NeurIPS 2023 Papers

Non-contrastive SSL methods like BYOL and SimSiam rely on asymmetric predictor networks to avoid representational collapse without negative samples. Yet, how predictor networks facilitate stable learning is not fully understood. While previous theoretical analyses assumed Euclidean losses, most practical implementations rely on cosine similarity. To gain further theoretical insight into non-contrastive SSL, we analytically study learning dynamics in conjunction with Euclidean and cosine similarity in the eigenspace of closed-form linear predictor networks. We show that both avoid collapse through implicit variance regularization albeit through different dynamical mechanisms. Moreover, we find that the eigenvalues act as effective learning rate multipliers and propose a family of isotropic loss functions (IsoLoss) that equalize convergence rates across eigenmodes. Empirically, IsoLoss speeds up the initial learning dynamics and increases robustness, thereby allowing us to dispense with the EMA target network typically used with non-contrastive methods. Our analysis sheds light on the variance regularization mechanisms of non-contrastive SSL and lays the theoretical grounds for crafting novel loss functions that shape the learning dynamics of the predictor's spectrum.

Interpreting time series models is uniquely challenging because it requires identifying both the location of time series signals that drive model predictions and their matching to an interpretable temporal pattern. While explainers from other modalities can be applied to time series, their inductive biases do not transfer well to the inherently challenging interpretation of time series. We present TimeX, a time series consistency model for training explainers. TimeX trains an interpretable surrogate to mimic the behavior of a pretrained time series model. It addresses the issue of model faithfulness by introducing model behavior consistency, a novel formulation that preserves relations in the latent space induced by the pretrained model with relations in the latent space induced by TimeX. TimeX provides discrete attribution maps and, unlike existing interpretability methods, it learns a latent space of explanations that can be used in various ways, such as to provide landmarks to visually aggregate similar explanations and easily recognize temporal patterns. We evaluate TimeX on eight synthetic and real-world datasets and compare its performance against state-of-the-art interpretability methods. We also conduct case studies using physiological time series. Quantitative evaluations demonstrate that TimeX achieves the highest or second-highest performance in every metric compared to baselines across all datasets. Through case studies, we show that the novel components of TimeX show potential for training faithful, interpretable models that capture the behavior of pretrained time series models.

Establishing correspondence between images or scenes is a significant challenge in computer vision, especially given occlusions, viewpoint changes, and varying object appearances. In this paper, we present Siamese Masked Autoencoders (SiamMAE), a simple extension of Masked Autoencoders (MAE) for learning visual correspondence from videos. SiamMAE operates on pairs of randomly sampled video frames and asymmetrically masks them. These frames are processed independently by an encoder network, and a decoder composed of a sequence of cross-attention layers is tasked with predicting the missing patches in the future frame. By masking a large fraction (95%) of patches in the future frame while leaving the past frame unchanged, SiamMAE encourages the network to focus on object motion and learn object-centric representations. Despite its conceptual simplicity, features learned via SiamMAE outperform state-of-the-art self-supervised methods on video object segmentation, pose keypoint propagation, and semantic part propagation tasks. SiamMAE achieves competitive results without relying on data augmentation, handcrafted tracking-based pretext tasks, or other techniques to prevent representational collapse.

Recently, artificial intelligence for drug discovery has raised increasing interest in both machine learning and chemistry domains. The fundamental building block for drug discovery is molecule geometry and thus, the molecule's geometrical representation is the main bottleneck to better utilize machine learning techniques for drug discovery. In this work, we propose a pretraining method for molecule joint auto-encoding (MoleculeJAE). MoleculeJAE can learn both the 2D bond (topology) and 3D conformation (geometry) information, and a diffusion process model is applied to mimic the augmented trajectories of such two modalities, based on which, MoleculeJAE will learn the inherent chemical structure in a self-supervised manner. Thus, the pretrained geometrical representation in MoleculeJAE is expected to benefit downstream geometry-related tasks. Empirically, MoleculeJAE proves its effectiveness by reaching state-of-the-art performance on 15 out of 20 tasks by comparing it with 12 competitive baselines.

Bases have become an integral part of modern deep learning-based models for time series forecasting due to their ability to act as feature extractors or future references. To be effective, a basis must be tailored to the specific set of time series data and exhibit distinct correlation with each time series within the set. However, current state-of-the-art methods are limited in their ability to satisfy both of these requirements simultaneously. To address this challenge, we propose BasisFormer, an end-to-end time series forecasting architecture that leverages learnable and interpretable bases. This architecture comprises three components: First, we acquire bases through adaptive self-supervised learning, which treats the historical and future sections of the time series as two distinct views and employs contrastive learning. Next, we design a Coef module that calculates the similarity coefficients between the time series and bases in the historical view via bidirectional cross-attention. Finally, we present a Forecast module that selects and consolidates the bases in the future view based on the similarity coefficients, resulting in accurate future predictions. Through extensive experiments on six datasets, we demonstrate that BasisFormer outperforms previous state-of-the-art methods by 11.04% and 15.78% respectively for univariate and multivariate forecasting tasks. Code is available at: https://github.com/nzl5116190/Basisformer.

