ICML 2025 Papers

International Conference on Machine Learning

Decision breakdown

3,342papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    1213.6%
  • Spotlight
    2256.7%
  • Poster
    2,99689.6%

Browse all papers

Geometric Representation Condition Improves Equivariant Molecule Generation

Zian Li, Cai Zhou, Xiyuan Wang, Xingang Peng, Muhan Zhang

Expand abstract

Recent advances in molecular generative models have demonstrated great promise for accelerating scientific discovery, particularly in drug design. However, these models often struggle to generate high-quality molecules, especially in conditional scenarios where specific molecular properties must be satisfied. In this work, we introduce GeoRCG, a general framework to improve molecular generative models by integrating geometric representation conditions with provable theoretical guarantees. We decompose the generation process into two stages: first, generating an informative geometric representation; second, generating a molecule conditioned on the representation. Compared with single-stage generation, the easy-to-generate representation in the first stage guides the second stage generation toward a high-quality molecule in a goal-oriented way. Leveraging EDM and SemlaFlow as base generators, we observe significant quality improvements in unconditional molecule generation on the widely used QM9 and GEOM-DRUG datasets. More notably, in the challenging conditional molecular generation task, our framework achieves an average 50\% performance improvement over state-of-the-art approaches, highlighting the superiority of conditioning on semantically rich geometric representations. Furthermore, with such representation guidance, the number of diffusion steps can be reduced to as small as 100 while largely preserving the generation quality achieved with 1,000 steps, thereby significantly reducing the generation iterations needed.

Spotlight
Vision-Language Models Create Cross-Modal Task Representations

Grace Luo, Trevor Darrell, Amir Bar

Expand abstract

Autoregressive vision-language models (VLMs) can handle many tasks within a single model, yet the representations that enable this capability remain opaque. We find that VLMs align conceptually equivalent inputs into a shared task vector, which is invariant to modality (text, image) and format (examples, instruction), and may simplify VLM processing. We measure this alignment via cross-modal transfer--the ability of a task vector derived in one modality to trigger the correct generation in another--on a range of tasks and model architectures. Although the task vector is highly compressed, we find that this single vector outperforms prompting the model with the full task information, unique to this cross-modal case. Furthermore, we show that task vectors can be transferred from a base language model to its fine-tuned vision-language counterpart, and that they can be derived solely from instructions without the need for examples. Taken together, our findings shed light on how VLMs internally process task information, and how they map different modalities into common semantic representations.

Poster
SpargeAttention: Accurate and Training-free Sparse Attention Accelerating Any Model Inference

Jintao Zhang, Chendong Xiang, Haofeng Huang, Jia wei, Haocheng Xi, Jun Zhu, Jianfei Chen

Expand abstract

An efficient attention implementation is essential for large models due to its quadratic time complexity. Fortunately, attention commonly exhibits sparsity, i.e., many values in the attention map are near zero, allowing for the omission of corresponding computations. Many studies have utilized the sparse pattern to accelerate attention. However, most existing works focus on optimizing attention within specific models by exploiting certain sparse patterns of the attention map. A universal sparse attention that guarantees both the speedup and end-to-end performance of diverse models remains elusive. In this paper, we propose SpargeAttn, a universal sparse and quantized attention for any model. Our method uses a two-stage online filter: in the first stage, we rapidly and accurately predict the attention map, enabling the skip of some matrix multiplications in attention. In the second stage, we design an online softmax-aware filter that incurs no extra overhead and further skips some matrix multiplications. Experiments show that our method significantly accelerates diverse models, including language, image, and video generation, without sacrificing end-to-end metrics.

Poster
Thermalizer: Stable autoregressive neural emulation of spatiotemporal chaos

Christian Pedersen, Laure Zanna, Joan Bruna

Expand abstract

Autoregressive surrogate models (or *emulators*) of spatiotemporal systems provide an avenue for fast, approximate predictions, with broad applications across science and engineering. At inference time however, these models are generally unable to provide predictions over long time rollouts due to accumulation of errors leading to diverging trajectories. In essence, emulators operate out of distribution, and controlling the online distribution quickly becomes intractable in large-scale settings. To address this fundamental issue, and focusing on time-stationary systems admitting an invariant measure, we leverage diffusion models to obtain an implicit estimator of the score of this invariant measure. We show that this model of the score function can be used to stabilize autoregressive emulator rollouts by applying on-the-fly denoising during inference, a process we call *thermalization*. Thermalizing an emulator rollout is shown to extend the time horizon of stable predictions by two orders of magnitude in complex systems exhibiting turbulent and chaotic behavior, opening up a novel application of diffusion models in the context of neural emulation.

