as the number of tokens grows quadratically in the image size. We turn to adaptive computation to cope with this cost by learning to predict where to compute. Our LookWhere method divides the computation between a low-resolution selector and a high-resolution extractor without ever processing the full high-resolution input. We jointly pretrain the selector and extractor without task supervision by distillation from a self-supervised teacher, in effect learning where and what to compute at the same time. Unlike prior token reduction methods, which pay to save by pruning already-computed tokens, and prior token selection methods, which require complex and expensive per-task optimization, LookWhere economically and accurately selects and extracts transferrable representations of images. We show that LookWhere excels at sparse recognition on high-resolution inputs (Traffic Signs), maintaining accuracy while reducing FLOPs by 17x and time by 4x, and standard recognition tasks that are global (ImageNet classification) and local (ADE20K segmentation), improving accuracy while reducing time by 1.36x.

Poster
SeRL: Self-play Reinforcement Learning for Large Language Models with Limited Data

Wenkai Fang, Shunyu Liu, Yang Zhou, Kongcheng Zhang, Tongya Zheng, Kaixuan Chen, Mingli Song, Dacheng Tao

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Recent advances have demonstrated the effectiveness of Reinforcement Learning (RL) in improving the reasoning capabilities of Large Language Models (LLMs). However, existing works inevitably rely on high-quality instructions and verifiable rewards for effective training, both of which are often difficult to obtain in specialized domains. In this paper, we propose Self-play Reinforcement Learning (SeRL) to bootstrap LLM training with limited initial data. Specifically, SeRL comprises two complementary modules: self-instruction and self-rewarding. The former module generates additional instructions based on the available data at each training step, employing comprehensive online filtering strategies to ensure instruction quality, diversity, and difficulty. The latter module introduces a simple yet effective majority-voting mechanism to estimate response rewards for additional instructions, eliminating the need for external annotations. Finally, SeRL performs conventional RL based on the generated data, facilitating iterative self-play learning. Extensive experiments on various reasoning benchmarks and across different LLM backbones demonstrate that the proposed SeRL yields results superior to its counterparts and achieves performance on par with those obtained by high-quality data with verifiable rewards. Our code is available at https://github.com/wantbook-book/SeRL.

Poster
Understand Before You Generate: Self-Guided Training for Autoregressive Image Generation

Xiaoyu Yue, Zidong Wang, Yuqing Wang, Wenlong Zhang, Xihui Liu, Wanli Ouyang, Lei Bai, Luping Zhou

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Recent studies have demonstrated the importance of high-quality visual representations in image generation and have highlighted the limitations of generative models in image understanding. As a generative paradigm originally designed for natural language, autoregressive models face similar challenges. In this work, we present the first systematic investigation into the mechanisms of applying the next-token prediction paradigm to the visual domain. We identify three key properties that hinder the learning of high-level visual semantics: local and conditional dependence, inter-step semantic inconsistency, and spatial invariance deficiency. We show that these issues can be effectively addressed by introducing self-supervised objectives during training, leading to a novel training framework, Self-guided Training for AutoRegressive models (ST-AR). Without relying on pre-trained representation models, ST-AR significantly enhances the image understanding ability of autoregressive models and leads to improved generation quality. Specifically, ST-AR brings approximately 42% FID improvement for LlamaGen-L and 49% FID improvement for LlamaGen-XL, while maintaining the same sampling strategy.