Data pruning, which aims to downsize a large training set into a small informative subset, is crucial for reducing the enormous computational costs of modern deep learning. Though large-scale data collections invariably contain annotation noise and numerous robust learning methods have been developed, data pruning for the noise-robust learning scenario has received little attention. With state-of-the-art Re-labeling methods that self-correct erroneous labels while training, it is challenging to identify which subset induces the most accurate re-labeling of erroneous labels in the entire training set. In this paper, we formalize the problem of data pruning with re-labeling. We first show that the likelihood of a training example being correctly re-labeled is proportional to the prediction confidence of its neighborhood in the subset. Therefore, we propose a novel data pruning algorithm, Prune4Rel, that finds a subset maximizing the total neighborhood confidence of all training examples, thereby maximizing the re-labeling accuracy and generalization performance. Extensive experiments on four real and one synthetic noisy datasets show that Prune4Rel outperforms the baselines with Re-labeling models by up to 9.1% as well as those with a standard model by up to 21.6%.

Obtaining large pre-trained models that can be fine-tuned to new tasks with limited annotated samples has remained an open challenge for medical imaging data. While pre-trained networks on ImageNet and vision-language foundation models trained on web-scale data are the prevailing approaches, their effectiveness on medical tasks is limited due to the significant domain shift between natural and medical images. To bridge this gap, we introduce LVM-Med, the first family of deep networks trained on large-scale medical datasets. We have collected approximately 1.3 million medical images from 55 publicly available datasets, covering a large number of organs and modalities such as CT, MRI, X-ray, and Ultrasound. We benchmark several state-of-the-art self-supervised algorithms on this dataset and propose a novel self-supervised contrastive learning algorithm using a graph-matching formulation. The proposed approach makes three contributions: (i) it integrates prior pair-wise image similarity metrics based on local and global information; (ii) it captures the structural constraints of feature embeddings through a loss function constructed through a combinatorial graph-matching objective, and (iii) it can be trained efficiently end-to-end using modern gradient-estimation techniques for black-box solvers. We thoroughly evaluate the proposed LVM-Med on 15 downstream medical tasks ranging from segmentation and classification to object detection, and both for the in and out-of-distribution settings. LVM-Med empirically outperforms a number of state-of-the-art supervised, self-supervised, and foundation models. For challenging tasks such as Brain Tumor Classification or Diabetic Retinopathy Grading, LVM-Med improves previous vision-language models trained on 1 billion masks by 6-7% while using only a ResNet-50.

Graph-based semi-supervised learning (GSSL) serves as a powerful tool to model the underlying manifold structures of samples in high-dimensional spaces. It involves two phases: constructing an affinity graph from available data and inferring labels for unlabeled nodes on this graph. While numerous algorithms have been developed for label inference, the crucial graph construction phase has received comparatively less attention, despite its significant influence on the subsequent phase. In this paper, we present an optimal asymmetric graph structure for the label inference phase with theoretical motivations. Unlike existing graph construction methods, we differentiate the distinct roles that labeled nodes and unlabeled nodes could play. Accordingly, we design an efficient block-wise graph learning algorithm with a global convergence guarantee. Other benefits induced by our method, such as enhanced robustness to noisy node features, are explored as well. Finally, we perform extensive experiments on synthetic and real-world datasets to demonstrate its superiority to the state-of-the-art graph construction methods in GSSL.

Self-supervised learning (SSL) has great potential for molecular representation learning given the complexity of molecular graphs, the large amounts of unlabelled data available, the considerable cost of obtaining labels experimentally, and the hence often only small training datasets. The importance of the topic is reflected in the variety of paradigms and architectures that have been investigated recently, most focus on designing views for contrastive learning. In this paper, we study SSL based on persistent homology (PH), a mathematical tool for modeling topological features of data that persist across multiple scales. It has several unique features which particularly suit SSL, naturally offering: different views of the data, stability in terms of distance preservation, and the opportunity to flexibly incorporate domain knowledge. We (1) investigate an autoencoder, which shows the general representational power of PH, and (2) propose a contrastive loss that complements existing approaches. We rigorously evaluate our approach for molecular property prediction and demonstrate its particular features in improving the embedding space: after SSL, the representations are better and offer considerably more predictive power than the baselines over different probing tasks; our loss increases baseline performance, sometimes largely; and we often obtain substantial improvements over very small datasets, a common scenario in practice.

