ICLR 2025 Papers

We present a new family of mobile hybrid vision networks, called iFormer, with a focus on optimizing latency and accuracy on mobile applications. iFormer effectively integrates the fast local representation capacity of convolution with the efficient global modeling ability of self-attention. The local interactions are derived from transforming a standard convolutional network, \textit{i.e.}, ConvNeXt, to design a more lightweight mobile network. Our newly introduced mobile modulation attention removes memory-intensive operations in MHA and employs an efficient modulation mechanism to boost dynamic global representational capacity. We conduct comprehensive experiments demonstrating that iFormer outperforms existing lightweight networks across various tasks. Notably, iFormer achieves an impressive Top-1 accuracy of 80.4% on ImageNet-1k with a latency of only 1.10 ms on an iPhone 13, surpassing the recently proposed MobileNetV4 under similar latency constraints. Additionally, our method shows significant improvements in downstream tasks, including COCO object detection, instance segmentation, and ADE20k semantic segmentation, while still maintaining low latency on mobile devices for high-resolution inputs in these scenarios. Code and models are available at: https://github.com/ChuanyangZheng/iFormer.

The ability to construct transferable descriptors for molecular and biological systems has broad applications in drug discovery, molecular dynamics, and protein analysis. Geometric graph neural networks (Geom-GNNs) utilizing all-atom information have revolutionized atomistic simulations by enabling the prediction of interatomic potentials and molecular properties. Despite these advances, the application of all-atom Geom-GNNs in protein modeling remains limited due to computational constraints. In this work, we first demonstrate the potential of pre-trained Geom-GNNs as zero-shot transfer learners, effectively modeling protein systems with all-atom granularity. Through extensive experimentation to evaluate their expressive power, we characterize the scaling behaviors of Geom-GNNs across self-supervised, supervised, and unsupervised setups. Interestingly, we find that Geom-GNNs deviate from conventional power-law scaling observed in other domains, with no predictable scaling principles for molecular representation learning. Furthermore, we show how pre-trained graph embeddings can be directly used for analysis and synergize with other architectures to enhance expressive power for protein modeling.

Neural populations exhibit complex recurrent structures that drive behavior, while continuously receiving and integrating external inputs from sensory stimuli, upstream regions, and neurostimulation. However, neural populations are often modeled as autonomous dynamical systems, with little consideration given to the influence of external inputs that shape the population activity and behavioral outcomes. Here, we introduce BRAID, a deep learning framework that models nonlinear neural dynamics underlying behavior while explicitly incorporating any measured external inputs. Our method disentangles intrinsic recurrent neural population dynamics from the effects of inputs by including a forecasting objective within input-driven recurrent neural networks. BRAID further prioritizes the learning of intrinsic dynamics that are related to a behavior of interest by using a multi-stage optimization scheme. We validate BRAID with nonlinear simulations, showing that it can accurately learn the intrinsic dynamics shared between neural and behavioral modalities. We then apply BRAID to motor cortical activity recorded during a motor task and demonstrate that our method more accurately fits the neural-behavioral data by incorporating measured sensory stimuli into the model and improves the forecasting of neural-behavioral data compared with various baseline methods, whether input-driven or not.

Learning the structure of Bayesian networks is a fundamental yet computationally intensive task, especially as the number of variables grows. Traditional algorithms require retraining from scratch when new variables are introduced, making them impractical for dynamic or large-scale applications. In this paper, we propose an extendable structure learning strategy that efficiently incorporates a new variable $Y$ into an existing Bayesian network graph $\mathcal{G}$ over variables $\mathcal{X}$, resulting in an updated P-map graph $\bar{\mathcal{G}}$ on $\bar{\mathcal{X}} = \mathcal{X} \cup \{Y\}$. By leveraging the information encoded in $\mathcal{G}$, our method significantly reduces computational overhead compared to learning $\bar{\mathcal{G}}$ from scratch. Empirical evaluations demonstrate runtime reductions of up to 1300x without compromising accuracy. Building on this approach, we introduce a novel iterative paradigm for structure learning over $\mathcal{X}$. Starting with a small subset $\mathcal{U} \subset \mathcal{X}$, we iteratively add the remaining variables using our extendable algorithms to construct a P-map graph over the full set. This method offers runtime advantages comparable to common algorithms while maintaining similar accuracy. Our contributions provide a scalable solution for Bayesian network structure learning, enabling efficient model updates in real-time and high-dimensional settings.

Gaussian Process Factor Analysis (GPFA) is a powerful latent variable model for extracting low-dimensional manifolds underlying population neural activities. However, one limitation of standard GPFA models is that the number of latent factors needs to be pre-specified or selected through heuristic-based processes, and that all factors contribute at all times. We propose the infinite GPFA model, a fully Bayesian non-parametric extension of the classical GPFA by incorporating an Indian Buffet Process (IBP) prior over the factor loading process, such that it is possible to infer a potentially infinite set of latent factors, and the identity of those factors that contribute to neural firings in a compositional manner at \textit{each} time point. Learning and inference in the infinite GPFA model is performed through variational expectation-maximisation, and we additionally propose scalable extensions based on sparse variational Gaussian Process methods. We empirically demonstrate that the infinite GPFA model correctly infers dynamically changing activations of latent factors on a synthetic dataset. By fitting the infinite GPFA model to population activities of hippocampal place cells during spatial tasks with alternating random foraging and spatial memory phases, we identify novel non-trivial and behaviourally meaningful dynamics in the neural encoding process.

