ICML 2025 Papers

International Conference on Machine Learning

Decision breakdown

3,342papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    1213.6%
  • Spotlight
    2256.7%
  • Poster
    2,99689.6%

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Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling

Xiangxin Zhou, Mingyu Li, Yi Xiao, Jiahan Li, Dongyu Xue, Zaixiang Zheng, Jianzhu Ma, Quanquan Gu

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Cyclic peptides offer inherent advantages in pharmaceuticals. For example, cyclic peptides are more resistant to enzymatic hydrolysis compared to linear peptides and usually exhibit excellent stability and affinity. Although deep generative models have achieved great success in linear peptide design, several challenges prevent the development of computational methods for designing diverse types of cyclic peptides. These challenges include the scarcity of 3D structural data on target proteins and associated cyclic peptide ligands, the geometric constraints that cyclization imposes, and the involvement of non-canonical amino acids in cyclization. To address the above challenges, we introduce CpSDE, which consists of two key components: AtomSDE, a generative structure prediction model based on harmonic SDE, and ResRouter, a residue type predictor. Utilizing a routed sampling algorithm that alternates between these two models to iteratively update sequences and structures, CpSDE facilitates the generation of cyclic peptides. By employing explicit all-atom and bond modeling, CpSDE overcomes existing data limitations and is proficient in designing a wide variety of cyclic peptides. Our experimental results demonstrate that the cyclic peptides designed by our method exhibit reliable stability and affinity.

Poster
Can Diffusion Models Learn Hidden Inter-Feature Rules Behind Images?

Yujin Han, Andi Han, Wei Huang, Chaochao Lu, Difan Zou

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Despite the remarkable success of diffusion models (DMs) in data generation, they exhibit specific failure cases with unsatisfactory outputs. We focus on one such limitation: the ability of DMs to learn hidden rules between image features. Specifically, for image data with dependent features ($\mathbf{x}$) and ($\mathbf{y}$) (e.g., the height of the sun ($\mathbf{x}$) and the length of the shadow ($\mathbf{y}$)), we investigate whether DMs can accurately capture the inter-feature rule ($p(\mathbf{y}|\mathbf{x})$). Empirical evaluations on mainstream DMs (e.g., Stable Diffusion 3.5) reveal consistent failures, such as inconsistent lighting-shadow relationships and mismatched object-mirror reflections. Inspired by these findings, we design four synthetic tasks with strongly correlated features to assess DMs' rule-learning abilities. Extensive experiments show that while DMs can identify coarse-grained rules, they struggle with fine-grained ones. Our theoretical analysis demonstrates that DMs trained via denoising score matching (DSM) exhibit constant errors in learning hidden rules, as the DSM objective is not compatible with rule conformity. To mitigate this, we introduce a common technique - incorporating additional classifier guidance during sampling, which achieves (limited) improvements. Our analysis reveals that the subtle signals of fine-grained rules are challenging for the classifier to capture, providing insights for future exploration.

Poster
MuLan: Adapting Multilingual Diffusion Models for Hundreds of Languages with Negligible Cost

Sen Xing, Muyan Zhong, Zeqiang Lai, Liangchen Li, Jiawen Liu, Yaohui Wang, Jifeng Dai, Wenhai Wang

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In this work, we explore a cost-effective framework for multilingual image generation. We find that, unlike models tuned on high-quality images with multilingual annotations, leveraging text encoders pre-trained on widely available, noisy Internet image-text pairs significantly enhances data efficiency in text-to-image (T2I) generation across multiple languages. Based on this insight, we introduce MuLan, Multi-Language adapter, a lightweight language adapter with fewer than 20M parameters, trained alongside a frozen text encoder and image diffusion model. Compared to previous multilingual T2I models, this framework offers: (1) Cost efficiency. Using readily accessible English data and off-the-shelf multilingual text encoders minimizes the training cost; (2) High performance. Achieving comparable generation capabilities in over 110 languages with CLIP similarity scores nearly matching those in English (39.57 for English vs. 39.61 for other languages); and (3) Broad applicability. Seamlessly integrating with compatible community tools like LoRA, LCM, ControlNet, and IP-Adapter, expanding its potential use cases.