Poster
RAPID: Long-Context Inference with Retrieval-Augmented Speculative Decoding

Guanzheng Chen, Qilong Feng, Jinjie Ni, Xin Li, Michael Qizhe Shieh

Expand abstract

The emergence of long-context large language models (LLMs) offers a promising alternative to traditional retrieval-augmented generation (RAG) for processing extensive documents. However, the computational overhead of long-context inference presents significant efficiency challenges. While Speculative Decoding (SD) traditionally accelerates inference using smaller draft models, its effectiveness diminishes substantially in long-context scenarios due to memory-bound KV cache operations. We introduce Retrieval-Augmented Speculative Decoding (RAPID), which leverages RAG for both accelerating and enhancing generation quality in long-context inference. RAPID introduces the RAG drafter—a draft LLM operating on shortened retrieval contexts—to speculate on the generation of long-context target LLMs. Our approach enables a new paradigm where same-scale or even larger LLMs can serve as RAG drafters while maintaining computational efficiency. To fully leverage the potentially superior capabilities from stronger RAG drafters, we develop an inference-time knowledge transfer that enriches the target distribution by RAG. Extensive experiments on the LLaMA-3.1 and Qwen2.5 backbones demonstrate that RAPID effectively integrates the strengths of both RAG and long-context LLMs, achieving significant performance improvements (e.g., from 39.33 to 42.83 on InfiniteBench for LLaMA-3.1-8B) with more than 2$\times$ speedups for long-context inference. Our analyses also reveal the robustness of RAPID across various context lengths and retrieval quality.

Spotlight
Mask-Enhanced Autoregressive Prediction: Pay Less Attention to Learn More

Xialie Zhuang, Zhikai Jia, Jianjin Li, Zhenyu Zhang, Li Shen, Zheng Cao, Shiwei Liu

Expand abstract

Large Language Models (LLMs) are discovered to suffer from accurately retrieving key information. To address this, we propose Mask-Enhanced Autoregressive Prediction (MEAP), a simple yet effective training paradigm that seamlessly integrates Masked Language Modeling (MLM) into Next-Token Prediction (NTP) to enhance the latter's in-context retrieval capabilities. Specifically, MEAP first randomly masks a small fraction of input tokens and then directly performs the standard next-token prediction autoregressive using a decoder-only Transformer. MEAP eliminates the need for bidirectional attention or encoder-decoder architectures for MLM, incurring no additional computational overhead during pre-training or inference. Intensive experiments demonstrate that MEAP substantially outperforms NTP on key information retrieval and long-context reasoning tasks, while performing on par or better on commonsense reasoning tasks. The benefits of MEAP also extend to supervised fine-tuning, where it shows remarkable advantages in lost-in-the-middle scenarios, outperforming NTP by 11.77% percentage points. Our analysis indicates that MEAP’s effectiveness arises from its ability to promote more distinguishable attention scores by concentrating on a reduced set of non-masked tokens. This mechanism improves the model’s focus on task-relevant signals while mitigating the influence of peripheral context. These findings position MEAP as a promising training paradigm for large language models. Code has been submitted.

