ICML 2025 Papers

International Conference on Machine Learning

Decision breakdown

3,342papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    1213.6%
  • Spotlight
    2256.7%
  • Poster
    2,99689.6%

Browse all papers

Reconstructing Cell Lineage Trees from Phenotypic Features with Metric Learning

Da Kuang, GuanWen Qiu, Junhyong Kim

Expand abstract

How a single fertilized cell gives rise to a complex array of specialized cell types in development is a central question in biology. The cells replicate to generate cell lineages and acquire differentiated characteristics through poorly understood molecular processes. A key approach to studying developmental processes is to infer the tree graph of cell lineage histories, which provides an analytical framework for dissecting individual cells' molecular decisions during replication and differentiation (i.e., acquisition of specialized traits). Although genetically engineered lineage-tracing methods have advanced the field, they are either infeasible or ethically constrained in many organisms. By contrast, modern single-cell technologies can measure high-content molecular profiles (*e.g.*, transcriptomes) in a wide range of biological systems. Here, we introduce *CellTreeQM*, a novel deep learning method based on transformer architectures that learns an embedding space with geometric properties optimized for tree-graph inference. By formulating the lineage reconstruction problem as tree-metric learning, we systematically explore weakly supervised training settings at different levels of information and present the *Cell Lineage Reconstruction Benchmark* to facilitate comprehensive evaluation. This benchmark includes (1) synthetic data modeled via Brownian motion with independent noise and spurious signals; (2) lineage-resolved single-cell RNA sequencing datasets. Experimental results show that *CellTreeQM* recovers lineage structures with minimal supervision and limited data, offering a scalable framework for uncovering cell lineage relationships. To our knowledge, this is the first method to cast cell lineage inference explicitly as a metric learning task, paving the way for future computational models aimed at uncovering the molecular dynamics of cell lineage. Code and benchmarks are available at: https://kuang-da.github.io/CellTreeQM-page

Poster
MedRAX: Medical Reasoning Agent for Chest X-ray

Adibvafa Fallahpour, Jun Ma, Alif Munim, Hongwei Lyu, Bo Wang

Expand abstract

Chest X-rays (CXRs) play an integral role in driving critical decisions in disease management and patient care. While recent innovations have led to specialized models for various CXR interpretation tasks, these solutions often operate in isolation, limiting their practical utility in clinical practice. We present MedRAX, the first versatile AI agent that seamlessly integrates state-of-the-art CXR analysis tools and multimodal large language models into a unified framework. MedRAX dynamically leverages these models to address complex medical queries without requiring additional training. To rigorously evaluate its capabilities, we introduce ChestAgentBench, a comprehensive benchmark containing 2,500 complex medical queries across 7 diverse categories. Our experiments demonstrate that MedRAX achieves state-of-the-art performance compared to both open-source and proprietary models, representing a significant step toward the practical deployment of automated CXR interpretation systems. Data and code have been publicly available at https://github.com/bowang-lab/MedRAX

Poster
Continual Generalized Category Discovery: Learning and Forgetting from a Bayesian Perspective

Hao Dai, Jagmohan Chauhan

Expand abstract

Continual Generalized Category Discovery (C-GCD) faces a critical challenge: incrementally learning new classes from unlabeled data streams while preserving knowledge of old classes. Existing methods struggle with catastrophic forgetting, especially when unlabeled data mixes known and novel categories. We address this by analyzing C-GCD’s forgetting dynamics through a Bayesian lens, revealing that covariance misalignment between old and new classes drives performance degradation. Building on this insight, we propose Variational Bayes C-GCD (VB-CGCD), a novel framework that integrates variational inference with covariance-aware nearest-class-mean classification. VB-CGCD adaptively aligns class distributions while suppressing pseudo-label noise via stochastic variational updates. Experiments show VB-CGCD surpasses prior art by +15.21% with the overall accuracy in the final session on standard benchmarks. We also introduce a new challenging benchmark with only 10% labeled data and extended online phases—VB-CGCD achieves a 67.86% final accuracy, significantly higher than state-of-the-art (38.55%), demonstrating its robust applicability across diverse scenarios. Code is available at: https://github.com/daihao42/VB-CGCD