Poster
Vulnerability-Aware Alignment: Mitigating Uneven Forgetting in Harmful Fine-Tuning

Liang Chen, Xueting Han, Li Shen, Jing Bai, Kam-Fai Wong

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Harmful fine-tuning (HFT), performed directly on open-source LLMs or through Fine-tuning-as-a-Service, breaks safety alignment and poses significant threats. Existing methods aim to mitigate HFT risks by learning robust representation on alignment data or making harmful data unlearnable, but they treat each data sample equally, leaving data vulnerability patterns understudied. In this work, we reveal that certain subsets of alignment data are consistently more prone to forgetting during HFT across different fine-tuning tasks and exhibit lower robustness compared to other subsets. Inspired by these findings, we propose Vulnerability-Aware Alignment (VAA), which calculates data vulnerability, partitions data into "vulnerable" and "invulnerable" groups, and encourages balanced learning using a group distributionally robust optimization (Group DRO) framework. Specifically, VAA learns an adversarial sampler that samples examples from the currently underperforming group and then applies group-dependent adversarial perturbations to the data during training, aiming to encourage a balanced learning process across groups. Experiments across four fine-tuning tasks demonstrate that VAA significantly reduces harmful scores while preserving downstream task performance, outperforming state-of-the-art baselines.

Poster
Explaining the role of Intrinsic Dimensionality in Adversarial Training

Enes Altinisik, Safa Messaoud, Husrev Taha Sencar, Hassan Sajjad, Sanjay Chawla

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Adversarial Training (AT) impacts different architectures in distinct ways: vision models gain robustness but face reduced generalization, encoder-based models exhibit limited robustness improvements with minimal generalization loss, and recent work in latent-space adversarial training demonstrates that decoder-based models achieve improved robustness by applying AT across multiple layers. We provide the first explanation for these trends by leveraging the manifold conjecture: off-manifold adversarial examples (AEs) enhance robustness, while on-manifold AEs improve generalization. We show that vision and decoder-based models exhibit low intrinsic dimensionality in earlier layers (favoring off-manifold AEs), whereas encoder-based models do so in later layers (favoring on-manifold AEs). Exploiting this property, we introduce SMAAT, which improves the scalability of AT for encoder-based models by perturbing the layer with the lowest intrinsic dimensionality. This reduces the projected gradient descent (PGD) chain length required for AE generation, cutting GPU time by 25–33% while significantly boosting robustness. We validate SMAAT across multiple tasks, including text generation, sentiment classification, safety filtering, and retrieval augmented generation setups, demonstrating superior robustness with comparable generalization to standard training.

Poster
Connecting Thompson Sampling and UCB: Towards More Efficient Trade-offs Between Privacy and Regret

Bingshan Hu, ZHIMING HUANG, Tianyue H. Zhang, Mathias Lécuyer, Nidhi Hegde

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We address differentially private stochastic bandit problems by leveraging Thompson Sampling with Gaussian priors and Gaussian differential privacy (GDP). We propose DP-TS-UCB, a novel parametrized private algorithm that enables trading off privacy and regret. DP-TS-UCB satisfies $ \tilde{O} \left(T^{0.25(1-\alpha)}\right)$-GDP and achieves $O \left(K\ln^{\alpha+1}(T)/\Delta \right)$ regret bounds, where $K$ is the number of arms, $ \Delta$ is the sub-optimality gap, $T$ is the learning horizon, and $\alpha \in [0,1]$ controls the trade-off between privacy and regret. Theoretically, DP-TS-UCB relies on anti-concentration bounds for the Gaussian distributions, linking the exploration mechanisms of Thompson Sampling and Upper Confidence Bound, which may be of independent research interest.

