NeurIPS 2025 Papers

Conference on Neural Information Processing Systems

Decision breakdown

5,812papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    931.6%
  • Spotlight
    73912.7%
  • Poster
    4,98085.7%

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Topic: Diffusion Models · 694 papers · Reset filters

NeuralPLexer3: Accurate Biomolecular Complex Structure Prediction with Flow Models

Zhuoran Qiao, Feizhi Ding, Thomas Dresselhaus, Mia A. Rosenfeld, Xiaotian Han, Owen Lewis Howell, Aniketh Iyengar, Stephen Opalenski, Anders S Christensen, Sai Krishna Sirumalla, Fred Manby, Thomas Miller, Matthew Welborn

Expand abstract

Biomolecular structure determination is essential to a mechanistic understanding of diseases and the development of novel therapeutics. Machine-learning-based structure prediction methods have made significant advancements by computationally predicting protein and bioassembly structures from sequences and molecular topology alone. Despite substantial progress in the field, challenges remain to deliver structure prediction models to real-world drug discovery. Here, we present NeuralPLexer3 -- a physics-inspired flow-based generative model that achieves state-of-the-art prediction accuracy on key biomolecular interaction types and improves training and sampling efficiency compared to its predecessors and alternative methodologies. Examined through existing and new benchmarks, NeuralPLexer3 excels in areas crucial to structure-based drug design, including blind docking, physical validity, and ligand-induced protein conformational changes.

Poster
A Data-Driven Prism: Multi-View Source Separation with Diffusion Model Priors

Sebastian Wagner-Carena, Aizhan Akhmetzhanova, Sydney Erickson

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In the natural sciences, a common challenge is to disentangle distinct, unknown sources from observations. Examples of this source separation task include deblending galaxies in a crowded field, distinguishing the activity of individual neurons from overlapping signals, and separating seismic events from the ambient background. Traditional analyses often rely on simplified source models that fail to accurately reproduce the data. Recent advances have shown that diffusion models can directly learn complex prior distributions from noisy, incomplete data. In this work, we show that diffusion models can solve the source separation problem without explicit assumptions about the source. Our method relies only on multiple views, or the property that different sets of observations contain different linear transformations of the unknown sources. We show that our method succeeds even when no source is individually observed and the observations are noisy, incomplete, and vary in resolution. The learned diffusion models enable us to sample from the source priors, evaluate the probability of candidate sources, and draw from the joint posterior of our sources given an observation. We demonstrate the effectiveness of our method on a range of synthetic problems as well as real-world galaxy observations.

Poster
Video Diffusion Models Excel at Tracking Similar-Looking Objects Without Supervision

Chenshuang Zhang, Kang Zhang, Joon Son Chung, In So Kweon, Junmo Kim, Chengzhi Mao

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Distinguishing visually similar objects by their motion remains a critical challenge in computer vision. Although supervised trackers show promise, contemporary self-supervised trackers struggle when visual cues become ambiguous, limiting their scalability and generalization without extensive labeled data. We find that pre-trained video diffusion models inherently learn motion representations suitable for tracking without task-specific training. This ability arises because their denoising process isolates motion in early, high-noise stages, distinct from later appearance refinement. Capitalizing on this discovery, our self-supervised tracker significantly improves performance in distinguishing visually similar objects, an underexplored failure point for existing methods. Our method achieves up to a 6-point improvement over recent self-supervised approaches on established benchmarks and our newly introduced tests focused on tracking visually similar items. Visualizations confirm that these diffusion-derived motion representations enable robust tracking of even identical objects across challenging viewpoint changes and deformations.

Poster
A Technical Report on “Erasing the Invisible”: The 2024 NeurIPS Competition on Stress Testing Image Watermarks

Mucong Ding, Bang An, Tahseen Rabbani, Chenghao Deng, Anirudh Satheesh, Souradip Chakraborty, Mehrdad Saberi, Yuxin Wen, Kyle Rui Sang, Aakriti Agrawal, Xuandong Zhao, Mo Zhou, Mary-Anne Hartley, Lei Li, Yu-Xiang Wang, Vishal M. Patel, Soheil Feizi, Tom Goldstein, Furong Huang

