ICML 2025 Papers

International Conference on Machine Learning

Decision breakdown

3,342papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    1213.6%
  • Spotlight
    2256.7%
  • Poster
    2,99689.6%

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Topic: Applications · chemistry physics and earth sciences · 287 papers · Reset filters

Pretraining Generative Flow Networks with Inexpensive Rewards for Molecular Graph Generation

Mohit Pandey, Gopeshh Subbaraj, Artem Cherkasov, Martin Ester, Emmanuel Bengio

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Generative Flow Networks (GFlowNets) have recently emerged as a suitable framework for generating diverse and high-quality molecular structures by learning from rewards treated as unnormalized distributions. Previous works in this framework often restrict exploration by using predefined molecular fragments as building blocks, limiting the chemical space that can be accessed. In this work, we introduce Atomic GFlowNets (A-GFNs), a foundational generative model leveraging individual atoms as building blocks to explore drug-like chemical space more comprehensively. We propose an unsupervised pre-training approach using drug-like molecule datasets, which teaches A-GFNs about inexpensive yet informative molecular descriptors such as drug-likeliness, topological polar surface area, and synthetic accessibility scores. These properties serve as proxy rewards, guiding A-GFNs towards regions of chemical space that exhibit desirable pharmacological properties. We further implement a goal-conditioned finetuning process, which adapts A-GFNs to optimize for specific target properties. In this work, we pretrain A-GFN on a subset of ZINC dataset, and by employing robust evaluation metrics we show the effectiveness of our approach when compared to other relevant baseline methods for a wide range of drug design tasks. The code is accessible at https://github.com/diamondspark/AGFN.

Poster
Alberta Wells Dataset: Pinpointing Oil and Gas Wells from Satellite Imagery

Pratinav Seth, Michelle Lin, BREFO DWAMENA YAW, Jade Boutot, Mary Kang, David Rolnick

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Millions of abandoned oil and gas wells are scattered across the world, leaching methane into the atmosphere and toxic compounds into the groundwater. Many of these locations are unknown, preventing the wells from being plugged and their polluting effects averted. Remote sensing is a relatively unexplored tool for pinpointing abandoned wells at scale. We introduce the first large-scale Benchmark dataset for this problem, leveraging high-resolution multi-spectral satellite imagery from Planet Labs. Our curated Dataset comprises over 213,000 wells (abandoned, suspended, and active) from Alberta, a region with especially high well density, sourced from the Alberta Energy Regulator and verified by domain experts. We evaluate baseline algorithms for well detection and segmentation, showing the promise of computer vision approaches but also significant room for improvement.

Poster
Contextual Linear Bandits with Delay as Payoff

Mengxiao Zhang, Yingfei Wang, Haipeng Luo

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A recent work by Schlisselberg et al. (2025) studies a delay-as-payoff model for stochastic multi-armed bandits, where the payoff (either loss or reward) is delayed for a period that is proportional to the payoff. While this captures many real-world applications, the simple multi-armed bandit setting limits the practicality of their results. In this paper, we address this limitation by studying the delay-as-payoff model for contextual linear bandits. Specifically, we start from the case with a fixed action set and propose an efficient algorithm whose regret overhead compared to the standard no-delay case is only of order $D\Delta_{\max}\log T$, where $T$ is the total horizon, $D$ is the maximum delay, and $\Delta_{\max}$ is the maximum suboptimality gap. When payoff is loss, we also show further improvement of the bound, demonstrating a separation between reward and loss similar to Schlisselberg et al. (2025). Contrary to standard linear bandit algorithms that construct least squares estimator and confidence ellipsoid, the main novelty of our algorithm is to apply a phased arm elimination procedure by only picking the **volumetric spanners** of the action set, which addresses challenges arising from both payoff-dependent delays and large action sets. We further extend our results to the case with varying action sets by adopting the reduction from Hanna et al. (2023). Finally, we implement our algorithm and showcase its effectiveness and superior performance in experiments.

