UAI 2025 Papers

Conference on Uncertainty in Artificial Intelligence

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229papers

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Tuning Algorithmic and Architectural Hyperparameters in Graph-Based Semi-Supervised Learning with Provable Guarantees

Ally Yalei Du, Eric Huang, Dravyansh Sharma

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Graph-based semi-supervised learning is a powerful paradigm in machine learning for modeling and exploiting the underlying graph structure that captures the relationship between labeled and unlabeled data. A large number of classical as well as modern deep learning based algorithms have been proposed for this problem, often having tunable hyperparameters. We initiate a formal study of tuning algorithm hyperparameters from parameterized algorithm families for this problem. We obtain novel O(log n) pseudo-dimension upper bounds for hyperparameter selection in three classical label propagation-based algorithm families, where n is the number of nodes, implying bounds on the amount of data needed for learning provably good parameters. We further provide matching Ω(log n) pseudo-dimension lower bounds, thus asymptotically characterizing the learning-theoretic complexity of the parameter tuning problem. We extend our study to selecting architectural hyperparameters in modern graph neural networks. We bound the Rademacher complexity for tuning the self-loop weighting in recently proposed Simplified Graph Convolution (SGC) networks. We further propose a tunable architecture that interpolates graph convolutional neural networks (GCN) and graph attention networks (GAT) in every layer, and provide Rademacher complexity bounds for tuning the interpolation coefficient.

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Causal Discovery for Linear Non-Gaussian Models with Disjoint Cycles

Mathias Drton, Marina Garrote-López, Niko Nikov, Elina Robeva, Y. Samuel Wang

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The paradigm of linear structural equation modeling readily allows one to incorporate causal feedback loops in the model specification. These appear as directed cycles in the common graphical representation of the models. However, the presence of cycles entails difficulties such as the fact that models need no longer be characterized by conditional independence relations. As a result, learning cyclic causal structures remains a challenging problem. In this paper, we offer new insights on this problem in the context of linear non-Gaussian models. First, we precisely characterize when two directed graphs determine the same linear non-Gaussian model. Next, we take up a setting of cycle-disjoint graphs, for which we are able to show that simple quadratic and cubic polynomial relations among low-order moments of a non-Gaussian distribution allow one to locate source cycles. Complementing this with a strategy of decorrelating cycles and multivariate regression allows one to infer a block-topological order among the directed cycles, which leads to a consistent and computationally efficient algorithm for learning causal structures with disjoint cycles.

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Simulation-based Inference for High-dimensional Data using Surjective Sequential Neural Likelihood Estimation

Simon Dirmeier, Carlo Albert, Fernando Perez-Cruz

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Neural likelihood estimation methods for simulation-based inference can suffer from performance degradation when the modeled data is very high-dimensional or lies along a lower-dimensional manifold, which is due to the inability of the density estimator to accurately estimate a density function. We present Surjective Sequential Neural Likelihood (SSNL) estimation, a novel member in the family of methods for simulation-based inference (SBI). SSNL fits a dimensionality-reducing surjective normalizing flow model and uses it as a surrogate likelihood function, which allows for computational inference via Markov chain Monte Carlo or variational Bayes methods. Among other benefits, SSNL avoids the requirement to manually craft summary statistics for inference of high-dimensional data sets, since the lower-dimensional representation is computed simultaneously with learning the likelihood and without additional computational overhead. We evaluate SSNL on a wide variety of experiments, including two challenging real-world examples from the astrophysics and neuroscience literatures, and show that it either outperforms or is on par with state-of-the-art methods, making it an excellent off-the-shelf estimator for SBI for high-dimensional data sets.

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Nearly Optimal Differentially Private ReLU Regression

Meng Ding, Mingxi Lei, Shaowei Wang, Tianhang Zheng, Di Wang, Jinhui Xu

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In this paper, we investigate one of the most fundamental non-convex learning problems-ReLU regression-in the Differential Privacy (DP) model. Previous studies on private ReLU regression heavily rely on stringent assumptions, such as constant-bounded norms for feature vectors and labels. We relax these assumptions to a more standard setting, where data can be i.i.d. sampled from O(1)-sub-Gaussian distributions. We first show that when ε = Õ(√(1/N)) and there is some public data, it is possible to achieve an upper bound of O(d^2/N^2 ε^2) for the excess population risk in (ϵ, δ)-DP, where d is the dimension and N is the number of data samples. Moreover, we relax the requirement of ϵ and public data by proposing and analyzing a one-pass mini-batch Generalized Linear Model Perceptron algorithm (DP-MBGLMtron). Additionally, using the tracing attack argument technique, we demonstrate that the minimax rate of the estimation error for (ε, δ)-DP algorithms is lower bounded by Ω(d^2/N^2 ε^2). This shows that DP-MBGLMtron achieves the optimal utility bound up to logarithmic factors. Experiments further support our theoretical results.