Poster
Neurons as Detectors of Coherent Sets in Sensory Dynamics

Joshua L. Pughe-Sanford, Xuehao Ding, Jason J Moore, Anirvan M. Sengupta, Charles Epstein, Philip Greengard, Dmitri Chklovskii

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We model sensory streams as observations from high-dimensional stochastic dynamical systems and conceptualize sensory neurons as self-supervised learners of compact representations of such dynamics. From prior experience, neurons learn {\it coherent sets}—regions of stimulus state space whose trajectories evolve cohesively over finite times—and assign membership indices to new stimuli. Coherent sets are identified via spectral clustering of the {\it stochastic Koopman operator (SKO)}, where the sign pattern of a subdominant singular function partitions the state space into minimally coupled regions. For multivariate Ornstein–Uhlenbeck processes, this singular function reduces to a linear projection onto the dominant singular vector of the whitened state-transition matrix. Encoding this singular vector as a receptive field enables neurons to compute membership indices via the projection sign in a biologically plausible manner. Each neuron detects either a {\it predictive} coherent set (stimuli with common futures) or a {\it retrospective} coherent set (stimuli with common pasts), suggesting a functional dichotomy among neurons. Since neurons lack access to explicit dynamical equations, the requisite singular vectors must be estimated directly from data, for example, via past–future canonical correlation analysis on lag-vector representations—an approach that naturally extends to nonlinear dynamics. This framework provides a novel account of neuronal temporal filtering, the ubiquity of rectification in neural responses, and known functional dichotomies. Coherent-set clustering thus emerges as a fundamental computation underlying sensory processing and transferable to bio-inspired artificial systems.

Poster
Self-Verification Provably Prevents Model Collapse in Recursive Synthetic Training

Shi Fu, Yingjie Wang, Yuzhu Chen, Li Shen, Dacheng Tao

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Large generative models are increasingly trained on synthetic data from earlier generations, raising concerns about *model collapse*, a progressive performance decline consistently observed in empirical studies. However, theoretical understanding of recursive training dynamics and their failure modes remains limited. In this work, we theoretically show that recursive training inherently leads to exponential error growth unless mitigated by sufficient real data. Addressing the growing scarcity of real data, we introduce a self-verification mechanism enabling models to filter their outputs based on internal confidence scores without external validation. Through rigorous analysis, we derive finite-sample error bounds demonstrating that self-verification alone can prevent collapse, even in fully synthetic training regimes. Our theoretical framework extends to large language models (LLMs), characterizing the conditions under which recursive training can maintain stability without performance degradation.

Poster
A multiscale analysis of mean-field transformers in the moderate interaction regime

Giuseppe Bruno, Federico Pasqualotto, Andrea Agazzi

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In this paper, we study the evolution of tokens through the depth of encoder-only transformer models at inference time by modeling them as a system of particles interacting in a mean-field way and studying the corresponding dynamics. More specifically, we consider this problem in the moderate interaction regime, where the number $N$ of tokens is large and the inverse temperature parameter $\beta$ of the model scales together with $N$. In this regime, the dynamics of the system displays a multiscale behavior: a fast phase, where the token empirical measure collapses on a low-dimensional space, an intermediate phase, where the measure further collapses into clusters, and a slow one, where such clusters sequentially merge into a single one. We provide a rigorous characterization of the limiting dynamics in each of these phases and prove convergence in the above mentioned limit, exemplifying our results with some simulations.

Oral
Language Models can Self-Improve at State-Value Estimation for Better Search

Ethan Mendes, Alan Ritter

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Collecting ground-truth rewards or human demonstrations for multi-step reasoning tasks is often prohibitively expensive, especially in interactive domains such as web tasks. We introduce Self-Taught Lookahead (STL), a reward-free framework that improves language model–based value functions by reasoning explicitly about state transitions. STL can be viewed as a chain-of-thought analogue of the value iteration algorithm: instead of regressing directly on numeric values, a value LLM is trained to simulate a step of lookahead in natural language—predicting the next action, resulting state, and rationale for its value. This process refines value estimates without any labeled data. The self-supervised procedure yields more accurate state-value predictions, which in turn enable lightweight search algorithms to expand fewer states while maintaining strong performance. Empirically, STL-trained value models built on moderately sized (8B-parameter) open-weight LLMs boost web agent success rates by over 39%, achieving performance comparable to proprietary models. STL also generalizes to multi-hop question answering and math puzzles. Overall, STL enables small open-source models to guide efficient search, reducing inference costs by integrating explicit reasoning with value learning.