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AI-generated images have become pervasive, raising critical concerns around content authenticity, intellectual property, and the spread of misinformation. Invisible watermarks offer a promising solution for identifying AI-generated images, preserving content provenance without degrading visual quality. However, their real-world robustness remains uncertain due to the lack of standardized evaluation protocols and large-scale stress testing. To bridge this gap, we organized “Erasing the Invisible,” a NeurIPS 2024 competition and newly established benchmark designed to systematically stress testing the resilience of watermarking techniques. The competition introduced two attack tracks—Black-box and Beige-box—that simulate practical scenarios with varying levels of attacker knowledge on watermarks, providing a comprehensive assessment of watermark robustness. The competition attracted significant global participation, with 2,722 submissions from 298 teams. Through a rigorous evaluation pipeline featuring real-time feedback and human-verified final rankings, participants developed and demonstrated new attack strategies that revealed critical vulnerabilities in state-of-the-art watermarking methods. On average, the top-5 teams in both tracks could remove watermarks from $\geq$ 89% of the images while preserving high visual quality, setting strong baselines for future research on watermark attacks and defenses. To support continued progress in this field, we summarize the insights and lessons learned from this competition in this paper, and release the benchmark dataset, evaluation toolkit, and competition results. “Erasing the Invisible” establishes a valuable open resource for advancing more robust watermarking techniques and strengthening content provenance in the era of generative AI.

Poster
Failure Prediction at Runtime for Generative Robot Policies

Ralf Römer, Adrian Kobras, Luca Worbis, Angela P. Schoellig

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Imitation learning (IL) with generative models, such as diffusion and flow matching, has enabled robots to perform complex, long-horizon tasks. However, distribution shifts from unseen environments or compounding action errors can still cause unpredictable and unsafe behavior, leading to task failure. Therefore, early failure prediction during runtime is essential for deploying robots in human-centered and safety-critical environments. We propose FIPER, a general framework for Failure Prediction at Runtime for generative IL policies that does not require failure data. FIPER identifies two key indicators of impending failure: (i) out-of-distribution (OOD) observations detected via random network distillation in the policy’s embedding space, and (ii) high uncertainty in generated actions measured by a novel action-chunk entropy score. Both failure prediction scores are calibrated using a small set of successful rollouts via conformal prediction. A failure alarm is triggered when both indicators, aggregated over short time windows, exceed their thresholds. We evaluate FIPER across five simulation and real-world environments involving diverse failure modes. Our results demonstrate that FIPER better distinguishes actual failures from benign OOD situations and predicts failures more accurately and earlier than existing methods. We thus consider this work an important step towards more interpretable and safer generative robot policies. Code, data, and videos are available at [tum-lsy.github.io/fiper_website](https://tum-lsy.github.io/fiper_website).

Poster
Event-Guided Consistent Video Enhancement with Modality-Adaptive Diffusion Pipeline

Kanghao Chen, Zixin Zhang, Guoqiang Liang, Lutao Jiang, Zeyu Wang, Ying-Cong Chen

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Recent advancements in low-light video enhancement (LLVE) have increasingly leveraged both RGB and event cameras to improve video quality under challenging conditions. However, existing approaches share two key drawbacks. First, they are tuned for steady low-light scenes, so their performance drops when illumination varies. Second, they assume every sensing modality is always available, while real systems may lose or corrupt one of them. These limitations make the methods brittle in dynamic, real-world settings. In this paper, we propose EVDiffuser, a novel framework for consistent LLVE that integrates RGB and event data through a modality-adaptive diffusion pipeline. By harnessing the powerful priors of video diffusion models, EVDiffuser enables consistent video enhancement and generalization to diverse scenarios under varying illumination, where RGB or events may even be absent. Specifically, we first design a modality-agnostic conditioning mechanism based on a diffusion pipeline by treating the two modalities as optional conditions, which is fine-tuned using augmented and integrated datasets. Furthermore, we introduce a modality-adaptive guidance rescaling that dynamically adjusts the contribution of each modality according to sensor-specific characteristics. Additionally, we establish a benchmark that accounts for varying illumination and diverse real-world scenarios, facilitating future research on consistent event-guided LLVE. Our experiments demonstrate state-of-the-art performance across challenging scenarios (i.e., varying illumination) and sensor-based settings (e.g., event-only, RGB-only), highlighting the generalization of our framework.