Poster
Elucidating the design space of language models for image generation

Xuantong LIU, Shaozhe Hao, Xianbiao Qi, Tianyang Hu, Jun Wang, Rong Xiao, Yuan Yao

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The success of large language models (LLMs) in text generation has inspired their application to image generation. However, existing methods either rely on specialized designs with inductive biases or adopt LLMs without fully exploring their potential in vision tasks. In this work, we systematically investigate the design space of LLMs for image generation and demonstrate that LLMs can achieve near state-of-the-art performance without domain-specific designs, simply by making proper choices in tokenization methods, modeling approaches, scan patterns, vocabulary design, and sampling strategies. We further analyze autoregressive models' learning and scaling behavior, revealing how larger models effectively capture more useful information than the smaller ones. Additionally, we explore the inherent differences between text and image modalities, highlighting the potential of LLMs across domains. The exploration provides valuable insights to inspire more effective designs when applying LLMs to other domains. With extensive experiments, our proposed model, **ELM** achieves an FID of 1.54 on 256$\times$256 ImageNet and an FID of 3.29 on 512$\times$512 ImageNet, demonstrating the powerful generative potential of LLMs in vision tasks.

Poster
Core Knowledge Deficits in Multi-Modal Language Models

Yijiang Li, Qingying Gao, Tianwei Zhao, Bingyang Wang, Haoran Sun, Haiyun Lyu, Robert D. Hawkins, Nuno Vasconcelos, Tal Golan, Dezhi Luo, Hokin Deng

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While Multi-modal Large Language Models (MLLMs) demonstrate impressive abilities over high-level perception and reasoning, their robustness in the wild remains limited, often falling short on tasks that are intuitive and effortless for humans. We examine the hypothesis that these deficiencies stem from the absence of core knowledge—rudimentary cognitive abilities innate to humans from early childhood. To explore the core knowledge representation in MLLMs, we introduce CoreCognition, a large-scale benchmark encompassing 12 core knowledge concepts grounded in developmental cognitive science. We evaluate 230 models with 11 different prompts, leading to a total of 2,530 data points for analysis. Our experiments uncover four key findings, collectively demonstrating core knowledge deficits in MLLMs: they consistently underperform and show reduced, or even absent, scalability on low-level abilities relative to high-level ones. Finally, we propose Concept Hacking, a novel controlled evaluation method that reveals MLLMs fail to progress toward genuine core knowledge understanding, but instead rely on shortcut learning as they scale.

Poster
QUTE: Quantifying Uncertainty in TinyML models with Early-exit-assisted ensembles for model-monitoring

Nikhil Pratap Ghanathe, Steven J E Wilton

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Uncertainty quantification (UQ) provides a resource-efficient solution for on-device monitoring of tinyML models deployed remotely without access to true labels. However, existing UQ methods impose significant memory and compute demands, making them impractical for ultra-low-power, KB-sized tinyML devices. Prior work has attempted to reduce overhead by using early-exit ensembles to quantify uncertainty in a single forward pass, but these approaches still carry prohibitive costs. To address this, we propose QUTE, a novel resource-efficient early-exit-assisted ensemble architecture optimized for tinyML models. QUTE introduces additional output blocks at the final exit of the base network, distilling early-exit knowledge into these blocks to form a diverse yet lightweight ensemble. We show that QUTE delivers superior uncertainty quality on tiny models, achieving comparable performance on larger models with 59% smaller model sizes than the closest prior work. When deployed on a microcontroller, QUTE demonstrates a 31% reduction in latency on average. In addition, we show that QUTE excels at detecting accuracy-drop events, outperforming all prior works.