Poster
Adaptive Estimation and Learning under Temporal Distribution Shift

Dheeraj Baby, Yifei Tang, Hieu Duy Nguyen, Yu-Xiang Wang, Rohit Pyati

Expand abstract

In this paper, we study the problem of estimation and learning under temporal distribution shift. Consider an observation sequence of length $n$, which is a noisy realization of a time-varying ground-truth sequence. Our focus is to develop methods to estimate the groundtruth at the final time-step while providing sharp point-wise estimation error rates. We show that, *without prior knowledge* on the level of temporal shift, a wavelet soft-thresholding estimator provides an *optimal* estimation error bound for the groundtruth. Our proposed estimation method generalizes existing researches (Mazetto and Upfal, 2023) by establishing a connection between the sequence's non-stationarity level and the sparsity in the wavelet-transformed domain. Our theoretical findings are validated by numerical experiments. Additionally, we applied the estimator to derive sparsity-aware excess risk bounds for binary classification under distribution shift and to develop computationally efficient training objectives. As a final contribution, we draw parallels between our results and the classical signal processing problem of total-variation denoising (Mammen and van de Geer 1997; Tibshirani 2014 ), uncovering *novel optimal* algorithms for such task.

Poster
Accelerating Spectral Clustering under Fairness Constraints

Francesco Tonin, Alex Lambert, Johan Suykens, Volkan Cevher

Expand abstract

Fairness of decision-making algorithms is an increasingly important issue. In this paper, we focus on spectral clustering with group fairness constraints, where every demographic group is represented in each cluster proportionally as in the general population. We present a new efficient method for fair spectral clustering (Fair SC) by casting the Fair SC problem within the difference of convex functions (DC) framework. To this end, we introduce a novel variable augmentation strategy and employ an alternating direction method of multipliers type of algorithm adapted to DC problems. We show that each associated subproblem can be solved efficiently, resulting in higher computational efficiency compared to prior work, which required a computationally expensive eigendecomposition. Numerical experiments demonstrate the effectiveness of our approach on both synthetic and real-world benchmarks, showing significant speedups in computation time over prior art, especially as the problem size grows. This work thus represents a considerable step forward towards the adoption of fair clustering in real-world applications.

Poster
FlowAR: Scale-wise Autoregressive Image Generation Meets Flow Matching

Sucheng Ren, Qihang Yu, Ju He, Xiaohui Shen, Alan Yuille, Liang-Chieh Chen

Expand abstract

Autoregressive (AR) modeling has achieved remarkable success in natural language processing by enabling models to generate text with coherence and contextual understanding through next token prediction. Recently, in image generation, VAR proposes scale-wise autoregressive modeling, which extends the next token prediction to the next scale prediction, preserving the 2D structure of images. However, VAR encounters two primary challenges: (1) its complex and rigid scale design limits generalization in next scale prediction, and (2) the generator’s dependence on a discrete tokenizer with the same complex scale structure restricts modularity and flexibility in updating the tokenizer. To address these limitations, we introduce FlowAR, a general next scale prediction method featuring a streamlined scale design, where each subsequent scale is simply double the previous one. This eliminates the need for VAR’s intricate multi-scale residual tokenizer and enables the use of any off-the-shelf Variational AutoEncoder (VAE). Our simplified design enhances generalization in next scale prediction and facilitates the integration of Flow Matching for high-quality image synthesis. We validate the effectiveness of FlowAR on the challenging ImageNet-256 benchmark, demonstrating superior generation performance compared to previous methods. Codes is available at \href{https://github.com/OliverRensu/FlowAR}{https://github.com/OliverRensu/FlowAR}.