Poster
Why Diffusion Models Don’t Memorize: The Role of Implicit Dynamical Regularization in Training

Tony Bonnaire, Raphaël Urfin, Giulio Biroli, Marc Mezard

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Diffusion models have achieved remarkable success across a wide range of generative tasks. A key challenge is understanding the mechanisms that prevent their memorization of training data and allow generalization. In this work, we investigate the role of the training dynamics in the transition from generalization to memorization. Through extensive experiments and theoretical analysis, we identify two distinct timescales: an early time $\tau_\mathrm{gen}$ at which models begin to generate high-quality samples, and a later time $\tau_\mathrm{mem}$ beyond which memorization emerges. Crucially, we find that $\tau_\mathrm{mem}$ increases linearly with the training set size $n$, while $\tau_\mathrm{gen}$ remains constant. This creates a growing window of training times with $n$ where models generalize effectively, despite showing strong memorization if training continues beyond it. It is only when $n$ becomes larger than a model-dependent threshold that overfitting disappears at infinite training times. These findings reveal a form of implicit dynamical regularization in the training dynamics, which allow to avoid memorization even in highly overparameterized settings. Our results are supported by numerical experiments with standard U-Net architectures on realistic and synthetic datasets, and by a theoretical analysis using a tractable random features model studied in the high-dimensional limit.

Oral
Dynamic View Synthesis as an Inverse Problem

Hidir Yesiltepe, Pinar Yanardag

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In this work, we address dynamic view synthesis from monocular videos as an inverse problem in a training-free setting. By redesigning the noise initialization phase of a pre-trained video diffusion model, we enable high-fidelity dynamic view synthesis without any weight updates or auxiliary modules. We begin by identifying a fundamental obstacle to deterministic inversion arising from zero-terminal signal-to-noise ratio (SNR) schedules and resolve it by introducing a novel noise representation, termed K-order Recursive Noise Representation. We derive a closed form expression for this representation, enabling precise and efficient alignment between the VAE-encoded and the DDIM inverted latents. To synthesize newly visible regions resulting from camera motion, we introduce Stochastic Latent Modulation, which performs visibility aware sampling over the latent space to complete occluded regions. Comprehensive experiments demonstrate that dynamic view synthesis can be effectively performed through structured latent manipulation in the noise initialization phase.

Poster
Understanding Representation Dynamics of Diffusion Models via Low-Dimensional Modeling

Xiao Li, Zekai Zhang, Xiang Li, Siyi Chen, Zhihui Zhu, Peng Wang, Qing Qu

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Diffusion models, though originally designed for generative tasks, have demonstrated impressive self-supervised representation learning capabilities. A particularly intriguing phenomenon in these models is the emergence of unimodal representation dynamics, where the quality of learned features peaks at an intermediate noise level. In this work, we conduct a comprehensive theoretical and empirical investigation of this phenomenon. Leveraging the inherent low-dimensionality structure of image data, we theoretically demonstrate that the unimodal dynamic emerges when the diffusion model successfully captures the underlying data distribution. The unimodality arises from an interplay between denoising strength and class confidence across noise scales. Empirically, we further show that, in classification tasks, the presence of unimodal dynamics reliably reflects the diffusion model’s generalization: it emerges when the model generate novel images and gradually transitions to a monotonically decreasing curve as the model begins to memorize the training data.

Poster
Personalized Image Editing in Text-to-Image Diffusion Models via Collaborative Direct Preference Optimization

Connor Dunlop, Matthew Zheng, Kavana Venkatesh, Pinar Yanardag

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Text-to-image (T2I) diffusion models have made remarkable strides in generating and editing high-fidelity images from text. Yet, these models remain fundamentally generic, failing to adapt to the nuanced aesthetic preferences of individual users. In this work, we present the first framework for personalized image editing in diffusion models, introducing Collaborative Direct Preference Optimization (C-DPO), a novel method that aligns image edits with user-specific preferences while leveraging collaborative signals from like-minded individuals. Our approach encodes each user as a node in a dynamic preference graph and learns embeddings via a lightweight graph neural network, enabling information sharing across users with overlapping visual tastes. We enhance a diffusion model's editing capabilities by integrating these personalized embeddings into a novel DPO objective, which jointly optimizes for individual alignment and neighborhood coherence. Comprehensive experiments, including user studies and quantitative benchmarks, demonstrate that our method consistently outperforms baselines in generating edits that are aligned with user preferences.