Spotlight
Tabula: A Tabular Self-Supervised Foundation Model for Single-Cell Transcriptomics

Jiayuan Ding, Jianhui Lin, Shiyu Jiang, Yixin Wang, Ziyang Miao, Zhaoyu Fang, Jiliang Tang, Min Li, Xiaojie Qiu

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Foundation models (FMs) have shown great promise in single-cell genomics, yet current approaches, such as scGPT, Geneformer, and scFoundation, rely on centralized training and language modeling objectives that overlook the tabular nature of single-cell data and raise significant privacy concerns. We present TABULA, a foundation model designed for single-cell transcriptomics, which integrates a novel tabular modeling objective and federated learning framework to enable privacy-preserving pretraining across decentralized datasets. TABULA directly models the cell-by-gene expression matrix through column-wise gene reconstruction and row-wise cell contrastive learning, capturing both gene-level relationships and cell-level heterogeneity without imposing artificial gene sequence order. Extensive experiments demonstrate the effectiveness of TABULA: despite using only half the pretraining data, TABULA achieves state-of-the-art performance across key tasks, including gene imputation, perturbation prediction, cell type annotation, and multi-omics integration. It is important to note that as public single-cell datasets continue to grow, TABULA provides a scalable and privacy-aware foundation that not only validates the feasibility of federated tabular modeling but also establishes a generalizable framework for training future models under similar privacy-preserving settings.

Poster
Soft Task-Aware Routing of Experts for Equivariant Representation Learning

Jaebyeong Jeon, Hyeonseo Jang, Jy-yong Sohn, Kibok Lee

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Equivariant representation learning aims to capture variations induced by input transformations in the representation space, whereas invariant representation learning encodes semantic information by disregarding such transformations. Recent studies have shown that jointly learning both types of representations is often beneficial for downstream tasks, typically by employing separate projection heads. However, this design overlooks information shared between invariant and equivariant learning, which leads to redundant feature learning and inefficient use of model capacity. To address this, we introduce \textbf{S}oft \textbf{T}ask-\textbf{A}ware \textbf{R}outing (STAR), a routing strategy for projection heads that models them as experts. STAR induces the experts to specialize in capturing either shared or task-specific information, thereby reducing redundant feature learning. We validate this effect by observing lower canonical correlations between invariant and equivariant embeddings. Experimental results show consistent improvements across diverse transfer learning tasks. The code is available at \url{https://github.com/YonseiML/star}.

Poster
Training-free Detection of AI-generated images via Cropping Robustness

Sungik Choi, Hankook Lee, Moontae Lee

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AI-generated image detection has become crucial with the rapid advancement of vision-generative models. Instead of training detectors tailored to specific datasets, we study a training-free approach leveraging self-supervised models without requiring prior data knowledge. These models, pre-trained with augmentations like $\texttt{RandomResizedCrop}$, learn to produce consistent representations across varying resolutions. Motivated by this, we propose $\textbf{WaRPAD},$ a training-free AI-generated image detection algorithm based on self-supervised models. Since neighborhood pixel differences in images are highly sensitive to resizing operations, WaRPAD first defines a base score function that quantifies the sensitivity of image embeddings to perturbations along high-frequency directions extracted via Haar wavelet decomposition. To simulate robustness against cropping augmentation, we rescale each image to a multiple of the model’s input size, divide it into smaller patches, and compute the base score for each patch. The final detection score is then obtained by averaging the scores across all patches. We validate WaRPAD on real datasets of diverse resolutions and domains, and images generated by 23 different generative models. Our method consistently achieves competitive performance and demonstrates strong robustness to test-time corruptions. Furthermore, as invariance to $\texttt{RandomResizedCrop}$ is a common training scheme across self-supervised models, we show that WaRPAD is applicable across self-supervised models.

Poster