Poster
Let LLM Tell What to Prune and How Much to Prune

Mingzhe Yang, Sihao Lin, Changlin Li, Xiaojun Chang

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Large language models (LLMs) have revolutionized various AI applications. However, their billions of parameters pose significant challenges for practical deployment. Structured pruning is a hardware-friendly compression technique and receives widespread attention. Nonetheless, existing literature typically targets a single structure of LLMs. We observe that the structure units of LLMs differ in terms of inference cost and functionality. Therefore, pruning a single structure unit in isolation often results in an imbalance between performance and efficiency. In addition, previous works mainly employ a prescribed pruning ratio. Since the significance of LLM modules may vary, it is ideal to distribute the pruning load to a specific structure unit according to its role within LLMs. To address the two issues, we propose a pruning method that targets multiple LLM modules with dynamic pruning ratios. Specifically, we find the intrinsic properties of LLMs can guide us to determine the importance of each module and thus distribute the pruning load on demand, i.e., what to prune and how much to prune. This is achieved by quantifying the complex interactions within LLMs. Extensive experiments on multiple benchmarks and LLM variants demonstrate that our method effectively balances the trade-off between efficiency and performance.

Poster
SGD Jittering: A Training Strategy for Robust and Accurate Model-Based Architectures

Peimeng Guan, Mark A. Davenport

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Inverse problems aim to reconstruct unseen data from corrupted or perturbed measurements. While most work focuses on improving reconstruction quality, generalization accuracy and robustness are equally important, especially for safety-critical applications. Model-based architectures (MBAs), such as loop unrolling methods, are considered more interpretable and achieve better reconstructions. Empirical evidence suggests that MBAs are more robust to perturbations than black-box solvers, but the accuracy-robustness tradeoff in MBAs remains underexplored. In this work, we propose a simple yet effective training scheme for MBAs, called SGD jittering, which injects noise iteration-wise during reconstruction. We theoretically demonstrate that SGD jittering not only generalizes better than the standard mean squared error training but is also more robust to average-case attacks. We validate SGD jittering using denoising toy examples, seismic deconvolution, and single-coil MRI reconstruction. Both SGD jittering and its SPGD extension yield cleaner reconstructions for out-of-distribution data and demonstrates enhanced robustness against adversarial attacks.

Poster
ABNet: Adaptive explicit-Barrier Net for Safe and Scalable Robot Learning

Wei Xiao, Tsun-Hsuan Wang, Chuang Gan, Daniela Rus

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Safe learning is central to AI-enabled robots where a single failure may lead to catastrophic results. Existing safe learning methods are not scalable, inefficient and hard to train, and tend to generate unstable signals under noisy inputs that are challenging to be deployed for robots. To address these challenges, we propose Adaptive explicit-Barrier Net (ABNet) in which barriers explicitly show up in the closed-form model that guarantees safety. The ABNet has the potential to incrementally scale toward larger safe foundation models. Each head of ABNet could learn safe control policies from different features and focuses on specific part of the observation. In this way, we do not need to directly construct a large model for complex tasks, which significantly facilitates the training of the model while ensuring its stable output. Most importantly, we can still formally prove the safety guarantees of the ABNet. We demonstrate the efficiency and strength of ABNet in 2D robot obstacle avoidance, safe robot manipulation, and vision-based end-to-end autonomous driving, with results showing much better robustness and guarantees over existing models.