Poster
FlashMo: Geometric Interpolants and Frequency-Aware Sparsity for Scalable Efficient Motion Generation

Zeyu Zhang, Yiran Wang, Danning Li, Dong Gong, Ian Reid, Richard Hartley

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Diffusion models have recently advanced 3D human motion generation by producing smoother and more realistic sequences from natural language. However, existing approaches face two major challenges: high computational cost during training and inference, and limited scalability due to reliance on U-Net inductive bias. To address these challenges, we propose **FlashMo**, a frequency-aware sparse motion diffusion model that prunes low-frequency tokens to enhance efficiency without custom kernel design. We further introduce *MotionSiT*, a scalable diffusion transformer based on a joint-temporal factorized interpolant with Lie group geodesics over $\mathrm{SO}(3)$ manifolds, enabling principled generation of joint rotations. Extensive experiments on the large-scale MotionHub V2 dataset and standard benchmarks including HumanML3D and KIT-ML demonstrate that our method significantly outperforms previous approaches in motion quality, efficiency, and scalability. Compared to the state-of-the-art 1-step distillation baseline, FlashMo reduces **12.9%** inference time and FID by **34.1%**. Project website: https://steve-zeyu-zhang.github.io/FlashMo.

Poster
CLEAR: Conv-Like Linearization Revs Pre-Trained Diffusion Transformers Up

Songhua Liu, Zhenxiong Tan, Xinchao Wang

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Diffusion Transformers (DiT) have become a leading architecture in image generation. However, the quadratic complexity of attention mechanisms, which are responsible for modeling token-wise relationships, results in significant latency when generating high-resolution images. To address this issue, we aim at a linear attention mechanism in this paper that reduces the complexity of pre-trained DiTs to linear. We begin our exploration with a comprehensive summary of existing efficient attention mechanisms and identify four key factors crucial for successful linearization of pre-trained DiTs: locality, formulation consistency, high-rank attention maps, and feature integrity. Based on these insights, we introduce a convolution-like local attention strategy termed CLEAR, which limits feature interactions to a local window around each query token, and thus achieves linear complexity. Our experiments indicate that, by fine-tuning the attention layer on merely 10K self-generated samples for 10K iterations, we can effectively transfer knowledge from a pre-trained DiT to a student model with linear complexity, yielding results comparable to the teacher model. Simultaneously, it reduces attention computations by 99.5% and accelerates generation by 6.3 times for generating 8K-resolution images. Furthermore, we investigate favorable properties in the distilled attention layers, such as zero-shot generalization across various models and plugins, and improved support for multi-GPU parallel inference. Models and codes will be available.

Poster
Partial Physics Informed Diffusion Model for Ocean Chlorophyll Concentration Reconstruction

Qianxun Xu, Zuchuan Li

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The integration of big data, physical laws, and machine learning algorithms has shown potential to improve the estimation and understanding of complex real-world systems. However, effectively incorporating physical laws with uncertainties into machine learning algorithms remains understudied. In this work, we bridge this gap by developing the Partial Physics Informed Diffusion Model (PPIDM), a novel framework that integrates known physical principles through a physics operator while reducing the impact of unknown dynamics by minimizing related discrepancies. We showcase PPIDM’s capabilities using ocean surface chlorophyll concentration data, which are influenced by both physical and biological processes, while the latter is poorly constrained. Experimental results reveal that PPIDM achieves substantially improved prediction accuracy and stability, significantly outperforming baseline methods that either neglect physics entirely or impose incomplete physical constraints under the assumption of completeness.

Poster
Information-Theoretic Discrete Diffusion

Moongyu Jeon, Sangwoo Shin, Dongjae Jeon, Albert No

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We present an information-theoretic framework for discrete diffusion models that yields principled estimators of log-likelihood using score-matching losses. Inspired by the I-MMSE identity for the Gaussian setup, we derive analogous results for the discrete setting. Specifically, we introduce the Information–Minimum Denoising Score Entropy (I-MDSE) relation, which links mutual information between data and its diffused version to the minimum denoising score entropy (DSE) loss. We extend this theory to masked diffusion and establish the Information–Minimum Denoising Cross-Entropy (I-MDCE) relation, connecting cross-entropy losses to mutual information in discrete masked processes. These results provide a time-integral decomposition of the log-likelihood of the data in terms of optimal score-based losses, showing that commonly used losses such as DSE and DCE are not merely variational bounds but tight and principled estimators of log-likelihood. The I-MDCE decomposition further enables practical extensions, including time-free formula, conditional likelihood estimation in prompt–response tasks, and coupled Monte Carlo estimation of likelihood ratios. Experiments on synthetic and real-world data confirm the accuracy, variance stability, and utility of our estimators. The code is publicly available at https://github.com/Dongjae0324/infodis.