Poster
Graph-Assisted Stitching for Offline Hierarchical Reinforcement Learning

Seungho Baek, taegeon park, Jongchan Park, Seungjun Oh, Yusung Kim

Expand abstract

Existing offline hierarchical reinforcement learning methods rely on high-level policy learning to generate subgoal sequences. However, their efficiency degrades as task horizons increase, and they lack effective strategies for stitching useful state transitions across different trajectories. We propose Graph-Assisted Stitching (GAS), a novel framework that formulates subgoal selection as a graph search problem rather than learning an explicit high-level policy. By embedding states into a Temporal Distance Representation (TDR) space, GAS clusters semantically similar states from different trajectories into unified graph nodes, enabling efficient transition stitching. A shortest-path algorithm is then applied to select subgoal sequences within the graph, while a low-level policy learns to reach the subgoals. To improve graph quality, we introduce the Temporal Efficiency (TE) metric, which filters out noisy or inefficient transition states, significantly enhancing task performance. GAS outperforms prior offline HRL methods across locomotion, navigation, and manipulation tasks. Notably, in the most stitching-critical task, it achieves a score of 88.3, dramatically surpassing the previous state-of-the-art score of 1.0. Our source code is available at: https://github.com/qortmdgh4141/GAS.

Poster
$K^2$VAE: A Koopman-Kalman Enhanced Variational AutoEncoder for Probabilistic Time Series Forecasting

Xingjian Wu, Xiangfei Qiu, Hongfan Gao, Jilin Hu, Bin Yang, Chenjuan Guo

Expand abstract

Probabilistic Time Series Forecasting (PTSF) plays a crucial role in decision-making across various fields, including economics, energy, and transportation. Most existing methods excell at short-term forecasting, while overlooking the hurdles of Long-term Probabilistic Time Series Forecasting (LPTSF). As the forecast horizon extends, the inherent nonlinear dynamics have a significant adverse effect on prediction accuracy, and make generative models inefficient by increasing the cost of each iteration. To overcome these limitations, we introduce $K^2$VAE, an efficient VAE-based generative model that leverages a KoopmanNet to transform nonlinear time series into a linear dynamical system, and devises a KalmanNet to refine predictions and model uncertainty in such linear system, which reduces error accumulation in long-term forecasting. Extensive experiments demonstrate that $K^2$VAE outperforms state-of-the-art methods in both short- and long-term PTSF, providing a more efficient and accurate solution.

Spotlight
Polynomial-Delay MAG Listing with Novel Locally Complete Orientation Rules

Tian-Zuo Wang, Wen-Bo Du, Zhi-Hua Zhou

Expand abstract

A maximal ancestral graph (MAG) is widely used to characterize the causal relations among observable variables in the presence of latent variables. However, given observational data, only a partial ancestral graph representing a Markov equivalence class (MEC) of MAGs is identifiable, which generally contains uncertain causal relations. Due to the uncertainties, \emph{MAG listing}, \emph{i.e.}, listing all the MAGs in the MEC, is critical for many downstream tasks. In this paper, we present the first \emph{polynomial-delay} MAG listing method, where delay refers to the time for outputting each MAG, through introducing enumerated structural knowledge in the form of \emph{singleton background knowledge (BK)}. To incorporate such knowledge, we propose the \emph{sound} and \emph{locally complete} orientation rules. By recursively introducing singleton BK and applying the rules, our method can output all and only MAGs in the MEC with polynomial delay. Additionally, while the proposed novel rules enable more efficient MAG listing, for the goal of incorporating general BK, we present two counterexamples to imply that existing rules including ours, are not yet \emph{complete}, which motivate two more rules. Experimental results validate the efficiency of the proposed MAG listing method.

Oral
Relative Error Fair Clustering in the Weak-Strong Oracle Model

Vladimir Braverman, Prathamesh Dharangutte, Shaofeng H.-C. Jiang, Hoai-An Nguyen, Chen Wang, Yubo Zhang, Samson Zhou

Expand abstract

We study fair clustering problems in a setting where distance information is obtained from two sources: a strong oracle providing exact distances, but at a high cost, and a weak oracle providing potentially inaccurate distance estimates at a low cost. The goal is to produce a near-optimal fair clustering on $n$ input points with a minimum number of strong oracle queries. This models the increasingly common trade-off between accurate but expensive similarity measures (e.g., large-scale embeddings) and cheaper but inaccurate alternatives. The study of fair clustering in the model is motivated by the important quest of achieving fairness with the presence of inaccurate information. We achieve the first $(1+\varepsilon)$-coresets for fair $k$-median clustering using $\text{poly}\left(\frac{k}{\varepsilon}\cdot\log n\right)$ queries to the strong oracle. Furthermore, our results imply coresets for the standard setting (without fairness constraints), and we could in fact obtain $(1+\varepsilon)$-coresets for $(k,z)$-clustering for general $z=O(1)$ with a similar number of strong oracle queries. In contrast, previous results achieved a constant-factor $(>10)$ approximation for the standard $k$-clustering problems, and no previous work considered the fair $k$-median clustering problem.