Poster
Improved Regret Analysis in Gaussian Process Bandits: Optimality for Noiseless Reward, RKHS norm, and Non-Stationary Variance

Shogo Iwazaki, Shion Takeno

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We study the Gaussian process (GP) bandit problem, whose goal is to minimize regret under an unknown reward function lying in some reproducing kernel Hilbert space (RKHS). The maximum posterior variance analysis is vital in analyzing near-optimal GP bandit algorithms such as maximum variance reduction (MVR) and phased elimination (PE). Therefore, we first show the new upper bound of the maximum posterior variance, which improves the dependence of the noise variance parameters of the GP. By leveraging this result, we refine the MVR and PE to obtain (i) a nearly optimal regret upper bound in the noiseless setting and (ii) regret upper bounds that are optimal with respect to the RKHS norm of the reward function. Furthermore, as another application of our proposed bound, we analyze the GP bandit under the time-varying noise variance setting, which is the kernelized extension of the linear bandit with heteroscedastic noise. For this problem, we show that MVR and PE-based algorithms achieve noise variance-dependent regret upper bounds, which matches our regret lower bound.

Oral
NEAR: Neural Electromagnetic Array Response

Yinyan Bu, Jiajie Yu, Kai Zheng, Xinyu Zhang, Piya Pal

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We address the challenge of achieving angular super-resolution in multi-antenna radar systems that are widely used for localization, navigation, and automotive perception. A multi-antenna radar achieves very high resolution by computationally creating a large virtual sensing system using very few physical antennas. However, practical constraints imposed by hardware, noise, and a limited number of antennas can impede its performance. Conventional supervised learning models that rely on extensive pre-training with large datasets, often exhibit poor generalization in unseen environments. To overcome these limitations, we propose NEAR, an untrained implicit neural representation (INR) framework that predicts radar responses at unseen locations from sparse measurements, by leveraging latent harmonic structures inherent in radar wave propagation. We establish new theoretical results linking antenna array response to expressive power of INR architectures, and develop a novel physics-informed and latent geometry-aware regularizer. Our approach integrates classical signal representation with modern implicit neural learning, enabling high-resolution radar sensing that is both interpretable and generalizable. Extensive simulations and real-world experiments using radar platforms demonstrate NEAR's effectiveness and its ability to adapt to unseen environments.

Poster
Inverse Reinforcement Learning with Switching Rewards and History Dependency for Characterizing Animal Behaviors

Jingyang Ke, Feiyang Wu, Jiyi Wang, Jeffrey Markowitz, Anqi Wu

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Traditional approaches to studying decision-making in neuroscience focus on simplified behavioral tasks where animals perform repetitive, stereotyped actions to receive explicit rewards. While informative, these methods constrain our understanding of decision-making to short timescale behaviors driven by explicit goals. In natural environments, animals exhibit more complex, long-term behaviors driven by intrinsic motivations that are often unobservable. Recent works in time-varying inverse reinforcement learning (IRL) aim to capture shifting motivations in long-term, freely moving behaviors. However, a crucial challenge remains: animals make decisions based on their history, not just their current state. To address this, we introduce SWIRL (SWitching IRL), a novel framework that extends traditional IRL by incorporating time-varying, history-dependent reward functions. SWIRL models long behavioral sequences as transitions between short-term decision-making processes, each governed by a unique reward function. SWIRL incorporates biologically plausible history dependency to capture how past decisions and environmental contexts shape behavior, offering a more accurate description of animal decision-making. We apply SWIRL to simulated and real-world animal behavior datasets and show that it outperforms models lacking history dependency, both quantitatively and qualitatively. This work presents the first IRL model to incorporate history-dependent policies and rewards to advance our understanding of complex, naturalistic decision-making in animals.

Poster
Think Twice, Act Once: A Co-Evolution Framework of LLM and RL for Large-Scale Decision Making

Xu Wan, Wenyue Xu, Chao Yang, Mingyang Sun

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Recent advancements in Large Language Models (LLMs) and Reinforcement Learning (RL) have shown significant promise in decision-making tasks. Nevertheless, for large-scale industrial decision problems, both approaches face distinct challenges: LLMs lack real-time long-sequence decision-making capabilities, while RL struggles with sample efficiency in vast action spaces. To bridge this gap, we propose **A**gents **C**o-**E**volution (ACE), a synergistic framework between LLMs and RL agent for large-scale decision-making scenarios. ACE introduces a dual-role trajectory refinement mechanism where LLMs act as both Policy Actor and Value Critic during RL's training: the Actor refines suboptimal actions via multi-step reasoning and environment validation, while the Critic performs temporal credit assignment through trajectory-level reward shaping. Concurrently, RL agent enhance LLMs' task-specific decision-making via prioritized experience replay. Through extensive experiments across multiple power grid operation challenges with action spaces exceeding 60K discrete actions, ACE demonstrates superior performance over existing RL methods and LLM-based methods.