Poster
Active Evaluation Acquisition for Efficient LLM Benchmarking

Yang Li, Jie Ma, Miguel Ballesteros, Yassine Benajiba, Graham Horwood

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As large language models (LLMs) become increasingly versatile, numerous large scale benchmarks have been developed to thoroughly assess their capabilities. These benchmarks typically consist of diverse datasets and prompts to evaluate different aspects of LLM performance. However, comprehensive evaluations on hundreds or thousands of prompts incur tremendous costs in terms of computation, money, and time. In this work, we investigate strategies to improve evaluation efficiency by selecting a subset of examples from each benchmark using a learned policy. Our approach models the dependencies across test examples, allowing accurate prediction of the evaluation outcomes for the remaining examples based on the outcomes of the selected ones. Consequently, we only need to acquire the actual evaluation outcomes for the selected subset. We rigorously explore various subset selection policies and introduce a novel RL-based policy that leverages the captured dependencies. Empirical results demonstrate that our approach significantly reduces the number of evaluation prompts required while maintaining accurate performance estimates compared to previous methods.

Poster
Local Manifold Approximation and Projection for Manifold-Aware Diffusion Planning

Kyowoon Lee, Jaesik Choi

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Recent advances in diffusion-based generative modeling have demonstrated significant promise in tackling long-horizon, sparse-reward tasks by leveraging offline datasets. While these approaches have achieved promising results, their reliability remains inconsistent due to the inherent stochastic risk of producing infeasible trajectories, limiting their applicability in safety-critical applications. We identify that the primary cause of these failures is inaccurate guidance during the sampling procedure, and demonstrate the existence of manifold deviation by deriving a lower bound on the guidance gap. To address this challenge, we propose *Local Manifold Approximation and Projection* (LoMAP), a *training-free* method that projects the guided sample onto a low-rank subspace approximated from offline datasets, preventing infeasible trajectory generation. We validate our approach on standard offline reinforcement learning benchmarks that involve challenging long-horizon planning. Furthermore, we show that, as a standalone module, LoMAP can be incorporated into the hierarchical diffusion planner, providing further performance enhancements.

Poster
An Architecture Search Framework for Inference-Time Techniques

Jon Saad-Falcon, Adrian Gamarra Lafuente, Shlok Natarajan, Nahum Maru, Hristo Todorov, Etash Kumar Guha, E. Kelly Buchanan, Mayee F Chen, Neel Guha, Christopher Re, Azalia Mirhoseini

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Inference-time techniques, such as repeated sampling or iterative revisions, are emerging as powerful ways to enhance large-language models (LLMs) at test time. However, best practices for developing systems that combine these techniques remain underdeveloped due to our limited understanding of the utility of each technique across models and tasks, the interactions between them, and the massive search space for combining them. To address these challenges, we introduce Archon, a modular and automated framework for optimizing the process of selecting and combining inference-time techniques and LLMs. Given a compute budget and a set of available LLMs, Archon explores a large design space to discover optimized configurations tailored to target benchmarks. It can design custom or general-purpose architectures that advance the Pareto frontier of accuracy vs. maximum token budget compared to top-performing baselines. Across instruction-following, reasoning, and coding tasks, we show that Archon can leverage additional inference compute budget to design systems that outperform frontier models such as OpenAI’s o1, GPT-4o, and Claude 3.5 Sonnet by an average of 15.1%.

Poster
Causality-Aware Contrastive Learning for Robust Multivariate Time-Series Anomaly Detection

HyunGi Kim, Jisoo Mok, Dongjun Lee, Jaihyun Lew, Sungjae Kim, Sungroh Yoon

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Utilizing the complex inter-variable causal relationships within multivariate time-series provides a promising avenue toward more robust and reliable multivariate time-series anomaly detection (MTSAD) but remains an underexplored area of research. This paper proposes Causality-Aware contrastive learning for RObust multivariate Time-Series (CAROTS), a novel MTSAD pipeline that incorporates the notion of causality into contrastive learning. CAROTS employs two data augmentors to obtain causality-preserving and -disturbing samples that serve as a wide range of normal variations and synthetic anomalies, respectively. With causality-preserving and -disturbing samples as positives and negatives, CAROTS performs contrastive learning to train an encoder whose latent space separates normal and abnormal samples based on causality. Moreover, CAROTS introduces a similarity-filtered one-class contrastive loss that encourages the contrastive learning process to gradually incorporate more semantically diverse samples with common causal relationships. Extensive experiments on five real-world and two synthetic datasets validate that the integration of causal relationships endows CAROTS with improved MTSAD capabilities. The code is available at https://github.com/kimanki/CAROTS.