Poster
Joint MoE Scaling Laws: Mixture of Experts Can Be Memory Efficient

Jan Ludziejewski, Maciej Pióro, Jakub Krajewski, Maciej Stefaniak, Michał Krutul, Jan Małaśnicki, Marek Cygan, Piotr Sankowski, Kamil Adamczewski, Piotr Miłoś, Sebastian Jaszczur

Expand abstract

Mixture of Experts (MoE) architectures have significantly increased computational efficiency in both research and real-world applications of large-scale machine learning models. However, their scalability and efficiency under memory constraints remain relatively underexplored. In this work, we present joint scaling laws for dense and MoE models, incorporating key factors such as the number of active parameters, dataset size, and the number of experts. Our findings provide a principled framework for selecting the optimal MoE configuration under fixed memory and compute budgets. Surprisingly, we show that MoE models can be more memory-efficient than dense models, contradicting conventional wisdom. Extensive empirical validation confirms the theoretical predictions of our scaling laws. These results offer actionable insights for designing and deploying MoE models in practical large-scale training scenarios.

Poster
Provably Near-Optimal Federated Ensemble Distillation with Negligible Overhead

Won-Jun Jang, Hyeon-Seo Park, Si-Hyeon Lee

Expand abstract

Federated ensemble distillation addresses client heterogeneity by generating pseudo-labels for an unlabeled server dataset based on client predictions and training the server model using the pseudo-labeled dataset. The unlabeled server dataset can either be pre-existing or generated through a data-free approach. The effectiveness of this approach critically depends on the method of assigning weights to client predictions when creating pseudo-labels, especially in highly heterogeneous settings. Inspired by theoretical results from GANs, we propose a provably near-optimal weighting method that leverages client discriminators trained with a server-distributed generator and local datasets. Our experiments on various image classification tasks demonstrate that the proposed method significantly outperforms baselines. Furthermore, we show that the additional communication cost, client-side privacy leakage, and client-side computational overhead introduced by our method are negligible, both in scenarios with and without a pre-existing server dataset.

Poster
PENCIL: Long Thoughts with Short Memory

Chenxiao Yang, Nathan Srebro, David McAllester, Zhiyuan Li

Expand abstract

While state-of-the-art LLMs have demonstrated great promise of using long Chains-of-Thought (CoT) to boost reasoning, scaling it up to more challenging problems is fundamentally limited by suboptimal memory usage — intermediate computations accumulate indefinitely in context even no longer needed for future thoughts. We introduce PENCIL, which incorporates a novel reduction mechanism into the autoregressive generation process that recursively clean up intermediate thoughts based on patterns learned from training. By alternately generating and erasing, PENCIL can think deeper to solve harder problems using shorter context and less computes. Empirically, for example, we demonstrate PENCIL with a small 25M-parameter transformer and 2048 context length solves Einstein's puzzle — a task that challenges much larger models like GPT-4. Theoretically, we prove PENCIL can perform universal efficient computation by simulating any Turing machines with optimal time and space complexity, and thus can solve arbitrary computable tasks that are otherwise intractable for vanilla CoT.

