ICLR 2025 Papers

Messenger RNA (mRNA) plays a crucial role in protein synthesis, with its codon structure directly impacting biological properties. While Language Models (LMs) have shown promise in analyzing biological sequences, existing approaches fail to account for the hierarchical nature of mRNA's codon structure. We introduce Hierarchical Encoding for mRNA Language Modeling (HELM), a novel pre-training strategy that incorporates codon-level hierarchical structure into language model training. HELM modulates the loss function based on codon synonymity, aligning the model's learning process with the biological reality of mRNA sequences. We evaluate HELM on diverse mRNA datasets and tasks, demonstrating that HELM outperforms standard language model pre-training as well as existing foundation model baselines on six diverse downstream property prediction tasks and an antibody region annotation tasks on average by around 8%. Additionally, HELM enhances the generative capabilities of language model, producing diverse mRNA sequences that better align with the underlying true data distribution compared to non-hierarchical baselines.

We propose X-NeMo, a novel zero-shot diffusion-based portrait animation pipeline that animates a static portrait using facial movements from a driving video of a different individual. Our work first identifies the root causes of the limitations in prior approaches, such as identity leakage and difficulty in capturing subtle and extreme expressions. To address these challenges, we introduce a fully end-to-end training framework that distills a 1D identity-agnostic latent motion descriptor from driving image, effectively controlling motion through cross-attention during image generation. Our implicit motion descriptor captures expressive facial motion in fine detail, learned end-to-end from a diverse video dataset without reliance on any pre-trained motion detectors. We further disentangle motion latents from identity cues with enhanced expressiveness by supervising their learning with a dual GAN decoder, alongside spatial and color augmentations. By embedding the driving motion into a 1D latent vector and controlling motion via cross-attention instead of additive spatial guidance, our design effectively eliminates the transmission of spatial-aligned structural clues from the driving condition to the diffusion backbone, substantially mitigating identity leakage. Extensive experiments demonstrate that X-NeMo surpasses state-of-the-art baselines, producing highly expressive animations with superior identity resemblance. Our code and models will be available for research.

Diffusion models, the most popular generative paradigm so far, can inject conditional information into the generation path to guide the latent towards desired directions. However, existing text-to-image diffusion models often fail to maintain high image quality and high prompt-image alignment for those challenging prompts. To mitigate this issue and enhance existing pretrained diffusion models, we mainly made three contributions in this paper. First, we propose **diffusion self-reflection** that alternately performs denoising and inversion and demonstrate that such diffusion self-reflection can leverage the guidance gap between denoising and inversion to capture prompt-related semantic information with theoretical and empirical evidence. Second, motivated by theoretical analysis, we derive Zigzag Diffusion Sampling (Z-Sampling), a novel self-reflection-based diffusion sampling method that leverages the guidance gap between denosing and inversion to accumulate semantic information step by step along the sampling path, leading to improved sampling results. Moreover, as a plug-and-play method, Z-Sampling can be generally applied to various diffusion models (e.g., accelerated ones and Transformer-based ones) with very limited coding and computational costs. Third, our extensive experiments demonstrate that Z-Sampling can generally and significantly enhance generation quality across various benchmark datasets, diffusion models, and performance evaluation metrics. For example, DreamShaper with Z-Sampling can self-improve with the HPSv2 winning rate up to **94%** over the original results. Moreover, Z-Sampling can further enhance existing diffusion models combined with other orthogonal methods, including Diffusion-DPO. The code is publicly available at [github.com/xie-lab-ml/Zigzag-Diffusion-Sampling](https://github.com/xie-lab-ml/Zigzag-Diffusion-Sampling).

