ICLR 2025 Papers

International Conference on Learning Representations

Decision breakdown

3,703papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    2135.8%
  • Spotlight
    38010.3%
  • Poster
    3,11084.0%

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Meissonic: Revitalizing Masked Generative Transformers for Efficient High-Resolution Text-to-Image Synthesis

Jinbin Bai, Tian Ye, Wei Chow, Enxin Song, Qing-Guo Chen, Xiangtai Li, Zhen Dong, Lei Zhu, Shuicheng YAN

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We present Meissonic, which elevates non-autoregressive text-to-image Masked Image Modeling (MIM) to a level comparable with state-of-the-art diffusion models like SDXL. By incorporating a comprehensive suite of architectural innovations, advanced positional encoding strategies, and optimized sampling conditions, Meissonic substantially improves MIM's performance and efficiency. Additionally, we leverage high-quality training data, integrate micro-conditions informed by human preference scores, and employ feature compression layers to further enhance image fidelity and resolution. Our model not only matches but often exceeds the performance of existing methods in generating high-quality, high-resolution images. Extensive experiments validate Meissonic’s capabilities, demonstrating its potential as a new standard in text-to-image synthesis.

Poster
Efficient Active Imitation Learning with Random Network Distillation

Emilien Biré, Anthony Kobanda, Ludovic Denoyer, Rémy Portelas

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Developing agents for complex and underspecified tasks, where no clear objective exists, remains challenging but offers many opportunities. This is especially true in video games, where simulated players (bots) need to play realistically, and there is no clear reward to evaluate them. While imitation learning has shown promise in such domains, these methods often fail when agents encounter out-of-distribution scenarios during deployment. Expanding the training dataset is a common solution, but it becomes impractical or costly when relying on human demonstrations. This article addresses active imitation learning, aiming to trigger expert intervention only when necessary, reducing the need for constant expert input along training. We introduce Random Network Distillation DAgger (RND-DAgger), a new active imitation learning method that limits expert querying by using a learned state-based out-of-distribution measure to trigger interventions. This approach avoids frequent expert-agent action comparisons, thus making the expert intervene only when it is useful. We evaluate RND-DAgger against traditional imitation learning and other active approaches in 3D video games (racing and third-person navigation) and in a robotic locomotion task and show that RND-DAgger surpasses previous methods by reducing expert queries. https://sites.google.com/view/rnd-dagger

Poster
Rational Decision-Making Agent with Learning Internal Utility Judgment

Yining Ye, Xin Cong, Shizuo Tian, Yujia Qin, Chong Liu, Yankai Lin, Zhiyuan Liu, Maosong Sun

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With remarkable advancements, large language models (LLMs) have attracted significant efforts to develop LLM-based agents capable of executing intricate multi-step decision-making tasks. Existing approaches predominantly build upon the external performance measure to guide the decision-making process but the reliance on the external performance measure as prior is problematic in real-world scenarios, where such prior may be unavailable, flawed, or even erroneous. For genuine autonomous decision-making for LLM-based agents, it is imperative to develop rationality from their posterior experiences to judge the utility of each decision independently. In this work, we propose RaDAgent (Rational Decision-Making Agent), which fosters the development of its rationality through an iterative framework involving Experience Exploration and Utility Learning. Within this framework, Elo-based Utility Learning is devised to assign Elo scores to individual decision steps to judge their utilities via pairwise comparisons. Consequently, these Elo scores guide the decision-making process to derive optimal outcomes. Experimental results on the Game of 24, WebShop, ToolBench and RestBench datasets demonstrate RaDAgent’s superiority over baselines, achieving about 7.8% improvement on average. Besides, RaDAgent also can reduce costs (ChatGPT API calls), highlighting its effectiveness and efficiency.

Poster
OVTR: End-to-End Open-Vocabulary Multiple Object Tracking with Transformer

Jinyang Li, En Yu, Sijia Chen, Wenbing Tao

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Open-vocabulary multiple object tracking aims to generalize trackers to unseen categories during training, enabling their application across a variety of real-world scenarios. However, the existing open-vocabulary tracker is constrained by its framework structure, isolated frame-level perception, and insufficient modal interactions, which hinder its performance in open-vocabulary classification and tracking. In this paper, we propose OVTR (End-to-End Open-Vocabulary Multiple Object Tracking with TRansformer), the first end-to-end open-vocabulary tracker that models motion, appearance, and category simultaneously. To achieve stable classification and continuous tracking, we design the CIP (Category Information Propagation) strategy, which establishes multiple high-level category information priors for subsequent frames. Additionally, we introduce a dual-branch structure for generalization capability and deep multimodal interaction, and incorporate protective strategies in the decoder to enhance performance. Experimental results show that our method surpasses previous trackers on the open-vocabulary MOT benchmark while also achieving faster inference speeds and significantly reducing preprocessing requirements. Moreover, the experiment transferring the model to another dataset demonstrates its strong adaptability.