Poster
In Silico Mapping of Visual Categorical Selectivity Across the Whole Brain

Ethan Hwang, Hossein Adeli, Wenxuan Guo, Andrew Luo, Nikolaus Kriegeskorte

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A fine-grained account of functional selectivity in the cortex is essential for understanding how visual information is processed and represented in the brain. Classical studies using designed experiments have identified multiple category-selective regions; however, these approaches rely on preconceived hypotheses about categories. Subsequent data-driven discovery methods have sought to address this limitation but are often limited by simple, typically linear encoding models. We propose an in silico approach for data-driven discovery of novel category-selectivity hypotheses based on an encoder–decoder transformer model. The architecture incorporates a brain-region to image-feature cross-attention mechanism, enabling nonlinear mappings between high-dimensional deep network features and semantic patterns encoded in the brain activity. We further introduce a method to characterize the selectivity of individual parcels by leveraging diffusion-based image generative models and large-scale datasets to synthesize and select images that maximally activate each parcel. Our approach reveals regions with complex, compositional selectivity involving diverse semantic concepts, which we validate in silico both within and across subjects. Using a brain encoder as a “digital twin” offers a powerful, data-driven framework for generating and testing hypotheses about visual selectivity in the human brain—hypotheses that can guide future fMRI experiments. Our code is available at: https://kriegeskorte-lab.github.io/in-silico-mapping-web/.

Poster
SyncHuman: Synchronizing 2D and 3D Generative Models for Single-view Human Reconstruction

Wenyue Chen, Peng Li, Wangguandong Zheng, Chengfeng Zhao, Mengfei Li, Yaolong Zhu, Zhiyang Dou, Ronggang Wang, Yuan Liu

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Photorealistic 3D full-body human reconstruction from a single image is a critical yet challenging task for applications in films and video games due to inherent ambiguities and severe self-occlusions. While recent approaches leverage SMPL estimation and SMPL-conditioned image generative models to hallucinate novel views, they suffer from inaccurate 3D priors estimated from SMPL meshes and have difficulty in handling difficult human poses and reconstructing fine details.In this paper, we propose SyncHuman, a novel framework that combines 2D multiview generative model and 3D native generative model for the first time, enabling high-quality clothed human mesh reconstruction from single-view images even under challenging human poses.Multiview generative model excels at capturing fine 2D details but struggles with structural consistency, whereas 3D native generative model generates coarse yet structurally consistent 3D shapes. By integrating the complementary strengths of these two approaches, we develop a more effective generation framework. Specifically, we first jointly fine-tune the multiview generative model and the 3D native generative model with proposed pixel-aligned 2D-3D synchronization attention to produce geometrically aligned 3D shapes and 2D multiview images. To further improve details, we introduce a feature injection mechanism that lifts fine details from 2D multiview images onto the aligned 3D shapes, enabling accurate and high-fidelity reconstruction.Extensive experiments demonstrate that SyncHuman achieves robust and photorealistic 3D human reconstruction, even for images with challenging poses. Our method outperforms baseline methods in geometric accuracy and visual fidelity, demonstrating a promising direction for future 3D generation models.

Poster
Transition Matching: Scalable and Flexible Generative Modeling

Neta Shaul, Uriel Singer, Itai Gat, Yaron Lipman

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Diffusion and flow matching models have significantly advanced media generation, yet their design space is well-explored, somewhat limiting further improvements. Concurrently, autoregressive (AR) models, particularly those generating continuous tokens, have emerged as a promising direction for unifying text and media generation, showing improved performance at scale. This paper introduces Transition Matching (TM), a novel discrete-time, continuous-state generative paradigm that unifies and advances both diffusion/flow models and continuous AR generation. TM decomposes complex generation tasks into simpler Markov transitions, allowing for expressive non-deterministic probability transition kernels and arbitrary non-continuous supervision processes, thereby unlocking new flexible design avenues. We explore these choices through three TM variants: (i) Difference Transition Matching (DTM), which generalizes flow matching to discrete-time by directly learning transition probabilities, yielding state-of-the-art image quality and text adherence. (ii) Autoregressive Transition Matching (ARTM) and (iii) Full History Transition Matching (FHTM) are partially and fully causal models, respectively, that generalize continuous AR methods. They achieve continuous causal AR generation quality comparable to non-causal approaches and potentially enable seamless integration with existing AR text generation techniques. Notably, FHTM is the first fully causal model to match or surpass the performance of flow-based methods on text-to-image task in continuous domains. We demonstrate these contributions through a rigorous large-scale comparison of TM variants and relevant baselines, maintaining a fixed architecture, training data, and hyperparameters.