We consider the problem of minimizing a convex objective given access to an oracle that outputs "misaligned" stochastic gradients, where the expected value of the output is guaranteed to be correlated with, but not necessarily equal to the true gradient of the objective. In the case where the misalignment (or bias) of the oracle changes slowly, we obtain an optimization algorithm that achieves the optimum iteration complexity of $\tilde O(\epsilon^{-2})$; for the more general case where the changes need not be slow, we obtain an algorithm with $\tilde O(\epsilon^{-3})$ iteration complexity. As an application of our framework, we consider optimization problems with a "hidden convexity" property, and obtain an algorithm with $O(\epsilon^{-3})$ iteration complexity.

Modern recordings of neural activity provide diverse observations of neurons across brain areas, behavioral conditions, and subjects; presenting an exciting opportunity to reveal the fundamentals of brain-wide dynamics. Current analysis methods, however, often fail to fully harness the richness of such data, as they provide either uninterpretable representations (e.g., via deep networks) or oversimplify models (e.g., by assuming stationary dynamics or analyzing each session independently). Here, instead of regarding asynchronous neural recordings that lack alignment in neural identity or brain areas as a limitation, we leverage these diverse views into the brain to learn a unified model of neural dynamics. Specifically, we assume that brain activity is driven by multiple hidden global sub-circuits. These sub-circuits represent global basis interactions between neural ensembles—functional groups of neurons—such that the time-varying decomposition of these sub-circuits defines how the ensembles' interactions evolve over time non-stationarily and non-linearly. We discover the neural ensembles underlying non-simultaneous observations, along with their non-stationary evolving interactions, with our new model, **CREIMBO** (**C**ross-**R**egional **E**nsemble **I**nteractions in **M**ulti-view **B**rain **O**bservations). CREIMBO identifies the hidden composition of per-session neural ensembles through novel graph-driven dictionary learning and models the ensemble dynamics on a low-dimensional manifold spanned by a sparse time-varying composition of the global sub-circuits. Thus, CREIMBO disentangles overlapping temporal neural processes while preserving interpretability due to the use of a shared underlying sub-circuit basis. Moreover, CREIMBO distinguishes session-specific computations from global (session-invariant) ones by identifying session covariates and variations in sub-circuit activations. We demonstrate CREIMBO's ability to recover true components in synthetic data, and uncover meaningful brain dynamics in human high-density electrode recordings, including cross-subject neural mechanisms as well as inter- vs. intra-region dynamical motifs. Furthermore, using mouse whole-brain recordings, we show CREIMBO's ability to discover dynamical interactions that capture task and behavioral variables and meaningfully align with the biological importance of the brain areas they represent.

The loss of plasticity in learning agents, analogous to the solidification of neural pathways in biological brains, significantly impedes learning and adaptation in reinforcement learning due to its non-stationary nature. To address this fundamental challenge, we propose a novel approach, *Neuroplastic Expansion* (NE), inspired by cortical expansion in cognitive science. NE maintains learnability and adaptability throughout the entire training process by dynamically growing the network from a smaller initial size to its full dimension. Our method is designed with three key components: (1) elastic neuron generation based on potential gradients, (2) dormant neuron pruning to optimize network expressivity, and (3) neuron consolidation via experience review to strike a balance in the plasticity-stability dilemma. Extensive experiments demonstrate that NE effectively mitigates plasticity loss and outperforms state-of-the-art methods across various tasks in MuJoCo and DeepMind Control Suite environments. NE enables more adaptive learning in complex, dynamic environments, which represents a crucial step towards transitioning deep reinforcement learning from static, one-time training paradigms to more flexible, continually adapting models.

Current electrophysiological approaches can track the activity of many neurons, yet it is usually unknown which cell-types or brain areas are being recorded without further molecular or histological analysis. Developing accurate and scalable algorithms for identifying the cell-type and brain region of recorded neurons is thus crucial for improving our understanding of neural computation. In this work, we develop a multimodal contrastive learning approach for neural data that can be fine-tuned for different downstream tasks, including inference of cell-type and brain location. We utilize multimodal contrastive learning to jointly embed the activity autocorrelations and extracellular waveforms of individual neurons. We demonstrate that our embedding approach, Neuronal Embeddings via MultimOdal Contrastive Learning (NEMO), paired with supervised fine-tuning, achieves state-of-the-art cell-type classification for two opto-tagged datasets and brain region classification for the public International Brain Laboratory Brain-wide Map dataset. Our method represents a promising step towards accurate cell-type and brain region classification from electrophysiological recordings.

Despite participants engaging in unimodal stimuli, such as watching images or silent videos, recent work has demonstrated that multi-modal Transformer models can predict visual brain activity impressively well, even with incongruent modality representations. This raises the question of how accurately these multi-modal models can predict brain activity when participants are engaged in multi-modal stimuli. As these models grow increasingly popular, their use in studying neural activity provides insights into how our brains respond to such multi-modal naturalistic stimuli, i.e., where it separates and integrates information across modalities through a hierarchy of early sensory regions to higher cognition (language regions). We investigate this question by using multiple unimodal and two types of multi-modal models—cross-modal and jointly pretrained—to determine which type of models is more relevant to fMRI brain activity when participants are engaged in watching movies (videos with audio). We observe that both types of multi-modal models show improved alignment in several language and visual regions. This study also helps in identifying which brain regions process unimodal versus multi-modal information. We further investigate the contribution of each modality to multi-modal alignment by carefully removing unimodal features one by one from multi-modal representations, and find that there is additional information beyond the unimodal embeddings that is processed in the visual and language regions. Based on this investigation, we find that while for cross-modal models, their brain alignment is partially attributed to the video modality; for jointly pretrained models, it is partially attributed to both the video and audio modalities. These findings serve as strong motivation for the neuro-science community to investigate the interpretability of these models for deepening our understanding of multi-modal information processing in brain.