ICLR 2023 Papers

In this paper, we propose a new self-supervised method, which is called denoising masked autoencoders (DMAE), for learning certified robust classifiers of images. In DMAE, we corrupt each image by adding Gaussian noises to each pixel value and randomly masking several patches. A Transformer-based encoder-decoder model is then trained to reconstruct the original image from the corrupted one. In this learning paradigm, the encoder will learn to capture relevant semantics for the downstream tasks, which is also robust to Gaussian additive noises. We show that the pre-trained encoder can naturally be used as the base classifier in Gaussian smoothed models, where we can analytically compute the certified radius for any data point. Although the proposed method is simple, it yields significant performance improvement in downstream classification tasks. We show that the DMAE ViT-Base model, which just uses 1/10 parameters of the model developed in recent work (Carlini et al., 2022), achieves competitive or better certified accuracy in various settings. The DMAE ViT-Large model significantly surpasses all previous results, establishing a new state-of-the-art on ImageNet dataset. We further demonstrate that the pre-trained model has good transferability to the CIFAR-10 dataset, suggesting its wide adaptability. Models and code are available at https://github.com/quanlin-wu/dmae.

The critical challenge of Semi-Supervised Learning (SSL) is how to effectively leverage the limited labeled data and massive unlabeled data to improve the model's generalization performance. In this paper, we first revisit the popular pseudo-labeling methods via a unified sample weighting formulation and demonstrate the inherent quantity-quality trade-off problem of pseudo-labeling with thresholding, which may prohibit learning. To this end, we propose SoftMatch to overcome the trade-off by maintaining both high quantity and high quality of pseudo-labels during training, effectively exploiting the unlabeled data. We derive a truncated Gaussian function to weight samples based on their confidence, which can be viewed as a soft version of the confidence threshold. We further enhance the utilization of weakly-learned classes by proposing a uniform alignment approach. In experiments, SoftMatch shows substantial improvements across a wide variety of benchmarks, including image, text, and imbalanced classification.

We create a reusable Transformer, BrainBERT, for intracranial recordings bringing modern representation learning approaches to neuroscience. Much like in NLP and speech recognition, this Transformer enables classifying complex concepts, i.e., decoding neural data, with higher accuracy and with much less data by being pretrained in an unsupervised manner on a large corpus of unannotated neural recordings. Our approach generalizes to new subjects with electrodes in new positions and to unrelated tasks showing that the representations robustly disentangle the neural signal. Just like in NLP where one can study language by investigating what a language model learns, this approach opens the door to investigating the brain by what a model of the brain learns. As a first step along this path, we demonstrate a new analysis of the intrinsic dimensionality of the computations in different areas of the brain. To construct these representations, we combine a technique for producing super-resolution spectrograms of neural data with an approach designed for generating contextual representations of audio by masking. In the future, far more concepts will be decodable from neural recordings by using representation learning, potentially unlocking the brain like language models unlocked language.

Modern studies in radiograph representation learning (R$^2$L) rely on either self-supervision to encode invariant semantics or associated radiology reports to incorporate medical expertise, while the complementarity between them is barely noticed. To explore this, we formulate the self- and report-completion as two complementary objectives and present a unified framework based on masked record modeling (MRM). In practice, MRM reconstructs masked image patches and masked report tokens following a multi-task scheme to learn knowledge-enhanced semantic representations. With MRM pre-training, we obtain pre-trained models that can be well transferred to various radiography tasks. Specifically, we find that MRM offers superior performance in label-efficient fine-tuning. For instance, MRM achieves 88.5% mean AUC on CheXpert using 1% labeled data, outperforming previous R$^2$L methods with 100% labels. On NIH ChestX-ray, MRM outperforms the best performing counterpart by about 3% under small labeling ratios. Besides, MRM surpasses self- and report-supervised pre-training in identifying the pneumonia type and the pneumothorax area, sometimes by large margins.