Poster
Disparate Conditional Prediction in Multiclass Classifiers

Sivan Sabato, Eran Treister, Elad Yom-Tov

Expand abstract

We propose methods for auditing multiclass classifiers for fairness under multiclass equalized odds, by estimating the deviation from equalized odds when the classifier is not completely fair. We generalize to multiclass classifiers the measure of Disparate Conditional Prediction (DCP), originally suggested by Sabato & Yom-Tov (2020) for binary classifiers. DCP is defined as the fraction of the population for which the classifier predicts with conditional prediction probabilities that differ from the closest common baseline. We provide new local-optimization methods for estimating the multiclass DCP under two different regimes, one in which the conditional confusion matrices for each protected sub-population are known, and one in which these cannot be estimated, for instance, because the classifier is inaccessible or because good-quality individual-level data is not available. These methods can be used to detect classifiers that likely treat a significant fraction of the population unfairly. Experiments demonstrate the accuracy of the methods. The code for the experiments is provided as supplementary material.

Poster
Efficient Graph Continual Learning via Lightweight Graph Neural Tangent Kernels-based Dataset Distillation

Rihong Qiu, Xinke Jiang, Yuchen Fang, Hongbin Lai, Hao Miao, Xu Chu, Junfeng Zhao, Yasha Wang

Expand abstract

Graph Neural Networks (GNNs) have emerged as a fundamental tool for modeling complex graph structures across diverse applications. However, directly applying pretrained GNNs to varied downstream tasks without fine-tuning-based continual learning remains challenging, as this approach incurs high computational costs and hinders the development of Large Graph Models (LGMs). In this paper, we investigate an efficient and generalizable dataset distillation framework for Graph Continual Learning (GCL) across multiple downstream tasks, implemented through a novel Lightweight Graph Neural Tangent Kernel (LIGHTGNTK). Specifically, LIGHTGNTK employs a low-rank approximation of the Laplacian matrix via Bernoulli sampling and linear association within the GNTK. This design enables efficient capture of both structural and feature relationships while supporting gradient-based dataset distillation. Additionally, LIGHTGNTK incorporates a unified subgraph anchoring strategy, allowing it to handle graph-level, node-level, and edge-level tasks under diverse input structures. Comprehensive experiments on several datasets show that LIGHTGNTK achieves state-of-the-art performance in GCL scenarios, promoting the development of adaptive and scalable LGMs.

Poster
Learning Event Completeness for Weakly Supervised Video Anomaly Detection

Yu Wang, Shiwei Chen

Expand abstract

Weakly supervised video anomaly detection (WS-VAD) is tasked with pinpointing temporal intervals containing anomalous events within untrimmed videos, utilizing only video-level annotations. However, a significant challenge arises due to the absence of dense frame-level annotations, often leading to incomplete localization in existing WS-VAD methods. To address this issue, we present a novel LEC-VAD, Learning Event Completeness for Weakly Supervised Video Anomaly Detection, which features a dual structure designed to encode both category-aware and category-agnostic semantics between vision and language. Within LEC-VAD, we devise semantic regularities that leverage an anomaly-aware Gaussian mixture to learn precise event boundaries, thereby yielding more complete event instances. Besides, we develop a novel memory bank-based prototype learning mechanism to enrich concise text descriptions associated with anomaly-event categories. This innovation bolsters the text's expressiveness, which is crucial for advancing WS-VAD. Our LEC-VAD demonstrates remarkable advancements over the current state-of-the-art methods on two benchmark datasets XD-Violence and UCF-Crime.