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Valid Bootstraps for Network Embeddings with Applications to Network Visualisation

Emerald Dilworth, Ed Davis, Daniel John Lawson

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Quantifying uncertainty in networks is an important step in modelling relationships and interactions between entities. We consider the challenge of bootstrapping an inhomogeneous random graph when only a single observation of the network is made and the underlying data generating function is unknown. We address this problem by considering embeddings of the observed and bootstrapped network that are statistically indistinguishable. We utilise an exchangeable network test that can empirically validate bootstrap samples generated by any method. Existing methods fail this test, so we propose a principled, distribution-free network bootstrap using k-nearest neighbour smoothing, that can pass this exchangeable network test in many synthetic and real-data scenarios. We demonstrate the utility of this work in combination with the popular data visualisation method t-SNE, where uncertainty estimates from bootstrapping are used to explain whether visible structures represent real statistically sound structures.

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Cutting Through Privacy: A Hyperplane-Based Data Reconstruction Attack in Federated Learning

Francesco Diana, André Nusser, CHUAN XU, Giovanni Neglia

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Federated Learning (FL) enables collaborative training of machine learning models across distributed clients without sharing raw data, ostensibly preserving data privacy. Nevertheless, recent studies have revealed critical vulnerabilities in FL, showing that a malicious central server can manipulate model updates to reconstruct clients’ private training data. Existing data reconstruction attacks have important limitations: they often rely on assumptions about the clients’ data distribution or their efficiency significantly degrades when batch sizes exceed just a few tens of samples. In this work, we introduce a novel data reconstruction attack that overcomes these limitations. Our method leverages a new geometric perspective on fully connected layers to craft malicious model parameters, enabling the perfect recovery of arbitrarily large data batches in classification tasks without any prior knowledge of clients’ data. Through extensive experiments on both image and tabular datasets, we demonstrate that our attack outperforms existing methods and achieves perfect reconstruction of data batches two orders of magnitude larger than the state of the art.

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Calibrated Regression Against An Adversary Without Regret

Shachi Deshpande, Charles Marx, Volodymyr Kuleshov

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We are interested in probabilistic prediction in online settings in which data does not follow a probability distribution. Our work seeks to achieve two goals: (1) producing valid probabilities that accurately reflect model confidence; (2) ensuring that traditional notions of performance (e.g., high accuracy) still hold. We introduce online algorithms guaranteed to achieve these goals on arbitrary streams of data-points, including data chosen by an adversary. Specifically, our algorithms produce forecasts that are (1) calibrated i.e., an 80

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Optimal Submanifold Structure in Log-linear Models

Zhou Derun, Mahito Sugiyama

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In the modeling of discrete distributions using log-linear models, the model selection process is equivalent to imposing zero-value constraints on a subset of natural parameters, which is an established concept in information geometry. This zero-value constraint has been implicitly employed, from classic Boltzmann machines to recent many-body approximations of tensors. However, in theory, any constant value other than zero can be used for these constraints, leading to different submanifolds onto which the empirical distribution is projected, a possibility that has not been explored. Here, we investigate the asymptotic behavior of these constraint values from the perspective of information geometry. Specifically, we prove that the optimal value converges to zero as the size of the support of the empirical distribution increases, which corresponds to the size of the input tensors in the context of tensor decomposition. While our primary focus is on many-body approximation of tensors, it is straightforward to extend this analysis to a wide range of log-linear modeling applications.