Recent advancements in operator-type neural networks have shown promising results in approximating the solutions of spatiotemporal Partial Differential Equations (PDEs). However, these neural networks often entail considerable training expenses, and may not always achieve the desired accuracy required in many scientific and engineering disciplines. In this paper, we propose a new learning framework to address these issues. A new spatiotemporal adaptation is proposed to generalize any Fourier Neural Operator (FNO) variant to learn maps between Bochner spaces, which can perform an arbitrary-length temporal super-resolution for the first time. To better exploit this capacity, a new paradigm is proposed to refine the commonly adopted end-to-end neural operator training and evaluations with the help from the wisdom from traditional numerical PDE theory and techniques. Specifically, in the learning problems for the turbulent flow modeled by the Navier-Stokes Equations (NSE), the proposed paradigm trains an FNO only for a few epochs. Then, only the newly proposed spatiotemporal spectral convolution layer is fine-tuned without the frequency truncation. The spectral fine-tuning loss function uses a negative Sobolev norm for the first time in operator learning, defined through a reliable functional-type a posteriori error estimator whose evaluation is exact thanks to the Parseval identity. Moreover, unlike the difficult nonconvex optimization problems in the end-to-end training, this fine-tuning loss is convex. Numerical experiments on commonly used NSE benchmarks demonstrate significant improvements in both computational efficiency and accuracy, compared to end-to-end evaluation and traditional numerical PDE solvers under certain conditions. The source code is publicly available at https://github.com/scaomath/torch-cfd.

We introduce WildBench, an automated evaluation framework designed to benchmark large language models (LLMs) using challenging, real-world user queries. WildBench consists of 1,024 tasks carefully selected from over one million human-chatbot conversation logs. For automated evaluation with WildBench, we have developed two metrics, WB-Reward and WB-Score, which are computable using advanced LLMs such as GPT-4-turbo. WildBench evaluation uses task-specific checklists to evaluate model outputs systematically and provides structured explanations that justify the scores and comparisons, resulting in more reliable and interpretable automatic judgments. WB-Reward employs fine-grained pairwise comparisons between model responses, generating five potential outcomes: much better, slightly better, slightly worse, much worse, or a tie. Unlike previous evaluations that employed a single baseline model, we selected three baseline models at varying performance levels to ensure a comprehensive pairwise evaluation. Additionally, we propose a simple method to mitigate length bias, by converting outcomes of “slightly better/worse” to “tie” if the winner response exceeds the loser one by more than K characters. WB-Score evaluates the quality of model outputs individually, making it a fast and cost-efficient evaluation metric. WildBench results demonstrate a strong correlation with the human-voted Elo ratings from Chatbot Arena on hard tasks. Specifically, WB-Reward achieves a Pearson correlation of 0.98 with top-ranking models. Additionally, WB-Score reaches 0.95, surpassing both ArenaHard’s 0.91 and AlpacaEval2.0’s 0.89 for length-controlled win rates, as well as the 0.87 for regular win rates.

As a core component of Transformer-like deep architectures, a feed-forward network (FFN) for channel mixing is responsible for learning features of each token. Recent works show channel mixing can be enhanced by increasing computational burden or can be slimmed at the sacrifice of performance. Although some efforts have been made, existing works are still struggling to solve the paradox of performance and complexity trade-offs. In this paper, we propose an Asymmetric Factorized Bilinear Operation (AFBO) to replace FFN of vision transformer (ViT), which attempts to efficiently explore rich statistics of token features for achieving better performance and complexity trade-off. Specifically, our AFBO computes second-order statistics via a spatial-channel factorized bilinear operation for feature learning, which replaces a simple linear projection in FFN and enhances the feature learning ability of ViT by modeling second-order correlation among token features. Furthermore, our AFBO presents two structured-sparsity channel mapping strategies, namely Grouped Cross Channel Mapping (GCCM) and Overlapped Cycle Channel Mapping (OCCM). They decompose bilinear operation into grouped channel features by considering information interaction between groups, significantly reducing computational complexity while guaranteeing model performance. Finally, our AFBO is built with GCCM and OCCM in an asymmetric way, aiming to achieve a better trade-off. Note that our AFBO is model-agnostic, which can be flexibly integrated with existing ViTs. Experiments are conducted with twenty ViTs on various tasks, and the results show our AFBO is superior to its counterparts while improving existing ViTs in terms of generalization and robustness.

Discrete diffusion has achieved state-of-the-art performance, outperforming or approaching autoregressive models on standard benchmarks. In this work, we introduce *Discrete Diffusion with Planned Denoising* (DDPD), a novel framework that separates the generation process into two models: a planner and a denoiser. At inference time, the planner selects which positions to denoise next by identifying the most corrupted positions in need of denoising, including both initially corrupted and those requiring additional refinement. This plan-and-denoise approach enables more efficient reconstruction during generation by iteratively identifying and denoising corruptions in the optimal order. DDPD outperforms traditional denoiser-only mask diffusion methods, achieving superior results on language modeling benchmarks such as *text8*, *OpenWebText*, and token-based generation on *ImageNet 256 × 256*. Notably, in language modeling, DDPD significantly reduces the performance gap between diffusion-based and autoregressive methods in terms of generative perplexity. Code is available at [github.com/liusulin/DDPD](https://github.com/liusulin/DDPD).