Poster
Tackling Dimensional Collapse toward Comprehensive Universal Domain Adaptation

Hung-Chieh Fang, Po-Yi Lu, Hsuan-Tien Lin

Expand abstract

Universal Domain Adaptation (UniDA) addresses unsupervised domain adaptation where target classes may differ arbitrarily from source ones, except for a shared subset. A widely used approach, partial domain matching (PDM), aligns only shared classes but struggles in extreme cases where many source classes are absent in the target domain, underperforming the most naive baseline that trains on only source data. In this work, we identify that the failure of PDM for extreme UniDA stems from dimensional collapse (DC) in target representations. To address target DC, we propose to jointly leverage the alignment and uniformity techniques in self-supervised learning on the unlabeled target data to preserve the intrinsic structure of the learned representations. Our experimental results confirm that SSL consistently advances PDM and delivers new state-of-the-art results across a broader benchmark of UniDA scenarios with different portions of shared classes, representing a crucial step toward truly comprehensive UniDA. Project page: https://dc-unida.github.io/

Poster
CSTrack: Enhancing RGB-X Tracking via Compact Spatiotemporal Features

Xiaokun Feng, Dailing Zhang, Shiyu Hu, Xuchen Li, Meiqi Wu, Jing Zhang, Xiaotang Chen, Kaiqi Huang

Expand abstract

Effectively modeling and utilizing spatiotemporal features from RGB and other modalities (e.g., depth, thermal, and event data, denoted as X) is the core of RGB-X tracker design. Existing methods often employ two parallel branches to separately process the RGB and X input streams, requiring the model to simultaneously handle two dispersed feature spaces, which complicates both the model structure and computation process. More critically, intra-modality spatial modeling within each dispersed space incurs substantial computational overhead, limiting resources for inter-modality spatial modeling and temporal modeling. To address this, we propose a novel tracker, CSTrack, which focuses on modeling Compact Spatiotemporal features to achieve simple yet effective tracking. Specifically, we first introduce an innovative Spatial Compact Module that integrates the RGB-X dual input streams into a compact spatial feature, enabling thorough intra- and inter-modality spatial modeling. Additionally, we design an efficient Temporal Compact Module that compactly represents temporal features by constructing the refined target distribution heatmap. Extensive experiments validate the effectiveness of our compact spatiotemporal modeling method, with CSTrack achieving new SOTA results on mainstream RGB-X benchmarks. The code and models will be released at: https://github.com/XiaokunFeng/CSTrack.

Poster
DUNIA: Pixel-Sized Embeddings via Cross-Modal Alignment for Earth Observation Applications

Ibrahim Fayad, Max Zimmer, Martin Schwartz, Fabian Gieseke, Philippe CIAIS, Gabriel Belouze, Sarah Brood, Aurélien de Truchis, Alexandre d'Aspremont

Expand abstract

Significant efforts have been directed towards adapting self-supervised multimodal learning for Earth observation applications. However, most current methods produce coarse patch-sized embeddings, limiting their effectiveness and integration with other modalities like LiDAR. To close this gap, we present DUNIA, an approach to learn pixel-sized embeddings through cross-modal alignment between images and full-waveform LiDAR data. As the model is trained in a contrastive manner, the embeddings can be directly leveraged in the context of a variety of environmental monitoring tasks in a zero-shot setting. In our experiments, we demonstrate the effectiveness of the embeddings for seven such tasks: canopy height mapping, fractional canopy cover, land cover mapping, tree species identification, plant area index, crop type classification, and per-pixel waveform-based vertical structure mapping. The results show that the embeddings, along with zero-shot classifiers, often outperform specialized supervised models, even in low-data regimes. In the fine-tuning setting, we show strong performances near or better than the state-of-the-art on five out of six tasks.