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ELBO, regularized maximum likelihood, and their common one-sample approximation for training stochastic neural networks

Sina Daubener, Simon Damm, Asja Fischer

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Monte Carlo approximations are central to the training of stochastic neural networks in general, and Bayesian neural networks (BNNs) in particular. We observe that the common one-sample approximation of the standard training objective can be viewed both as maximizing the Evidence Lower Bound (ELBO) and as maximizing a regularized log-likelihood of a compound distribution. This latter approach differs from the ELBO only in the order of the logarithm and expectation, and is theoretically grounded in PAC-Bayes theory. We argue theoretically and demonstrate empirically that training with the regularized maximum likelihood increases prediction variance, enhancing performance in misspecified settings, adversarial robustness, and strengthening out-of-distribution (OOD) detection. Our findings help reconcile previous contradictions in the literature by providing a detailed analysis of how training objectives and Monte Carlo sample sizes affect uncertainty quantification in stochastic neural networks.

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Online Learning with Stochastically Partitioning Experts

Puranjay Datta, Sharayu Moharir, Jaya Prakash Champati

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We study a variant of the experts problem in which new experts are revealed over time according to a stochastic process. The experts are represented by partitions of a hypercube 𝔹 in d-dimensional Euclidean space. In each round, a point is drawn from 𝔹 in an independent and identically distributed manner using an unknown distribution. For each chosen point, we draw d orthogonal hyperplanes parallel to the d faces of 𝔹 passing through the point. The set of experts available in a round is the set of partitions of 𝔹 created by all the hyperplanes drawn up to that point. Losses are adversarial, and the performance metrics of interest include expected regret and high probability bounds on the sample-path regret. We propose a suitably adapted version of the Hedge algorithm called Hedge-G, which uses a constant learning rate and has O(√(2^d T log T)) expected regret, which is order-optimal. Further, we show that for Hedge-G, there exists a trade-off between choosing a learning rate that has optimal expected regret and a learning rate that leads to a high probability sample-path regret bound. We address this limitation by proposing AdaHedge-G, a variant of Hedge-G that uses an adaptive learning rate by tracking the loss of the experts revealed up to that round. AdaHedge-G simultaneously achieves O(log(log T)√( T log T)) expected regret and O(log T √(T log T)) sample-path regret, with probability at least 1-T^-c, where c > 0 is a constant dependent on d.

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The Relativity of Causal Knowledge

Gabriele D'Acunto, Claudio Battiloro

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Recent advances in *artificial intelligence* reveal the limits of purely predictive systems and call for a shift toward causal *and* collaborative reasoning. Drawing inspiration from the revolution of Grothendieck in mathematics, we introduce the *relativity of causal knowledge*, which posits structural causal models (SCMs) are inherently imperfect, subjective representations embedded within networks of relationships. By leveraging category theory, we arrange SCMs into a functor category and show that their observational and interventional probability measures naturally form convex structures. This result allows us to encode non-intervened SCMs with convex spaces of probability measures. Next, using sheaf theory, we construct the *network sheaf and cosheaf of causal knowledge*. These structures enable the transfer of causal knowledge across the network while incorporating interventional consistency and the perspective of the subjects, ultimately leading to the formal, mathematical definition of *relative causal knowledge*.

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Measuring IIA Violations in Similarity Choices with Bayesian Models

Hugo Sales Correa, Suryanarayana Sankagiri, Daniel R. Figueiredo, Matthias Grossglauser

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Similarity choice data occur when humans make choices among alternatives based on their similarity to a target, e.g., in the context of information retrieval and in embedding learning settings. Classical metric-based models of similarity choice assume independence of irrelevant alternatives (IIA), a property that allows for a simpler formulation. While IIA violations have been detected in many discrete choice settings, the similarity choice setting has received scant attention. This is because the target-dependent nature of the choice complicates IIA testing. We propose two statistical methods to test for IIA: a classical goodness-of-fit test and a Bayesian counterpart based on the framework of Posterior Predictive Checks (PPC). This Bayesian approach, our main technical contribution, quantifies the degree of IIA violation beyond its mere significance. We curate two datasets: one with choice sets designed to elicit IIA violations, and another with randomly generated choice sets from the same item universe. Our tests confirmed significant IIA violations on both datasets, and notably, we find a comparable degree of violation between them. Further, we devise a new PPC test for population homogeneity. Results show that the population is indeed homogenous, suggesting that the IIA violations are driven by context effects—specifically, interactions within the choice sets. These results highlight the need for new similarity choice models that account for such context effects.