Poster
A Non-isotropic Time Series Diffusion Model with Moving Average Transitions

Chenxi Wang, Linxiao Yang, Zhixian Wang, Liang Sun, Yi Wang

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Diffusion models, known for their generative ability, have recently been adapted to time series analysis. Most pioneering works rely on the standard isotropic diffusion, treating each time step and the entire frequency spectrum identically. However, it may not be suitable for time series, which often have more informative low-frequency components. We empirically found that direct application of standard diffusion to time series may cause gradient contradiction during training, due to the rapid decrease of low-frequency information in the diffusion process. To this end, we proposed a novel time series diffusion model, MA-TSD, which utilizes the moving average, a natural low-frequency filter, as the forward transition. Its backward process is accelerable like DDIM and can be further considered a time series super-resolution. Our experiments on various datasets demonstrated MA-TSD's superior performance in time series forecasting and super-resolution tasks.

Poster
Learning with Expected Signatures: Theory and Applications

Lorenzo Lucchese, Mikko S. Pakkanen, Almut E. D. Veraart

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The expected signature maps a collection of data streams to a lower dimensional representation, with a remarkable property: the resulting feature tensor can fully characterize the data generating distribution. This "model-free"' embedding has been successfully leveraged to build multiple domain-agnostic machine learning (ML) algorithms for time series and sequential data. The convergence results proved in this paper bridge the gap between the expected signature's empirical discrete-time estimator and its theoretical continuous-time value, allowing for a more complete probabilistic interpretation of expected signature-based ML methods. Moreover, when the data generating process is a martingale, we suggest a simple modification of the expected signature estimator with significantly lower mean squared error and empirically demonstrate how it can be effectively applied to improve predictive performance.

Oral
Breaking Barriers: Combinatorial Algorithms for Non-Monotone Submodular Maximization with Sublinear Adaptivity and $1/e$ Approximation

Yixin Chen, Wenjing Chen, Alan Kuhnle

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With the rapid growth of data in modern applications, parallel combinatorial algorithms for maximizing non-monotone submodular functions have gained significant attention. In the parallel computation setting, the state-of-the-art approximation ratio of $1/e$ is achieved by a continuous algorithm (Ene & Nguyen, 2020) with adaptivity $\mathcal O (log(n))$. In this work, we focus on size constraints and present the first combinatorial algorithm matching this bound – a randomized parallel approach achieving $1/e − \epsilon$ approximation ratio. This result bridges the gap between continuous and combinatorial approaches for this problem. As a byproduct, we also develop a simpler $(1/4 − \epsilon)$-approximation algorithm with high probability $(\ge 1 − 1/n)$. Both algorithms achieve $\mathcal O (log(n) log(k))$ adaptivity and $\mathcal O (n log(n) log(k)) query complexity. Empirical results show our algorithms achieve competitive objective values, with the $(1/4 − \epsilon)$-approximation algorithm particularly efficient in queries.