Recent large-scale neural autoregressive sequence models have shown impressive performances on a variety of natural language generation tasks. However, their generated sequences often exhibit degenerate properties such as non-termination, undesirable repetition, and premature termination, when generated with decoding algorithms such as greedy search, beam search, top-$k$ sampling, and nucleus sampling. In this paper, we focus on the problem of non-terminating sequences resulting from an incomplete decoding algorithm. We first define an incomplete probable decoding algorithm which includes greedy search, top-$k$ sampling, and nucleus sampling, beyond the incomplete decoding algorithm originally put forward by Welleck et al. (2020). We then propose a non-monotonic self-terminating language model, which significantly relaxes the constraint of monotonically increasing termination probability in the originally proposed self-terminating language model by Welleck et al. (2020), to address the issue of non-terminating sequences when using incomplete probable decoding algorithms. We prove that our proposed model prevents non-terminating sequences when using not only incomplete probable decoding algorithms but also beam search. We empirically validate our model on sequence completion tasks with various architectures.

Though Self-supervised learning (SSL) has been widely studied as a promising technique for representation learning, it doesn't generalize well on long-tailed datasets due to the majority classes dominating the feature space. Recent work shows that the long-tailed learning performance could be boosted by sampling extra in-domain (ID) data for self-supervised training, however, large-scale ID data which can rebalance the minority classes are expensive to collect. In this paper, we propose an alternative but easy-to-use and effective solution, \textbf{C}ontrastive with \textbf{O}ut-of-distribution (OOD) data for \textbf{L}ong-\textbf{T}ail learning (COLT), which can effectively exploit OOD data to dynamically re-balance the feature space. We empirically identify the counter-intuitive usefulness of OOD samples in SSL long-tailed learning and principally design a novel SSL method. Concretely, we first localize the `\emph{head}' and `\emph{tail}' samples by assigning a tailness score to each OOD sample based on its neighborhoods in the feature space. Then, we propose an online OOD sampling strategy to dynamically re-balance the feature space. Finally, we enforce the model to be capable of distinguishing ID and OOD samples by a distribution-level supervised contrastive loss. Extensive experiments are conducted on various datasets and several state-of-the-art SSL frameworks to verify the effectiveness of the proposed method. The results show that our method significantly improves the performance of SSL on long-tailed datasets by a large margin, and even outperforms previous work which uses external ID data. Our code is available at \url{https://github.com/JianhongBai/COLT}.

Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein function or structure. Existing approaches usually pretrain protein language models on a large number of unlabeled amino acid sequences and then finetune the models with some labeled data in downstream tasks. Despite the effectiveness of sequence-based approaches, the power of pretraining on known protein structures, which are available in smaller numbers only, has not been explored for protein property prediction, though protein structures are known to be determinants of protein function. In this paper, we propose to pretrain protein representations according to their 3D structures. We first present a simple yet effective encoder to learn the geometric features of a protein. We pretrain the protein graph encoder by leveraging multiview contrastive learning and different self-prediction tasks. Experimental results on both function prediction and fold classification tasks show that our proposed pretraining methods outperform or are on par with the state-of-the-art sequence-based methods, while using much less pretraining data. Our implementation is available at https://github.com/DeepGraphLearning/GearNet.

While the empirical success of self-supervised learning (SSL) heavily relies on the usage of deep nonlinear models, existing theoretical works on SSL understanding still focus on linear ones. In this paper, we study the role of nonlinearity in the training dynamics of contrastive learning (CL) on one and two-layer nonlinear networks with homogeneous activation $h(x) = h'(x)x$. We have two major theoretical discoveries. First, the presence of nonlinearity can lead to many local optima even in 1-layer setting, each corresponding to certain patterns from the data distribution, while with linear activation, only one major pattern can be learned. This suggests that models with lots of parameters can be regarded as a \emph{brute-force} way to find these local optima induced by nonlinearity. Second, in the 2-layer case, linear activation is proven not capable of learning specialized weights into diverse patterns, demonstrating the importance of nonlinearity. In addition, for 2-layer setting, we also discover \emph{global modulation}: those local patterns discriminative from the perspective of global-level patterns are prioritized to learn, further characterizing the learning process. Simulation verifies our theoretical findings.