Language models (LMs) can “memorize” information, i.e., encode training data in their weights in such a way that inference-time queries can lead to verbatim regurgitation of that data. This ability to extract training data can be problematic, for example, when data are private or sensitive. In this work, we investigate methods to mitigate memorization: three regularizer-based, three fine-tuning-based, and eleven machine unlearning-based methods, with five of the latter being new methods that we introduce. We also introduce TinyMem, a suite of small, computationally-efficient LMs for the rapid development and evaluation of memorization-mitigation methods. We demonstrate that the mitigation methods that we develop using TinyMem can successfully be applied to production-grade LMs, and we determine via experiment that: regularizer-based mitigation methods are slow and ineffective at curbing memorization; fine-tuning-based methods are effective at curbing memorization, but overly expensive, especially for retaining higher accuracies; and unlearning-based methods are faster and more effective, allowing for the precise localization and removal of memorized information from LM weights prior to inference. We show, in particular, that our proposed unlearning method BalancedSubnet outperforms other mitigation methods at removing memorized information while preserving performance on target tasks.

We introduce D-FINE, a powerful real-time object detector that achieves outstanding localization precision by redefining the bounding box regression task in DETR models. D-FINE comprises two key components: Fine-grained Distribution Refinement (FDR) and Global Optimal Localization Self-Distillation (GO-LSD). FDR transforms the regression process from predicting fixed coordinates to iteratively refining probability distributions, providing a fine-grained intermediate representation that significantly enhances localization accuracy. GO-LSD is a bidirectional optimization strategy that transfers localization knowledge from refined distributions to shallower layers through self-distillation, while also simplifying the residual prediction tasks for deeper layers. Additionally, D-FINE incorporates lightweight optimizations in computationally intensive modules and operations, achieving a better balance between speed and accuracy. Specifically, D-FINE-L / X achieves 54.0% / 55.8% AP on the COCO dataset at 124 / 78 FPS on an NVIDIA T4 GPU. When pretrained on Objects365, D-FINE-L / X attains 57.1% / 59.3% AP, surpassing all existing real-time detectors. Furthermore, our method significantly enhances the performance of a wide range of DETR models by up to 5.3% AP with negligible extra parameters and training costs. Our code and models: https://github.com/Peterande/D-FINE.

Why do larger language models generalize better? To explore this question, we develop generalization bounds on the pretraining objective of large language models (LLMs) in the compute-optimal regime, as described by the Chinchilla scaling laws. We introduce a novel, fully empirical Freedman-type martingale concentration inequality that tightens existing bounds by accounting for the variance of the loss function. The generalization bound can be broken into three contributions: the number of parameters per token, the loss variance, and the quantization error at a fixed bitrate. As language models are scaled up, the number of parameters per data point stays constant; however, both the loss variance and the quantization error decrease, implying that larger models should have \emph{smaller} generalization gaps. We examine why larger models tend to be more quantizable from an information theoretic perspective, showing that the rate at which they can integrate new information grows slower than their capacity on the compute optimal frontier. From these findings we produce a scaling law for the generalization gap, showing that our bounds decrease in a predictable way.

Understanding how features evolve across layers in deep neural networks is a fundamental challenge in mechanistic interpretability, particularly due to polysemanticity and feature superposition. While Sparse Autoencoders (SAEs) have been used to extract interpretable features from individual layers, aligning these features across layers has remained an open problem. In this paper, we introduce SAE Match, a novel, data-free method for aligning SAE features across different layers of a neural network. Our approach involves matching features by minimizing the mean squared error between the folded parameters of SAEs, a technique that incorporates activation thresholds into the encoder and decoder weights to account for differences in feature scales. Through extensive experiments on the Gemma 2 language model, we demonstrate that our method effectively captures feature evolution across layers, improving feature matching quality. We also show that features persist over several layers and that our approach can approximate hidden states across layers. Our work advances the understanding of feature dynamics in neural networks and provides a new tool for mechanistic interpretability studies.