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RL, but don’t do anything I wouldn’t do

Michael K. Cohen, Marcus Hutter, Yoshua Bengio, Stuart Russell

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In reinforcement learning (RL), if the agent’s reward differs from the designers’ true utility, even only rarely, the state distribution resulting from the agent’s policy can be very bad, in theory and in practice. When RL policies would devolve into undesired behavior, a common countermeasure is KL regularization to a trusted policy ("Don’t do anything I wouldn’t do"). All current cutting-edge language models are RL agents that are KL-regularized to a "base policy" that is purely predictive. Unfortunately, we demonstrate that when this base policy is a Bayesian predictive model of a trusted policy, the KL constraint is no longer reliable for controlling the behavior of an advanced RL agent. We demonstrate this theoretically using algorithmic information theory, and while systems today are too weak to exhibit this theorized failure precisely, we RL-finetune a language model and find evidence that our formal results are plausibly relevant in practice. We also propose a theoretical alternative that avoids this problem by replacing the "Don’t do anything I wouldn’t do" principle with "Don’t do anything I mightn’t do".

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Building Conformal Prediction Intervals with Approximate Message Passing

Lucas Clarte, Lenka Zdeborova

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Conformal prediction has emerged as a powerful tool for building prediction intervals that are valid in a distribution-free way. However, its evaluation may be computationally costly, especially in the high-dimensional setting where the dimensionality and sample sizes are both large and of comparable magnitudes. To address this challenge in the context of generalized linear regression, we propose a novel algorithm based on Approximate Message Passing (AMP) to accelerate the computation of prediction intervals using full conformal prediction, by approximating the computation of conformity scores. Our work bridges a gap between modern uncertainty quantification techniques and tools for high-dimensional problems involving the AMP algorithm. We evaluate our method on both synthetic and real data, and show that it produces prediction intervals that are close to the baseline methods, while being orders of magnitude faster. Additionally, in the high-dimensional limit and under assumptions on the data distribution, the conformity scores computed by AMP converge to the one computed exactly, which allows theoretical study and benchmarking of conformal methods in high dimensions.

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Optimal Transport for Probabilistic Circuits

Adrian Ciotinga, YooJung Choi

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We introduce a novel optimal transport framework for probabilistic circuits (PCs). While it has been shown recently that divergences between distributions represented as certain classes of PCs can be computed tractably, to the best of our knowledge, there is no existing approach to compute the Wasserstein distance between probability distributions given by PCs. We propose a Wasserstein-type distance that restricts the coupling measure of the associated optimal transport problem to be a probabilistic circuit. We then develop an algorithm for computing this distance by solving a series of small linear programs and derive the circuit conditions under which this is tractable. Furthermore, we show that we can easily retrieve the optimal transport plan between the PCs from the solutions to these linear programs. Lastly, we study the empirical Wasserstein distance between a PC and a dataset, and show that we can estimate the PC parameters to minimize this distance through an efficient iterative algorithm.

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Well-Defined Function-Space Variational Inference in Bayesian Neural Networks via Regularized KL-Divergence

Tristan Cinquin, Robert Bamler

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Bayesian neural networks (BNN) promise to combine the predictive performance of neural networks with principled uncertainty modeling crucial for safety-critical systems and decision making. However, posterior uncertainties depend on the choice of prior, and finding informative priors in weight-space has proven difficult. This has motivated variational inference (VI) methods that pose priors directly on the function represented by the BNN rather than on weights. In this paper, we address a fundamental issue with such function-space VI approaches pointed out by Burt et al. (2020), who showed that the objective function (ELBO) is negative infinite for most priors of interest. Our solution builds on generalized VI with the regularized KL divergence and is, to the best of our knowledge, the first well-defined variational objective for inference in BNNs with Gaussian process (GP) priors. Experiments show that our method successfully incorporates the properties specified by the GP prior, and that it provides competitive uncertainty estimates for regression, classification and out-of-distribution detection compared to BNN baselines with both function and weight-space priors.