Poster
Bifurcate then Alienate: Incomplete Multi-view Clustering via Coupled Distribution Learning with Linear Overhead

Shengju Yu, Yiu-ming Cheung, Siwei Wang, Xinwang Liu, En Zhu

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Despite remarkable advances, existing incomplete multi-view clustering (IMC) methods typically leverage either perspective-shared or perspective-specific determinants to encode cluster representations. To address this limitation, we introduce a BACDL algorithm designed to explicitly capture both concurrently, thereby exploiting heterogeneous data more effectively. It chooses to bifurcate feature clusters and further alienate them to enlarge the discrimination. With distribution learning, it successfully couples view guidance into feature clusters to alleviate dimension inconsistency. Then, building on the principle that samples in one common cluster own similar marginal distribution and conditional distribution, it unifies the association between feature clusters and sample clusters to bridge all views. Thereafter, all incomplete sample clusters are reordered and mapped to a common one to formulate clustering embedding. Last, the overall linear overhead endows it with a resource-efficient characteristic.

Poster
Differentially Private Federated $k$-Means Clustering with Server-Side Data

Jonathan Scott, Christoph H. Lampert, David Saulpic

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Clustering is a cornerstone of data analysis that is particularly suited to identifying coherent subgroups or substructures in unlabeled data, as are generated continuously in large amounts these days. However, in many cases traditional clustering methods are not applicable, because data are increasingly being produced and stored in a distributed way, e.g. on edge devices, and privacy concerns prevent it from being transferred to a central server. To address this challenge, we present FedDP-KMeans, a new algorithm for $k$-means clustering that is fully-federated as well as differentially private. Our approach leverages (potentially small and out-of-distribution) server-side data to overcome the primary challenge of differentially private clustering methods: the need for a good initialization. Combining our initialization with a simple federated DP-Lloyds algorithm we obtain an algorithm that achieves excellent results on synthetic and real-world benchmark tasks. We also provide a theoretical analysis of our method that provides bounds on the convergence speed and cluster identification success.

Poster
Sidechain conditioning and modeling for full-atom protein sequence design with FAMPNN

Talal Widatalla, Richard W. Shuai, Brian Hie, Possu Huang

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Leading deep learning-based methods for fixed-backbone protein sequence design do not model protein sidechain conformation during sequence generation despite the large role the three-dimensional arrangement of sidechain atoms play in protein conformation, stability, and overall protein function. Instead, these models implicitly reason about crucial sidechain interactions based solely on backbone geometry and amino-acid sequence. To address this, we present FAMPNN (Full-Atom MPNN), a sequence design method that explicitly models both sequence identity and sidechain conformation for each residue, where the per-token distribution of a residue’s discrete amino acid identity and its continuous sidechain conformation are learned with a combined categorical cross-entropy and diffusion loss objective. We demonstrate learning these distributions jointly is a highly synergistic task that both improves sequence recovery while achieving state-of-the-art sidechain packing. Furthermore, benefits from explicit full-atom modeling generalize from sequence recovery to practical protein design applications, such as zero-shot prediction of experimental binding and stability measurements.