Poster
Imagine While Reasoning in Space: Multimodal Visualization-of-Thought

Chengzu Li, Wenshan Wu, Huanyu Zhang, Yan Xia, Shaoguang Mao, Li Dong, Ivan Vulić, Furu Wei

Expand abstract

Chain-of-Thought (CoT) prompting has proven highly effective for enhancing complex reasoning in Large Language Models (LLMs) and Multimodal Large Language Models (MLLMs). Yet, it struggles in complex spatial reasoning tasks. Nonetheless, human cognition extends beyond language alone, enabling the remarkable capability to think in both words and images. Inspired by this mechanism, we propose a new reasoning paradigm, Multimodal Visualization-of-Thought (MVoT). It enables visual thinking in MLLMs by generating image visualizations of their reasoning traces. To ensure high-quality visualization, we introduce token discrepancy loss into autoregressive MLLMs. This innovation significantly improves both visual coherence and fidelity. We validate this approach through several dynamic spatial reasoning tasks. Experimental results reveal that MVoT demonstrates competitive performance across tasks. Moreover, it exhibits robust and reliable improvements in the most challenging scenarios where CoT fails. Ultimately, MVoT establishes new possibilities for complex reasoning tasks where visual thinking can effectively complement verbal reasoning.

Poster
Stochastic Layer-Wise Shuffle for Improving Vision Mamba Training

Zizheng Huang, Haoxing Chen, Jiaqi Li, jun lan, Huijia Zhu, Weiqiang Wang, Limin Wang

Expand abstract

Recent Vision Mamba (Vim) models exhibit nearly linear complexity in sequence length, making them highly attractive for processing visual data. However, the training methodologies and their potential are still not sufficiently explored. In this paper, we investigate strategies for Vim and propose Stochastic Layer-Wise Shuffle (SLWS), a novel regularization method that can effectively improve the Vim training. Without architectural modifications, this approach enables the non-hierarchical Vim to get leading performance on ImageNet-1K compared with the similar type counterparts. Our method operates through four simple steps per layer: probability allocation to assign layer-dependent shuffle rates, operation sampling via Bernoulli trials, sequence shuffling of input tokens, and order restoration of outputs. SLWS distinguishes itself through three principles: \textit{(1) Plug-and-play:} No architectural modifications are needed, and it is deactivated during inference. \textit{(2) Simple but effective:} The four-step process introduces only random permutations and negligible overhead. \textit{(3) Intuitive design:} Shuffling probabilities grow linearly with layer depth, aligning with the hierarchical semantic abstraction in vision models. Our work underscores the importance of tailored training strategies for Vim models and provides a helpful way to explore their scalability. Code and models are available at https://github.com/huangzizheng01/ShuffleMamba

Poster
Exploiting Presentative Feature Distributions for Parameter-Efficient Continual Learning of Large Language Models

Xin Cheng, Jiabo Ye, Haiyang Xu, Ming Yan, Ji Zhang, Feng Liu, Fei Huang, Lei Feng

Expand abstract

Endowing large language models (LLMs) with continual learning (CL) capacities is practically important, which enables them to dynamically acquire new knowledge over time. Although many effective methods have been proposed for CL of LLMs, they did not consider online scenarios, thereby sharing a common problem: information leakage (IL), where the task-related information of learned tasks is accessed or reused again. IL not only imposes potential risks on data privacy protection but also significantly hinders the deployment of LLMs in real-world scenarios. To avoid IL while maintaining outstanding CL performance, we propose a novel CL method for LLMs, which first characterizes a parameter-efficient fine-tuning (PEFT) block by a presentative feature distribution, and then dynamically selects the appropriate PEFT blocks for each instance based on its similarity with the presentative feature distributions. Extensive experiments validate the effectiveness of our method on the CL of LLM, showcasing its potential to enhance both privacy and adaptability in practical applications.

Poster
Efficient Molecular Conformer Generation with SO(3)-Averaged Flow Matching and Reflow

Zhonglin Cao, Mario Geiger, Allan Dos Santos Costa, Danny Reidenbach, Karsten Kreis, Tomas Geffner, Franco Pellegrini, Guoqing Zhou, Emine Kucukbenli

Expand abstract

Fast and accurate generation of molecular conformers is desired for downstream computational chemistry and drug discovery tasks. Currently, training and sampling state-of-the-art diffusion or flow-based models for conformer generation require significant computational resources. In this work, we build upon flow-matching and propose two mechanisms for accelerating training and inference of generative models for 3D molecular conformer generation. For fast training, we introduce the SO(3)-*Averaged Flow* training objective, which leads to faster convergence to better generation quality compared to conditional optimal transport flow or Kabsch-aligned flow. We demonstrate that models trained using SO(3)-*Averaged Flow* can reach state-of-the-art conformer generation quality. For fast inference, we show that the reflow and distillation methods of flow-based models enable few-steps or even one-step molecular conformer generation with high quality. The training techniques proposed in this work show a path towards highly efficient molecular conformer generation with flow-based models.