Pre-training representations (a.k.a. foundation models) has recently become a prevalent learning paradigm, where one first pre-trains a representation using large-scale unlabeled data, and then learns simple predictors on top of the representation using small labeled data from the downstream tasks. There are two key desiderata for the representation: label efficiency (the ability to learn an accurate classifier on top of the representation with a small amount of labeled data) and universality (usefulness across a wide range of downstream tasks). In this paper, we focus on one of the most popular instantiations of this paradigm: contrastive learning with linear probing, i.e., learning a linear predictor on the representation pre-trained by contrastive learning. We show that there exists a trade-off between the two desiderata so that one may not be able to achieve both simultaneously. Specifically, we provide analysis using a theoretical data model and show that, while more diverse pre-training data result in more diverse features for different tasks (improving universality), it puts less emphasis on task-specific features, giving rise to larger sample complexity for down-stream supervised tasks, and thus worse prediction performance. Guided by this analysis, we propose a contrastive regularization method to improve the trade-off. We validate our analysis and method empirically with systematic experiments using real-world datasets and foundation models.

Human object interaction (HOI) detection plays a crucial role in human-centric scene understanding and serves as a fundamental building block for many vision tasks. One generalizable and scalable strategy for HOI detection is to use weak supervision, learning from image-level annotations only. This is inherently challenging due to ambiguous human-object associations, large search space of detecting HOIs and highly noisy training signal. A promising strategy to address those challenges is to exploit knowledge from large-scale pretrained models (e.g., CLIP), but a direct knowledge distillation strategy does not perform well on the weakly-supervised setting. In contrast, we develop a CLIP-guided HOI representation capable of incorporating the prior knowledge at both image level and HOI instance level, and adopt a self-taught mechanism to prune incorrect human-object associations. Experimental results on HICO-DET and V-COCO show that our method outperforms the previous works by a sizable margin, showing the efficacy of our HOI representation.

Pseudo-labeling has proven to be a promising semi-supervised learning (SSL) paradigm. Existing pseudo-labeling methods commonly assume that the class distributions of training data are balanced. However, such an assumption is far from realistic scenarios and thus severely limits the performance of current pseudo-labeling methods under the context of class-imbalance. To alleviate this problem, we design a bias adaptive classifier that targets the imbalanced SSL setups. The core idea is to automatically assimilate the training bias caused by class imbalance via the bias adaptive classifier, which is composed of a novel bias attractor and the original linear classifier. The bias attractor is designed as a light-weight residual network and learned through a bi-level learning framework, which enables the bias adaptive classifier to fit imbalanced training data, while the linear classifier can provide unbiased label prediction for each class. We conduct extensive experiments under various imbalanced semi-supervised setups, and the results demonstrate that our method can be applied to different pseudo-labeling models and is superior to current state-of-the-art methods.

Part-prototype Networks (ProtoPNets) are concept-based classifiers designed to achieve the same performance as black-box models without compromising transparency. ProtoPNets compute predictions based on similarity to class-specific part-prototypes learned to recognize parts of training examples, making it easy to faithfully determine what examples are responsible for any target prediction and why. However, like other models, they are prone to picking up confounders and shortcuts from the data, thus suffering from compromised prediction accuracy and limited generalization. We propose ProtoPDebug, an effective concept-level debugger for ProtoPNets in which a human supervisor, guided by the model’s explanations, supplies feedback in the form of what part-prototypes must be forgotten or kept, and the model is fine-tuned to align with this supervision. Our experimental evaluation shows that ProtoPDebug outperforms state-of-the-art debuggers for a fraction of the annotation cost. An online experiment with laypeople confirms the simplicity of the feedback requested to the users and the effectiveness of the collected feedback for learning confounder-free part-prototypes. ProtoPDebug is a promising tool for trustworthy interactive learning in critical applications, as suggested by a preliminary evaluation on a medical decision making task.