Poster
Statistical Hypothesis Testing for Auditing Robustness in Language Models

Paulius Rauba, Qiyao Wei, Mihaela van der Schaar

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Consider the problem of testing whether the outputs of a large language model (LLM) system change under an arbitrary intervention, such as an input perturbation or changing the model variant. We cannot simply compare two LLM outputs since they might differ due to the stochastic nature of the system, nor can we compare the entire output distribution due to computational intractability. While existing methods for analyzing text-based outputs exist, they focus on fundamentally different problems, such as measuring bias or fairness. To this end, we introduce distribution-based perturbation analysis, a framework that reformulates LLM perturbation analysis as a frequentist hypothesis testing problem. We construct empirical null and alternative output distributions within a low-dimensional semantic similarity space via Monte Carlo sampling, enabling tractable inference without restrictive distributional assumptions. The framework is (i) model-agnostic, (ii) supports the evaluation of arbitrary input perturbations on any black-box LLM, (iii) yields interpretable p-values; (iv) supports multiple perturbations via controlled error rates; and (v) provides scalar effect sizes. We demonstrate the usefulness of the framework across multiple case studies, showing how we can quantify response changes, measure true/false positive rates, and evaluate alignment with reference models. Above all, we see this as a reliable frequentist hypothesis testing framework for LLM auditing.

Poster
Hierarchical Refinement: Optimal Transport to Infinity and Beyond

Peter Halmos, Julian Gold, XinHao Liu, Benjamin Raphael

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Optimal transport (OT) has enjoyed great success in machine learning as a principled way to align datasets via a least-cost correspondence, driven in large part by the runtime efficiency of the Sinkhorn algorithm (Cuturi, 2013). However, Sinkhorn has quadratic space complexity in the number of points, limiting scalability to larger datasets. Low-rank OT achieves linear-space complexity, but by definition, cannot compute a one-to-one correspondence between points. When the optimal transport problem is an assignment problem between datasets then an optimal mapping, known as the _Monge map_, is guaranteed to be a bijection. In this setting, we show that the factors of an optimal low-rank coupling co-cluster each point with its image under the Monge map. We leverage this invariant to derive an algorithm, _Hierarchical Refinement_ (`HiRef`), that dynamically constructs a multiscale partition of each dataset using low-rank OT subproblems, culminating in a bijective coupling. Hierarchical Refinement uses linear space and has log-linear runtime, retaining the space advantage of low-rank OT while overcoming its limited resolution. We demonstrate the advantages of Hierarchical Refinement on several datasets, including ones containing over a million points, scaling full-rank OT to problems previously beyond Sinkhorn's reach.

Oral
Algorithms and Hardness for Active Learning on Graphs

Vincent Cohen-Addad, Silvio Lattanzi, Simon Meierhans

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We study the offline active learning problem on graphs. In this problem, one seeks to select k vertices whose labels are best suited for predicting the labels of all the other vertices in the graph. Guillory and Bilmes (Guillory & Bilmes, 2009) introduced a natural theoretical model motivated by a label smoothness assumption. Prior to our work, algorithms with theoretical guarantees were only known for restricted graph types such as trees (Cesa-Bianchi et al., 2010) despite the models simplicity. We present the first O(log n)-resource augmented algorithm for general weighted graphs. To complement our algorithm, we show constant hardness of approximation.

Poster
GRU: Mitigating the Trade-off between Unlearning and Retention for LLMs

Yue Wang, Qizhou Wang, Feng Liu, Wei Huang, Yali Du, Xiaojiang Du, Bo Han

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Large language model (LLM) unlearning has demonstrated its essential role in removing privacy and copyright-related responses, crucial for their legal and safe applications. However, the pursuit of complete unlearning often comes with substantial costs due to its compromises in their general functionality, leading to a notorious trade-off between unlearning and retention. It motivates this paper to explore enhanced unlearning schemes that can mitigate this trade-off. Specifically, we propose Gradient Rectified Unlearning (GRU), an improved framework that regulates the directions of gradient updates during the unlearning procedure such that their side impacts on other, unrelated responses can be minimized. GRU is easy and general to implement, demonstrating practical effectiveness across a variety of well-established unlearning benchmarks.

Poster