Poster
Interpolating Neural Network-Tensor Decomposition (INN-TD): a scalable and interpretable approach for large-scale physics-based problems

Jiachen Guo, Xiaoyu Xie, Chanwook Park, Hantao Zhang, Matthew J. Politis, Gino Domel, Wing Kam Liu

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Deep learning has been extensively employed as a powerful function approximator for modeling physics-based problems described by partial differential equations (PDEs). Despite their popularity, standard deep learning models often demand prohibitively large computational resources and yield limited accuracy when scaling to large-scale, high-dimensional physical problems. Their black-box nature further hinders their application in industrial problems where interpretability and high precision are critical. To overcome these challenges, this paper introduces Interpolating Neural Network-Tensor Decomposition (INN-TD), a scalable and interpretable framework that has the merits of both machine learning and finite element methods for modeling large-scale physical systems. By integrating locally supported interpolation functions from finite element into the network architecture, INN-TD achieves a sparse learning structure with enhanced accuracy, faster training/solving speed, and reduced memory footprint. This makes it particularly effective for tackling large-scale high-dimensional parametric PDEs in training, solving, and inverse optimization tasks in physical problems where high precision is required.

Poster
Relational Invariant Learning for Robust Solvation Free Energy Prediction

yeyunchen

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Predicting the solvation free energy of molecules using graph neural networks holds significant potential for advancing drug discovery and the design of novel materials. While previous methods have demonstrated success on independent and identically distributed (IID) datasets, their performance in out-of-distribution (OOD) scenarios remains largely unexplored. We propose a novel Relational Invariant Learning framework (RILOOD) to enhance OOD generalization in solvation free energy prediction. RILOOD comprises three key components: (i) a mixup-based conditional modeling module that integrates diverse environments, (ii) a novel multi-granularity refinement strategy that extends beyond core substructures to enable context-aware representation learning for capturing multi-level interactions, and (iii) an invariant learning mechanism that identifies robust patterns generalizable to unseen environments. Extensive experiments demonstrate that RILOOD significantly outperforms state-of-the-art methods across various distribution shifts, highlighting its effectiveness in improving solvation free energy prediction under diverse conditions.

Spotlight
Diffusion on Language Model Encodings for Protein Sequence Generation

Viacheslav Meshchaninov, Pavel Strashnov, Andrey Shevtsov, Fedor Nikolaev, Nikita Ivanisenko, Olga Kardymon, Dmitry Vetrov

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Protein *sequence* design has seen significant advances through discrete diffusion and autoregressive approaches, yet the potential of continuous diffusion remains underexplored. Here, we present *DiMA*, a latent diffusion framework that operates on protein language model representations. Through systematic exploration of architectural choices and diffusion components, we develop a robust methodology that generalizes across multiple protein encoders ranging from 8M to 3B parameters. We demonstrate that our framework achieves consistently high performance across sequence-only (ESM-2, ESMc), dual-decodable (CHEAP), and multimodal (SaProt) representations using the same architecture and training approach. We conduct extensive evaluation of existing methods alongside *DiMA* using multiple metrics across two protein modalities, covering quality, diversity, novelty, and distribution matching of generated proteins. *DiMA* consistently produces novel, high-quality and diverse protein sequences and achieves strong results compared to baselines such as autoregressive, discrete diffusion and flow matching language models. The model demonstrates versatile functionality, supporting conditional generation tasks including protein family-generation, motif scaffolding and infilling, and fold-specific sequence design, despite being trained solely on sequence data. This work provides a universal continuous diffusion framework for protein sequence generation, offering both architectural insights and practical applicability across various protein design scenarios. Code is released at [GitHub](https://github.com/MeshchaninovViacheslav/DiMA).

Poster
Safety-Polarized and Prioritized Reinforcement Learning

Ke Fan, Jinpeng Zhang, Xuefeng Zhang, Yunze Wu, Jingyu Cao, Yuan Zhou, Jianzhu Ma

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Motivated by the first priority of safety in many real-world applications, we propose \textsc{MaxSafe}, a chance-constrained bi-level optimization framework for safe reinforcement learning. \textsc{MaxSafe} first minimizes the unsafe probability and then maximizes the return among the safest policies. We provide a tailored Q-learning algorithm for the \textsc{MaxSafe} objective, featuring a novel learning process for \emph{optimal action masks} with theoretical convergence guarantees. To enable the application of our algorithm to large-scale experiments, we introduce two key techniques: \emph{safety polarization} and \emph{safety prioritized experience replay}. Safety polarization generalizes the optimal action masking by polarizing the Q-function, which assigns low values to unsafe state-action pairs, effectively discouraging their selection. In parallel, safety prioritized experience replay enhances the learning of optimal action masks by prioritizing samples based on temporal-difference (TD) errors derived from our proposed state-action reachability estimation functions. This approach efficiently addresses the challenges posed by sparse cost signals. Experiments on diverse autonomous driving and safe control tasks show that our methods achieve near-maximal safety and an optimal reward-safety trade-off.