Self-consistent Field (SCF) equation is a type of nonlinear eigenvalue problem in which the matrix to be eigen-decomposed is a function of its own eigenvectors. It is of great significance in computational science for its connection to the Schrödinger equation. Traditional fixed-point iteration methods for solving such equations suffer from non-convergence issues. In this work, we present a novel perspective on such SCF equations as a principal component analysis (PCA) for non-stationary time series, in which a distribution and its own top principal components are mutually updated over time, and the equilibrium state of the model corresponds to the solution of the SCF equations. By the new perspective, online PCA techniques are able to engage in so as to enhance the convergence of the model towards the equilibrium state, acting as a new set of tools for converging the SCF equations. With several numerical adaptations, we then develop a new algorithm for converging the SCF equation, and demonstrated its high convergence capacity with experiments on both synthesized and real electronic structure scenarios.

Humans learn powerful representations of objects and scenes by observing how they evolve over time. Yet, outside of specific tasks that require explicit temporal understanding, static image pretraining remains the dominant paradigm for learning visual foundation models. We question this mismatch, and ask whether video pretraining can yield visual representations that bear the hallmarks of human perception: generalisation across tasks, robustness to perturbations, and consistency with human judgements. To that end we propose a novel procedure for curating videos, and develop a contrastive framework which learns from the complex transformations therein. This simple paradigm for distilling knowledge from videos, called VITO, yields general representations that far outperform prior video pretraining methods on image understanding tasks, and image pretraining methods on video understanding tasks. Moreover, VITO representations are significantly more robust to natural and synthetic deformations than image-, video-, and adversarially-trained ones. Finally, VITO’s predictions are strongly aligned with human judgements, surpassing models that were specifically trained for that purpose. Together, these results suggest that video pretraining could be a simple way of learning unified, robust, and human-aligned representations of the visual world.

Neural algorithmic reasoning is an emerging area of machine learning focusing on building models that can imitate the execution of classic algorithms, such as sorting, shortest paths, etc. One of the main challenges is to learn algorithms that are able to generalize to out-of-distribution data, in particular with significantly larger input sizes. Recent work on this problem has demonstrated the advantages of learning algorithms step-by-step, giving models access to all intermediate steps of the original algorithm. In this work, we instead focus on learning neural algorithmic reasoning only from the input-output pairs without appealing to the intermediate supervision. We propose simple but effective architectural improvements and also build a self-supervised objective that can regularise intermediate computations of the model without access to the algorithm trajectory. We demonstrate that our approach is competitive to its trajectory-supervised counterpart on tasks from the CLRS Algorithmic Reasoning Benchmark and achieves new state-of-the-art results for several problems, including sorting, where we obtain significant improvements. Thus, learning without intermediate supervision is a promising direction for further research on neural reasoners.

With the rapidly increasing demand for oriented object detection, e.g. in autonomous driving and remote sensing, the recently proposed paradigm involving weakly-supervised detector H2RBox for learning rotated box (RBox) from the more readily-available horizontal box (HBox) has shown promise. This paper presents H2RBox-v2, to further bridge the gap between HBox-supervised and RBox-supervised oriented object detection. Specifically, we propose to leverage the reflection symmetry via flip and rotate consistencies, using a weakly-supervised network branch similar to H2RBox, together with a novel self-supervised branch that learns orientations from the symmetry inherent in visual objects. The detector is further stabilized and enhanced by practical techniques to cope with peripheral issues e.g. angular periodicity. To our best knowledge, H2RBox-v2 is the first symmetry-aware self-supervised paradigm for oriented object detection. In particular, our method shows less susceptibility to low-quality annotation and insufficient training data compared to H2RBox. Specifically, H2RBox-v2 achieves very close performance to a rotation annotation trained counterpart -- Rotated FCOS: 1) DOTA-v1.0/1.5/2.0: 72.31%/64.76%/50.33% vs. 72.44%/64.53%/51.77%; 2) HRSC: 89.66% vs. 88.99%; 3) FAIR1M: 42.27% vs. 41.25%.

Prior theoretical and empirical works have established that semi-supervised learning algorithms can leverage the unlabeled data to improve over the labeled sample complexity of supervised learning (SL) algorithms. However, existing theoretical work focuses on regimes where the unlabeled data is sufficient to learn a good decision boundary using unsupervised learning (UL) alone. This begs the question: Can SSL algorithms simultaneously improve upon both UL and SL? To this end, we derive a tight lower bound for 2-Gaussian mixture models that explicitly depends on the labeled and the unlabeled dataset size as well as the signal-to-noise ratio of the mixture distribution. Surprisingly, our result implies that no SSL algorithm improves upon the minimax-optimal statistical error rates of SL or UL algorithms for these distributions. Nevertheless, in our real-world experiments, SSL algorithms can often outperform UL and SL algorithms. In summary, our work suggests that while it is possible to prove the performance gains of SSL algorithms, this would require careful tracking of constants in the theoretical analysis.