We frame code generation as a black-box optimization problem within the code space and demonstrate how optimization-inspired techniques can enhance inference scaling over text. Based on this perspective, we propose **SCATTERED FOREST SEARCH (SFS)**, a novel approach that improves solution diversity during evolutionary search, thereby avoiding local optima. Our theoretical analysis illustrates how these methods improve exploration and enhance efficiency. Extensive experiments on *HumanEval, MBPP, APPS, CodeContests,* and *Leetcode* reveal significant performance gains. For instance, our method achieves a **pass@1 rate of 67.1% on HumanEval+** and **87.2% on HumanEval with GPT-3.5**, marking improvements of **8.6%** and **4.3%** over the state-of-the-art, while also halving the iterations needed to find the correct solution. Furthermore, our approach scales more efficiently than existing search techniques, including **tree search, line search,** and **repeated sampling (Best of N)**.

Unsupervised representation learning has seen tremendous progress. However, it is constrained by its reliance on domain specific stationarity and topology, a limitation not found in biological intelligence systems. For instance, unlike computer vision, human vision can process visual signals sampled from highly irregular and non-stationary sensors. We introduce a novel framework that learns from high-dimensional data without prior knowledge of stationarity and topology. Our model, abbreviated as URLOST, combines a learnable self-organizing layer, spectral clustering, and a masked autoencoder (MAE). We evaluate its effectiveness on three diverse data modalities including simulated biological vision data, neural recordings from the primary visual cortex, and gene expressions. Compared to state-of-the-art unsupervised learning methods like SimCLR and MAE, our model excels at learning meaningful representations across diverse modalities without knowing their stationarity or topology. It also outperforms other methods that are not dependent on these factors, setting a new benchmark in the field. We position this work as a step toward unsupervised learning methods capable of generalizing across diverse high-dimensional data modalities.

Recent advancements in Multimodal Large Language Models (MLLMs) have accelerated the development of Graphical User Interface (GUI) agents capable of automating complex tasks across digital platforms. However, precise GUI element grounding remains a key challenge for accurate interaction and generalization. In this work, we present an effective GUI grounding framework, which includes an automated data collection engine that gathers extensive GUI screenshots and annotations to ensure broad generalization. We also propose a lightweight and flexible GUI grounding module designed to efficiently localize UI elements by pre-training on the collected data, and introduce a novel method to integrate this module with MLLMs for the effective execution of GUI tasks. Our approach demonstrates superior performance in task accuracy and adaptability, as validated by benchmarks such as ScreenSpot, MiniWob, AITW, and Mind2Web.

Adversarial training often suffers from a robustness-accuracy trade-off, where achieving high robustness comes at the cost of accuracy. One approach to mitigate this trade-off is leveraging invariance regularization, which encourages model invariance under adversarial perturbations; however, it still leads to accuracy loss. In this work, we closely analyze the challenges of using invariance regularization in adversarial training and understand how to address them. Our analysis identifies two key issues: (1) a "gradient conflict" between invariance and classification objectives, leading to suboptimal convergence, and (2) the mixture distribution problem arising from diverged distributions between clean and adversarial inputs. To address these issues, we propose Asymmetric Representation-regularized Adversarial Training (ARAT), which incorporates asymmetric invariance loss with stop-gradient operation and a predictor to avoid gradient conflict, and a split-BatchNorm (BN) structure to resolve the mixture distribution problem. Our detailed analysis demonstrates that each component effectively addresses the identified issues, offering novel insights into adversarial defense. ARAT shows superiority over existing methods across various settings. Finally, we discuss the implications of our findings to knowledge distillation-based defenses, providing a new perspective on their relative successes.