Poster
MixMin: Finding Data Mixtures via Convex Minimization

Anvith Thudi, Evianne Rovers, Yangjun Ruan, Tristan Thrush, Chris J. Maddison

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Modern machine learning pipelines are increasingly combining and mixing data from diverse and disparate sources, e.g., pre-training large language models. Yet, finding the optimal data mixture is a challenging and open problem. We formalize this data mixing problem as a bi-level objective: the best mixture is the one that would lead to the best model for a downstream objective. Unfortunately, this objective is generally intractable. In this paper, we make the observation that the bi-level data mixing objective becomes convex as our model class becomes larger. We develop and study a gradient-based approach for optimizing this convex objective, which we call MixMin, and test it on language modeling and chemistry tasks. MixMin was the only method that uniformly improved the data mixture in all our experiments. With MixMin, we improved the data mixture using less than 0.2% additional compute for a pythia-$410M$ model trained on $8.2B$ tokens, resulting between 1-5% relative improvement to negative log likelihood on PIQA, ARC Easy, SciQ, and OpenWebMath. Crucially, we found that MixMin mixtures for smaller models improved training of larger models, suggesting that MixMin mixtures may be scale-invariant. When mixing bioassay data to train an XGBoost model, we saw improvements to average precision scores of $0.03-0.15$.

Poster
FlashTP: Fused, Sparsity-Aware Tensor Product for Machine Learning Interatomic Potentials

Seung Yul Lee, Hojoon Kim, Yutack Park, Dawoon Jeong, Seungwu Han, Yeonhong Park, Jae W. Lee

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Machine Learning Interatomic Potentials (MLIPs) enable efficient molecular dynamics (MD) simulations with high accuracy. While equivariant MLIPs achieve state-of-the-art accuracy, they face significant computational bottlenecks centered around their Tensor-Product layer, which account for up to 75\% of training time and cause substantial memory overhead. We present FlashTP, a highly optimized tensor-product library that addresses these inefficiencies through kernel fusion, sparse computation, and path-aggregated execution. FlashTP achieves up to 41.6$\times$ and 60.8$\times$ kernel speedups over _e3nn_ and NVIDIA cuEquivariance, respectively. For SevenNet-l3i5, it delivers 4.2$\times$ and 3.5$\times$ speedup while reducing peak memory usage by 6.3$\times$ and 6.2$\times$ for inference and training, respectively. The code is available at https://github.com/SNU-ARC/flashTP.

Spotlight
DocVXQA: Context-Aware Visual Explanations for Document Question Answering

Mohamed Ali Souibgui, Changkyu Choi, Andrey Barsky, Kangsoo Jung, Ernest Valveny, Dimosthenis Karatzas

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We propose **DocVXQA**, a novel framework for visually self-explainable document question answering, where the goal is not only to produce accurate answers to questions but also to learn visual heatmaps that highlight critical regions, offering interpretable justifications for the model decision. To integrate explanations into the learning process, we quantitatively formulate explainability principles as explicit learning criteria. Unlike conventional relevance map methods that solely emphasize regions relevant to the answer, our context-aware DocVXQA delivers explanations that are contextually sufficient yet representation-efficient. This fosters user trust while achieving a balance between predictive performance and interpretability in document visual question answering applications. Extensive experiments, including human evaluation, provide strong evidence supporting the effectiveness of our method.

Poster