Poster
Flex3D: Feed-Forward 3D Generation with Flexible Reconstruction Model and Input View Curation

Junlin Han, Jianyuan Wang, Andrea Vedaldi, Philip Torr, Filippos Kokkinos

Expand abstract

Generating high-quality 3D content from text, single images, or sparse view images remains a challenging task with broad applications. Existing methods typically employ multi-view diffusion models to synthesize multi-view images, followed by a feed-forward process for 3D reconstruction. However, these approaches are often constrained by a small and fixed number of input views, limiting their ability to capture diverse viewpoints and, even worse, leading to suboptimal generation results if the synthesized views are of poor quality. To address these limitations, we propose Flex3D, a novel two-stage framework capable of leveraging an arbitrary number of high-quality input views. The first stage consists of a candidate view generation and curation pipeline. In the second stage, the curated views are fed into a Flexible Reconstruction Model (FlexRM), built upon a transformer architecture that can effectively process an arbitrary number of inputs. Through extensive exploration of design and training strategies, we optimize FlexRM to achieve superior performance in both reconstruction and generation tasks. Our results demonstrate that Flex3D achieves state-of-the-art performance, with a user study winning rate of over 92% in 3D generation tasks when compared to several of the latest feed-forward 3D generative models.

Poster
Probabilistic Interactive 3D Segmentation with Hierarchical Neural Processes

Jie Liu, Pan Zhou, Zehao Xiao, Jiayi Shen, Wenzhe Yin, Jan-jakob Sonke, Efstratios Gavves

Expand abstract

Interactive 3D segmentation has emerged as a promising solution for generating accurate object masks in complex 3D scenes by incorporating user-provided clicks. However, two critical challenges remain underexplored: (1) effectively generalizing from sparse user clicks to produce accurate segmentations and (2) quantifying predictive uncertainty to help users identify unreliable regions. In this work, we propose \emph{NPISeg3D}, a novel probabilistic framework that builds upon Neural Processes (NPs) to address these challenges. Specifically, NPISeg3D introduces a hierarchical latent variable structure with scene-specific and object-specific latent variables to enhance few-shot generalization by capturing both global context and object-specific characteristics. Additionally, we design a probabilistic prototype modulator that adaptively modulates click prototypes with object-specific latent variables, improving the model’s ability to capture object-aware context and quantify predictive uncertainty. Experiments on four 3D point cloud datasets demonstrate that NPISeg3D achieves superior segmentation performance with fewer clicks while providing reliable uncertainty estimations.

Poster
Cross-Modal Alignment via Variational Copula Modelling

Feng Wu, Tsai Hor Chan, Fuying Wang, Guosheng Yin, Lequan Yu

Expand abstract

Various data modalities are common in real-world applications. (e.g., EHR, medical images and clinical notes in healthcare). Thus, it is essential to develop multimodal learning methods to aggregate information from multiple modalities. The main challenge is appropriately aligning and fusing the representations of different modalities into a joint distribution. Existing methods mainly rely on concatenation or the Kronecker product, oversimplifying interactions structure between modalities and indicating a need to model more complex interactions. Additionally, the joint distribution of latent representations with higher-order interactions is underexplored. Copula is a powerful statistical structure in modelling the interactions between variables, as it bridges the joint distribution and marginal distributions of multiple variables. In this paper, we propose a novel copula modelling-driven multimodal learning framework, which focuses on learning the joint distribution of various modalities to capture the complex interaction among them. The key idea is interpreting the copula model as a tool to align the marginal distributions of the modalities efficiently. By assuming a Gaussian mixture distribution for each modality and a copula model on the joint distribution, our model can also generate accurate representations for missing modalities. Extensive experiments on public MIMIC datasets demonstrate the superior performance of our model over other competitors. The code is anonymously available at https://github.com/HKU-MedAI/CMCM.

Poster