Offline goal-conditioned reinforcement learning (GCRL) is a major problem in reinforcement learning (RL) because it provides a simple, unsupervised, and domain-agnostic way to acquire diverse behaviors and representations from unlabeled data without rewards. Despite the importance of this setting, we lack a standard benchmark that can systematically evaluate the capabilities of offline GCRL algorithms. In this work, we propose OGBench, a new, high-quality benchmark for algorithms research in offline goal-conditioned RL. OGBench consists of 8 types of environments, 85 datasets, and reference implementations of 6 representative offline GCRL algorithms. We have designed these challenging and realistic environments and datasets to directly probe different capabilities of algorithms, such as stitching, long-horizon reasoning, and the ability to handle high-dimensional inputs and stochasticity. While representative algorithms may rank similarly on prior benchmarks, our experiments reveal stark strengths and weaknesses in these different capabilities, providing a strong foundation for building new algorithms. Project page: https://seohong.me/projects/ogbench

Egocentric video-language pretraining is a crucial step in advancing the understanding of hand-object interactions in first-person scenarios. Despite successes on existing testbeds, we find that current EgoVLMs can be easily misled by simple modifications, such as changing the verbs or nouns in interaction descriptions, with models struggling to distinguish between these changes. This raises the question: "Do EgoVLMs truly understand hand-object interactions?'' To address this question, we introduce a benchmark called $\textbf{EgoHOIBench}$, revealing the performance limitation of current egocentric models when confronted with such challenges. We attribute this performance gap to insufficient fine-grained supervision and the greater difficulty EgoVLMs experience in recognizing verbs compared to nouns. To tackle these issues, we propose a novel asymmetric contrastive objective named $\textbf{EgoNCE++}$. For the video-to-text objective, we enhance text supervision by generating negative captions using large language models or leveraging pretrained vocabulary for HOI-related word substitutions. For the text-to-video objective, we focus on preserving an object-centric feature space that clusters video representations based on shared nouns. Extensive experiments demonstrate that EgoNCE++ significantly enhances EgoHOI understanding, leading to improved performance across various EgoVLMs in tasks such as multi-instance retrieval, action recognition, and temporal understanding. Our code is available at https://github.com/xuboshen/EgoNCEpp.

The success of collaboration between humans and robots in shared environments relies on the robot's real-time adaptation to human motion. Specifically, in Social Navigation, the agent should be close enough to assist but ready to back up to let the human move freely, avoiding collisions. Human trajectories emerge as crucial cues in Social Navigation, but they are partially observable from the robot's egocentric view and computationally complex to process. We present the first Social Dynamics Adaptation model (SDA) based on the robot's state-action history to infer the social dynamics. We propose a two-stage Reinforcement Learning framework: the first learns to encode the human trajectories into social dynamics and learns a motion policy conditioned on this encoded information, the current status, and the previous action. Here, the trajectories are fully visible, i.e., assumed as privileged information. In the second stage, the trained policy operates without direct access to trajectories. Instead, the model infers the social dynamics solely from the history of previous actions and statuses in real-time. Tested on the novel Habitat 3.0 platform, SDA sets a novel state-of-the-art (SotA) performance in finding and following humans. The code can be found at https://github.com/L-Scofano/SDA.

Urban scene generation has been developing rapidly recently. However, existing methods primarily focus on generating static and single-frame scenes, overlooking the inherently dynamic nature of real-world driving environments. In this work, we introduce DynamicCity, a novel 4D occupancy generation framework capable of generating large-scale, high-quality dynamic 4D scenes with semantics. DynamicCity mainly consists of two key models. **1)** A VAE model for learning HexPlane as the compact 4D representation. Instead of using naive averaging operations, DynamicCity employs a novel **Projection Module** to effectively compress 4D features into six 2D feature maps for HexPlane construction, which significantly enhances HexPlane fitting quality (up to **12.56** mIoU gain). Furthermore, we utilize an **Expansion & Squeeze Strategy** to reconstruct 3D feature volumes in parallel, which improves both network training efficiency and reconstruction accuracy than naively querying each 3D point (up to **7.05** mIoU gain, **2.06x** training speedup, and **70.84\%** memory reduction). **2)** A DiT-based diffusion model for HexPlane generation. To make HexPlane feasible for DiT generation, a **Padded Rollout Operation** is proposed to reorganize all six feature planes of the HexPlane as a squared 2D feature map. In particular, various conditions could be introduced in the diffusion or sampling process, supporting **versatile 4D generation applications**, such as trajectory- and command-driven generation, inpainting, and layout-conditioned generation. Extensive experiments on the CarlaSC and Waymo datasets demonstrate that DynamicCity significantly outperforms existing state-of-the-art 4D occupancy generation methods across multiple metrics. The code and models have been released to facilitate future research.