Biological vision systems are unparalleled in their ability to learn visual representations without supervision. In machine learning, self-supervised learning (SSL) has led to major advances in forming object representations in an unsupervised fashion. Such systems learn representations invariant to augmentation operations over images, like cropping or flipping. In contrast, biological vision systems exploit the temporal structure of the visual experience during natural interactions with objects. This gives access to “augmentations” not commonly used in SSL, like watching the same object from multiple viewpoints or against different backgrounds. Here, we systematically investigate and compare the potential benefits of such time-based augmentations during natural interactions for learning object categories. Our results show that incorporating time-based augmentations achieves large performance gains over state-of-the-art image augmentations. Specifically, our analyses reveal that: 1) 3-D object manipulations drastically improve the learning of object categories; 2) viewing objects against changing backgrounds is important for learning to discard background-related information from the latent representation. Overall, we conclude that time-based augmentations during natural interactions with objects can substantially improve self-supervised learning, narrowing the gap between artificial and biological vision systems.

Traditional analyses of gradient descent show that when the largest eigenvalue of the Hessian, also known as the sharpness $S(\theta)$, is bounded by $2/\eta$, training is "stable" and the training loss decreases monotonically. Recent works, however, have observed that this assumption does not hold when training modern neural networks with full batch or large batch gradient descent. Most recently, Cohen at al. (2021) detailed two important phenomena. The first, dubbed \emph{progressive sharpening}, is that the sharpness steadily increases throughout training until it reaches the instability cutoff $2/\eta$. The second, dubbed \emph{edge of stability}, is that the sharpness hovers at $2/\eta$ for the remainder of training while the loss continues decreasing, albeit non-monotonically. We demonstrate that, far from being chaotic, the dynamics of gradient descent at the edge of stability can be captured by a cubic Taylor expansion: as the iterates diverge in direction of the top eigenvector of the Hessian due to instability, the cubic term in the local Taylor expansion of the loss function causes the curvature to decrease until stability is restored. This property, which we call \emph{self-stabilization}, is a general property of gradient descent and explains its behavior at the edge of stability. A key consequence of self-stabilization is that gradient descent at the edge of stability implicitly follows \emph{projected} gradient descent (PGD) under the constraint $S(\theta) \le 2/\eta$. Our analysis provides precise predictions for the loss, sharpness, and deviation from the PGD trajectory throughout training, which we verify both empirically in a number of standard settings and theoretically under mild conditions. Our analysis uncovers the mechanism for gradient descent's implicit bias towards stability.

Contrastive self-supervised learning methods famously produce high quality transferable representations by learning invariances to different data augmentations. Invariances established during pre-training can be interpreted as strong inductive biases. However these may or may not be helpful, depending on if they match the invariance requirements of downstream tasks or not. This has led to several attempts to learn task-specific invariances during pre-training, however, these methods are highly compute intensive and tedious to train. We introduce the notion of amortized invariance learning for contrastive self supervision. In the pre-training stage, we parameterize the feature extractor by differentiable invariance hyper-parameters that control the invariances encoded by the representation. Then, for any downstream task, both linear readout and task-specific invariance requirements can be efficiently and effectively learned by gradient-descent. We evaluate the notion of amortized invariances for contrastive learning over two different modalities: vision and audio, on two widely-used contrastive learning methods in vision: SimCLR and MoCo-v2 with popular architectures like ResNets and Vision Transformers, and SimCLR with ResNet-18 for audio. We show that our amortized features provide a reliable way to learn diverse downstream tasks with different invariance requirements, while using a single feature and avoiding task-specific pre-training. This provides an exciting perspective that opens up new horizons in the field of general purpose representation learning.

Self-Supervised Learning (SSL) is a paradigm that leverages unlabeled data for model training. Empirical studies show that SSL can achieve promising performance in distribution shift scenarios, where the downstream and training distributions differ. However, the theoretical understanding of its transferability remains limited. In this paper, we develop a theoretical framework to analyze the transferability of self-supervised contrastive learning, by investigating the impact of data augmentation on it. Our results reveal that the downstream performance of contrastive learning depends largely on the choice of data augmentation. Moreover, we show that contrastive learning fails to learn domain-invariant features, which limits its transferability. Based on these theoretical insights, we propose a novel method called Augmentation-robust Contrastive Learning (ArCL), which guarantees to learn domain-invariant features and can be easily integrated with existing contrastive learning algorithms. We conduct experiments on several datasets and show that ArCL significantly improves the transferability of contrastive learning.