Self-training and contrastive learning have emerged as leading techniques for incorporating unlabeled data, both under distribution shift (unsupervised domain adaptation) and when it is absent (semi-supervised learning). However, despite the popularity and compatibility of these techniques, their efficacy in combination remains surprisingly unexplored. In this paper, we first undertake a systematic empirical investigation of this combination, finding (i) that in domain adaptation settings, self-training and contrastive learning offer significant complementary gains; and (ii) that in semi-supervised learning settings, surprisingly, the benefits are not synergistic. Across eight distribution shift datasets (e.g., BREEDs, WILDS), we demonstrate that the combined method obtains 3--8\% higher accuracy than either approach independently. Finally, we theoretically analyze these techniques in a simplified model of distribution shift demonstrating scenarios under which the features produced by contrastive learning can yield a good initialization for self-training to further amplify gains and achieve optimal performance, even when either method alone would fail.

Model-free reinforcement learning algorithms have exhibited great potential in solving single-task sequential decision-making problems with high-dimensional observations and long horizons, but are known to be hard to generalize across tasks. Model-based RL, on the other hand, learns task-agnostic models of the world that naturally enables transfer across different reward functions, but struggles to scale to complex environments due to the compounding error. To get the best of both worlds, we propose a self-supervised reinforcement learning method that enables the transfer of behaviors across tasks with different rewards, while circumventing the challenges of model-based RL. In particular, we show self-supervised pre-training of model-free reinforcement learning with a number of random features as rewards allows implicit modeling of long-horizon environment dynamics. Then, planning techniques like model-predictive control using these implicit models enable fast adaptation to problems with new reward functions. Our method is self-supervised in that it can be trained on offline datasets without reward labels, but can then be quickly deployed on new tasks. We validate that our proposed method enables transfer across tasks on a variety of manipulation and locomotion domains in simulation, opening the door to generalist decision-making agents.

Exploration and reward specification are fundamental and intertwined challenges for reinforcement learning. Solving sequential decision making tasks with a non-trivial element of exploration requires either specifying carefully designed reward functions or relying on indiscriminate, novelty seeking exploration bonuses. Human supervisors can provide effective guidance in the loop to direct the exploration process, but prior methods to leverage this guidance require constant synchronous high-quality human feedback, which is expensive and impractical to obtain. In this work, we propose a technique - Human Guided Exploration (HUGE), that is able to leverage low-quality feedback from non-expert users, which is infrequent, asynchronous and noisy, to guide exploration for reinforcement learning, without requiring careful reward specification. The key idea is to separate the challenges of directed exploration and policy learning - human feedback is used to direct exploration, while self-supervised policy learning is used to independently learn unbiased behaviors from the collected data. We show that this procedure can leverage noisy, asynchronous human feedback to learn tasks with no hand-crafted reward design or exploration bonuses. We show that HUGE is able to learn a variety of challenging multi-stage robotic navigation and manipulation tasks in simulation using crowdsourced feedback from non-expert users. Moreover, this paradigm can be scaled to learning directly on real-world robots.

Semi-supervised learning (SSL) has been a fundamental challenge in machine learning for decades. The primary family of SSL algorithms, known as pseudo-labeling, involves assigning pseudo-labels to confident unlabeled instances and incorporating them into the training set. Therefore, the selection criteria of confident instances are crucial to the success of SSL. Recently, there has been growing interest in the development of SSL methods that use dynamic or adaptive thresholds. Yet, these methods typically apply the same threshold to all samples, or use class-dependent thresholds for instances belonging to a certain class, while neglecting instance-level information. In this paper, we propose the study of instance-dependent thresholds, which has the highest degree of freedom compared with existing methods. Specifically, we devise a novel instance-dependent threshold function for all unlabeled instances by utilizing their instance-level ambiguity and the instance-dependent error rates of pseudo-labels, so instances that are more likely to have incorrect pseudo-labels will have higher thresholds. Furthermore, we demonstrate that our instance-dependent threshold function provides a bounded probabilistic guarantee for the correctness of the pseudo-labels it assigns.

In this paper, we introduce self-distillation and online clustering for self-supervised speech representation learning (DinoSR) which combines masked language modeling, self-distillation, and online clustering. We show that these concepts complement each other and result in a strong representation learning model for speech. DinoSR first extracts contextualized embeddings from the input audio with a teacher network, then runs an online clustering system on the embeddings to yield a machine-discovered phone inventory, and finally uses the discretized tokens to guide a student network. We show that DinoSR surpasses previous state-of-the-art performance in several downstream tasks, and provide a detailed analysis of the model and the learned discrete units.