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Selective Blocking for Message-Passing Neural Networks on Heterophilic Graphs

Yoonhyuk Choi, Taewook Ko, Jiho Choi, Chong-Kwon Kim

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Graph Neural Networks (GNNs) thrive on message passing (MP) but are vulnerable when the graph carries many heterophilic or misclassified edges. Prior analyses suggest that signed propagation can mitigate over-smoothing under low edge-error rates, yet they implicitly assume perfect edge labels and the presence of self-loops. We revisit this setting and show that, under high edge uncertainty, propagating any information may harm node separability even with signed weights. Our key insight is to decide not to propagate along uncertain edges adaptively. Concretely, we intentionally omit self-loops to isolate pure neighbor influence for a clearer theoretical analysis, adopt a row-stochastic (asymmetric) operator that matches the Markov-chain view of MP and simplifies spectral-radius proofs, and dynamically estimate the local homophily b_i and edge-classification error e_t during training via an EM procedure. We prove that our selective blocking yields a sub-stochastic propagation matrix whose joint spectral radius exceeds that of signed GNNs under high e_t, guaranteeing reduced over-smoothing, and we supply a lemma showing that class-discriminative signals survive even when the operator is rank-deficient. Extensive experiments on seven homophilic and heterophilic benchmarks confirm that the proposed adaptive blocking outperforms strong baselines.

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Moment Alignment: Unifying Gradient and Hessian Matching for Domain Generalization

Yuen Chen, Haozhe Si, Guojun Zhang, Han Zhao

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Domain generalization (DG) seeks to develop models that generalize well to unseen target domains, addressing distribution shifts in real-world applications. One line of research in DG focuses on aligning domain-level gradients and Hessians to enhance generalization. However, existing methods are computationally inefficient and the underlying principles of these approaches are not well understood. In this paper, we develop a theory of moment alignment for DG. Grounded in transfer measures, a principled framework for quantifying generalizability between domains, we prove that aligning derivatives across domains improves transfer measures. Moment alignment provides a unifying understanding of Invariant Risk Minimization, gradient matching, and Hessian matching, three previously disconnected approaches. We further establish the duality between feature moments and derivatives of the classifier head. Building upon our theory, we introduce Closed-Form Moment Alignment (CMA), a novel DG algorithm that aligns domain-level gradients and Hessians in closed-form. Our method overcomes the computational inefficiencies of existing gradient and Hessian-based techniques by eliminating the need for repeated backpropagation or sampling-based Hessian estimation. We validate our theory and algorithm through quantitative and qualitative experiments.

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NRFlow: Towards Noise-Robust Generative Modeling via High-Order Mechanism

Bo Chen, Chengyue Gong, Xiaoyu Li, Yingyu Liang, Zhizhou Sha, Zhenmei Shi, Zhao Song, Mingda Wan, Xugang Ye

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Flow-based generative models have shown promise in various machine learning applications, but they often face challenges in handling noise and ensuring robustness in trajectory estimation. In this work, we propose NRFlow, a novel extension to flow-based generative modeling that incorporates second-order dynamics through acceleration fields. We develop a comprehensive theoretical framework to analyze the regularization effects of high-order terms and derive noise robustness guarantees. Our method leverages a two-part loss function to simultaneously train first-order velocity fields and high-order acceleration fields, enhancing both smoothness and stability in learned transport trajectories. These results highlight the potential of high-order flow matching for robust generative modeling in complex and noisy environments.

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Tuning-Free Coreset Markov Chain Monte Carlo via Hot DoG

Naitong Chen, Jonathan H. Huggins, Trevor Campbell

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A Bayesian coreset is a small, weighted subset of a data set that replaces the full data during inference to reduce computational cost. The state-of-the-art coreset construction algorithm, Coreset Markov chain Monte Carlo (Coreset MCMC), uses draws from an adaptive Markov chain targeting the coreset posterior to train the coreset weights via stochastic gradient optimization. However, the quality of the constructed coreset, and thus the quality of its posterior approximation, is sensitive to the stochastic optimization learning rate. In this work, we propose a learning-rate-free stochastic gradient optimization procedure, Hot-start Distance over Gradient (Hot DoG), for training coreset weights in Coreset MCMC without user tuning effort. We provide a theoretical analysis of the convergence of the coreset weights produced by Hot DoG. We also provide empirical results demonstrate that Hot DoG provides higher quality posterior approximations than other learning-rate-free stochastic gradient methods, and performs competitively to optimally-tuned ADAM.

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