Recent state-of-the-art methods in imbalanced semi-supervised learning (SSL) rely on confidence-based pseudo-labeling with consistency regularization. To obtain high-quality pseudo-labels, a high confidence threshold is typically adopted. However, it has been shown that softmax-based confidence scores in deep networks can be arbitrarily high for samples far from the training data, and thus, the pseudo-labels for even high-confidence unlabeled samples may still be unreliable. In this work, we present a new perspective of pseudo-labeling for imbalanced SSL. Without relying on model confidence, we propose to measure whether an unlabeled sample is likely to be "in-distribution''; i.e., close to the current training data. To decide whether an unlabeled sample is "in-distribution'' or "out-of-distribution'', we adopt the energy score from out-of-distribution detection literature. As training progresses and more unlabeled samples become in-distribution and contribute to training, the combined labeled and pseudo-labeled data can better approximate the true class distribution to improve the model. Experiments demonstrate that our energy-based pseudo-labeling method, InPL, albeit conceptually simple, significantly outperforms confidence-based methods on imbalanced SSL benchmarks. For example, it produces a 4-6% absolute accuracy improvement on CIFAR10-LT when the imbalance ratio is higher than 50. When combined with state-of-the-art long-tailed SSL methods, further improvements are attained. In particular, in one of the most challenging scenarios, InPL achieves a 6.9% accuracy improvement over the best competitor.

Pre-training a large transformer model on a massive amount of unlabeled data and fine-tuning it on labeled datasets for diverse downstream tasks has proven to be a successful strategy, for a variety of vision and natural language processing tasks. However, direct fine-tuning of the pre-trained model may be suboptimal if there exist large discrepancies across data domains for pre-training and fine-tuning. To tackle this issue, several previous studies have proposed further pre-training strategies, where we continue to pre-train the model on the target unlabeled dataset before fine-tuning. However, all of them solely focus on language models and we empirically find that a Vision Transformer is vulnerable to overfitting as we continue to pretrain the model on target unlabeled data. In order to tackle this limitation, we propose self-distillation as a regularization for a further pre-training stage. Specifically, we first further pre-train the initial pre-trained model on the target unlabeled data and then consider it as a teacher for self-distillation. Then we take the same initial pre-trained model as a student and enforce its hidden representations to be close to those of the teacher while optimizing the student with a masked auto-encoding objective. We empirically validate the efficacy of self-distillation on a variety of benchmark datasets for image and text classification tasks. Experimentally, we show that our proposed method outperforms all the relevant baselines. Theoretically, we analyze the proposed method with a simplified model to understand how self-distillation for further pre-training can potentially help improve the performance of the downstream tasks.

Neural volumetric representations have shown the potential that Multi-layer Perceptrons (MLPs) can be optimized with multi-view calibrated images to represent scene geometry and appearance without explicit 3D supervision. Object segmentation can enrich many downstream applications based on the learned radiance field. However, introducing hand-crafted segmentation to define regions of interest in a complex real-world scene is non-trivial and expensive as it acquires per view annotation. This paper carries out the exploration of self-supervised learning for object segmentation using NeRF for complex real-world scenes. Our framework, called NeRF with Self-supervised Object Segmentation (NeRF-SOS), couples object segmentation and neural radiance field to segment objects in any view within a scene. By proposing a novel collaborative contrastive loss in both appearance and geometry levels, NeRF-SOS encourages NeRF models to distill compact geometry-aware segmentation clusters from their density fields and the self-supervised pre-trained 2D visual features. The self-supervised object segmentation framework can be applied to various NeRF models that both lead to photo-realistic rendering results and convincing segmentation maps for both indoor and outdoor scenarios. Extensive results on the LLFF, BlendedMVS, CO3Dv2, and Tank & Temples datasets validate the effectiveness of NeRF-SOS. It consistently surpasses other 2D-based self-supervised baselines and predicts finer object masks than existing supervised counterparts.