Poster
BalancEdit: Dynamically Balancing the Generality-Locality Trade-off in Multi-modal Model Editing

Dongliang Guo, Mengxuan Hu, Zihan Guan, Thomas Hartvigsen, Sheng Li

Expand abstract

Large multi-modal models inevitably decay over time as facts update and previously learned information becomes outdated. Traditional approaches such as fine-tuning are often impractical for updating these models due to their size and complexity. Instead, direct knowledge editing within the models presents a more viable solution. Current model editing techniques, however, typically overlook the unique influence ranges of different facts, leading to compromised model performance in terms of both generality and locality. To address this issue, we introduce the concept of the generality-locality trade-off in multi-modal model editing. We develop a new model editing dataset named OKEDIT, specifically designed to effectively evaluate this trade-off. Building on this foundation, we propose \textbf{BalancEdit}, a novel method for balanced model editing that dynamically achieves an optimal balance between generality and locality. BalancEdit utilizes a unique mechanism that generates both positive and negative samples for each fact to accurately determine its influence scope and incorporates these insights into the model's latent space using a discrete, localized codebook of edits, without modifying the underlying model weights. To our knowledge, this is the first approach explicitly addressing the generality-locality trade-off in multi-modal model editing. Our comprehensive results confirm the effectiveness of BalancEdit, demonstrating minimal trade-offs while maintaining robust editing capabilities. Our code and dataset are available at https://github.com/donglgcn/BalancEdit/tree/MMOKVQA.

Poster
A Parameter-Free and Near-Optimal Zeroth-Order Algorithm for Stochastic Convex Optimization

Kunjie Ren, Luo Luo

Expand abstract

This paper studies zeroth-order optimization for stochastic convex minimization problems. We propose a parameter-free stochastic zeroth-order method (POEM), which introduces a step-size scheme based on the distance over finite difference and an adaptive smoothing parameter. Our theoretical analysis shows that POEM achieves near-optimal stochastic zeroth-order oracle complexity. Furthermore, numerical experiments demonstrate that POEM outperforms existing zeroth-order methods in practice.

Poster
Spherical-Nested Diffusion Model for Panoramic Image Outpainting

Xiancheng Sun, Senmao Ma, Shengxi Li, Mai Xu, Jingyuan Xia, Lai Jiang, Xin Deng, Jiali Wang

Expand abstract

Panoramic image outpainting acts as a pivotal role in immersive content generation, allowing for seamless restoration and completion of panoramic content. Given the fact that the majority of generative outpainting solutions operates on planar images, existing methods for panoramic images address the sphere nature by soft regularisation during the end-to-end learning, which still fails to fully exploit the spherical content. In this paper, we set out the first attempt to impose the sphere nature in the design of diffusion model, such that the panoramic format is intrinsically ensured during the learning procedure, named as spherical-nested diffusion (SpND) model. This is achieved by employing spherical noise in the diffusion process to address the structural prior, together with a newly proposed spherical deformable convolution (SDC) module to intrinsically learn the panoramic knowledge. Upon this, the proposed method is effectively integrated into a pre-trained diffusion model, outperforming existing state-of-the-art methods for panoramic image outpainting. In particular, our SpND method reduces the FID values by more than 50\% against the state-of-the-art PanoDiffusion method. Codes are publicly available at \url{https://github.com/chronos123/SpND}.

Poster
Fast Estimation of Partial Dependence Functions using Trees

Jinyang Liu, Tessa Steensgaard, Marvin N. Wright, Niklas Pfister, Munir Hiabu

Expand abstract

Many existing interpretation methods are based on Partial Dependence (PD) functions that, for a pre-trained machine learning model, capture how a subset of the features affects the predictions by averaging over the remaining features. Notable methods include Shapley additive explanations (SHAP) which computes feature contributions based on a game theoretical interpretation and PD plots (i.e., 1-dim PD functions) that capture average marginal main effects. Recent work has connected these approaches using a functional decomposition and argues that SHAP values can be misleading since they merge main and interaction effects into a single local effect. However, a major advantage of SHAP compared to other PD-based interpretations has been the availability of fast estimation techniques, such as `TreeSHAP`. In this paper, we propose a new tree-based estimator, `FastPD`, which efficiently estimates arbitrary PD functions. We show that `FastPD` consistently estimates the desired population quantity -- in contrast to path-dependent `TreeSHAP` which is inconsistent when features are correlated. For moderately deep trees, `FastPD` improves the complexity of existing methods from quadratic to linear in the number of observations. By estimating PD functions for arbitrary feature subsets, `FastPD` can be used to extract PD-based interpretations such as SHAP, PD plots and higher-order interaction effects.