Poster
STITCH-OPE: Trajectory Stitching with Guided Diffusion for Off-Policy Evaluation

Hossein Goli, Michael Gimelfarb, Nathan Samuel de Lara, Haruki Nishimura, Masha Itkina, Florian Shkurti

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Off-policy evaluation (OPE) estimates the performance of a target policy using offline data collected from a behavior policy, and is crucial in domains such as robotics or healthcare where direct interaction with the environment is costly or unsafe. Existing OPE methods are ineffective for high-dimensional, long-horizon problems, due to exponential blow-ups in variance from importance weighting or compounding errors from learned dynamics models. To address these challenges, we propose STITCH-OPE, a model-based generative framework that leverages denoising diffusion for long-horizon OPE in high-dimensional state and action spaces. Starting with a diffusion model pre-trained on the behavior data, STITCH-OPE generates synthetic trajectories from the target policy by guiding the denoising process using the score function of the target policy. STITCH-OPE proposes two technical innovations that make it advantageous for OPE: (1) prevents over-regularization by subtracting the score of the behavior policy during guidance, and (2) generates long-horizon trajectories by stitching partial trajectories together end-to-end. We provide a theoretical guarantee that under mild assumptions, these modifications result in an exponential reduction in variance versus long-horizon trajectory diffusion. Experiments on the D4RL and OpenAI Gym benchmarks show substantial improvement in mean squared error, correlation, and regret metrics compared to state-of-the-art OPE methods.

Spotlight
Posterior Sampling by Combining Diffusion Models with Annealed Langevin Dynamics

Zhiyang Xun, Shivam Gupta, Eric Price

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Given a noisy linear measurement $y = Ax + \xi$ of a distribution $p(x)$, and a good approximation to the prior $p(x)$, when can we sample from the posterior $p(x \mid y)$? Posterior sampling provides an accurate and fair framework for tasks such as inpainting, deblurring, and MRI reconstruction, and several heuristics attempt to approximate it. Unfortunately, approximate posterior sampling is computationally intractable in general. To sidestep this hardness, we focus on (local or global) log-concave distributions $p(x)$. In this regime, Langevin dynamics yields posterior samples when the exact scores of $p(x)$ are available, but it is brittle to score--estimation error, requiring an MGF bound (sub‑exponential error). By contrast, in the unconditional setting, diffusion models succeed with only an $L^2$ bound on the score error. We prove that combining diffusion models with an *annealed* variant of Langevin dynamics achieves conditional sampling in polynomial time using merely an $L^4$ bound on the score error.

Poster
GLID$^2$E: A Gradient-Free Lightweight Fine-tune Approach for Discrete Biological Sequence Design

Hanqun CAO, Haosen Shi, Chenyu Wang, Sinno Jialin Pan, Pheng-Ann Heng

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The design of biological sequences is essential for engineering functional biomolecules that contribute to advancements in human health and biotechnology. Recent advances in diffusion models, with their generative power and efficient conditional sampling, have made them a promising approach for sequence generation. To enhance model performance on limited data and enable multi-objective design and optimization, reinforcement learning (RL)-based fine-tuning has shown great potential. However, existing post-sampling and fine-tuning methods either lack stability in discrete optimization when avoiding gradients or incur high computational costs when employing gradient-based approaches, creating significant challenges for achieving both control and stability in the tuning process. To address these limitations, we propose GLID$^2$E, a gradient-free RL-based tuning approach for discrete diffusion models. Our method introduces a clipped likelihood constraint to regulate the exploration space and implements reward shaping to better align the generative process with design objectives, ensuring a more stable and efficient tuning process. By integrating these techniques, GLID$^2$E mitigates training instabilities commonly encountered in RL and diffusion-based frameworks, enabling robust optimization even in challenging biological design tasks. In the DNA sequence and protein sequence design systems, GLID$^2$E achieves competitive performance in function-based design while maintaining computational efficiency and a flexible tuning mechanism.

Poster