Poster
Step-DAD: Semi-Amortized Policy-Based Bayesian Experimental Design

Marcel Hedman, Desi R. Ivanova, Cong Guan, Tom Rainforth

Expand abstract

We develop a semi-amortized, policy-based, approach to Bayesian experimental design (BED) called Stepwise Deep Adaptive Design (Step-DAD). Like existing, fully amortized, policy-based BED approaches, Step-DAD trains a design policy upfront before the experiment. However, rather than keeping this policy fixed, Step-DAD periodically updates it as data is gathered, refining it to the particular experimental instance. This test-time adaptation improves both the flexibility and the robustness of the design strategy compared with existing approaches. Empirically, Step-DAD consistently demonstrates superior decision-making and robustness compared with current state-of-the-art BED methods.

Poster
Trustworthy Machine Learning through Data-Specific Indistinguishability

Hanshen Xiao, Zhen Yang, G. Edward Suh

Expand abstract

This paper studies a range of AI/ML trust concepts, including memorization, data poisoning, and copyright, which can be modeled as constraints on the influence of data on a (trained) model, characterized by the outcome difference from a processing function (training algorithm). In this realm, we show that provable trust guarantees can be efficiently provided through a new framework termed Data-Specific Indistinguishability (DSI) to select trust-preserving randomization tightly aligning with targeted outcome differences, as a relaxation of the classic Input-Independent Indistinguishability (III). We establish both the theoretical and algorithmic foundations of DSI with the optimal multivariate Gaussian mechanism. We further show its applications to develop trustworthy deep learning with black-box optimizers. The experimental results on memorization mitigation, backdoor defense, and copyright protection show both the efficiency and effectiveness of the DSI noise mechanism.

Poster
Variational Learning of Fractional Posteriors

Kian Ming A. Chai, Edwin V. Bonilla

Expand abstract

We introduce a novel one-parameter variational objective that lower bounds the data evidence and enables the estimation of approximate fractional posteriors. We extend this framework to hierarchical construction and Bayes posteriors, offering a versatile tool for probabilistic modelling. We demonstrate two cases where gradients can be obtained analytically and a simulation study on mixture models showing that our fractional posteriors can be used to achieve better calibration compared to posteriors from the conventional variational bound. When applied to variational autoencoders (VAEs), our approach attains higher evidence bounds and enables learning of high-performing approximate Bayes posteriors jointly with fractional posteriors. We show that VAEs trained with fractional posteriors produce decoders that are better aligned for generation from the prior.

Poster
Revisiting Cooperative Off-Policy Multi-Agent Reinforcement Learning

Yueheng Li, Guangming Xie, Zongqing Lu

Expand abstract

Cooperative Multi-Agent Reinforcement Learning (MARL) has become a critical tool for addressing complex real-world problems. However, off-policy MARL methods, which rely on joint Q-functions, face significant scalability challenges due to the exponentially growing joint action space. In this work, we highlight a critical yet often overlooked issue: erroneous Q-target estimation, primarily caused by extrapolation error. Our analysis reveals that this error becomes increasingly severe as the number of agents grows, leading to unique challenges in MARL due to its expansive joint action space and the decentralized execution paradigm. To address these challenges, we propose a suite of techniques tailored for off-policy MARL, including annealed multi-step bootstrapping, averaged Q-targets, and restricted action representation. Experimental results demonstrate that these methods effectively mitigate erroneous estimations, yielding substantial performance improvements in challenging benchmarks such as SMAC, SMACv2, and Google Research Football.

Poster