Poster
Neural Functions for Learning Periodic Signal

Woojin Cho, Minju Jo, Kookjin Lee, Noseong Park

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As function approximators, deep neural networks have served as an effective tool to represent various signal types. Recent approaches utilize multi-layer perceptrons (MLPs) to learn a nonlinear mapping from a coordinate to its corresponding signal, facilitating the learning of continuous neural representations from discrete data points. Despite notable successes in learning diverse signal types, coordinate-based MLPs often face issues of overfitting and limited generalizability beyond the training region, resulting in subpar extrapolation performance. This study addresses scenarios where the underlying true signals exhibit periodic properties, either spatially or temporally. We propose a novel network architecture, which extracts periodic patterns from measurements and leverages this information to represent the signal, thereby enhancing generalization and improving extrapolation performance. We demonstrate the efficacy of the proposed method through comprehensive experiments, including the learning of the periodic solutions for differential equations, and time series imputation (interpolation) and forecasting (extrapolation) on real-world datasets.

Poster
Ferret-UI 2: Mastering Universal User Interface Understanding Across Platforms

Zhangheng LI, Keen You, Haotian Zhang, Di Feng, Harsh Agrawal, Xiujun Li, Mohana Prasad Sathya Moorthy, Jeffrey Nichols, Yinfei Yang, Zhe Gan

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Building a generalist model for user interface (UI) understanding is challenging due to various foundational issues, such as platform diversity, resolution variation, and data limitation. In this paper, we introduce Ferret-UI 2, a multimodal large language model (MLLM) designed for universal UI understanding across a wide range of platforms, including iPhone, Android, iPad, Webpage, and AppleTV. Building on the foundation of Ferret-UI, Ferret-UI 2 introduces three key innovations: support for multiple platform types, high-resolution perception through adaptive scaling, and advanced task training data generation powered by GPT-4o with set-of-mark visual prompting. These advancements enable Ferret-UI 2 to perform complex, user-centered interactions, making it highly versatile and adaptable for the expanding diversity of platform ecosystems. Extensive empirical experiments on referring, grounding, user-centric advanced tasks (comprising 9 subtasks $\times$ 5 platforms), GUIDE next-action prediction dataset, and GUI-World multi-platform benchmark demonstrate that Ferret-UI 2 significantly outperforms Ferret-UI, and also shows strong cross-platform transfer capabilities.

Poster
ExACT: Teaching AI Agents to Explore with Reflective-MCTS and Exploratory Learning

Xiao Yu, Baolin Peng, Vineeth Vajipey, Hao Cheng, Michel Galley, Jianfeng Gao, Zhou Yu

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Autonomous agents have demonstrated significant potential in automating complex multistep decision-making tasks. However, even state-of-the-art vision-language models (VLMs), such as GPT-4o, still fall short of human-level performance, particularly in intricate web environments and long-horizon planning tasks. To address these limitations, we introduce Reflective Monte Carlo Tree Search (R-MCTS), a novel test-time algorithm designed to enhance the ability of AI agents, e.g., powered by GPT-4o, to explore decision space on the fly. R-MCTS extends traditional MCTS by 1) incorporating contrastive reflection, allowing agents to learn from past interactions and dynamically improve their search efficiency; and 2) using multi-agent debate to provide reliable state evaluation. Moreover, we improve the agent's performance by fine-tuning GPT-4o through self-learning, using R-MCTS generated tree traversals without any human-provided labels. On the challenging VisualWebArena benchmark, our GPT-4o-based R-MCTS agent achieves a 6% to 30% relative improvement across various tasks compared to the previous state-of-the-art. Additionally, we show that the knowledge gained from test-time search can be effectively transferred back to GPT-4o via fine-tuning. The fine-tuned GPT-4o matches 97\% of R-MCTS's performance while reducing compute usage by a factor of four at test time. Furthermore, qualitative results reveal that the fine-tuned GPT-4o model demonstrates the ability to explore the environment, evaluate a state, and backtrack to viable ones when it detects that the current state cannot lead to success. Moreover, our work demonstrates the compute scaling properties in both training - data collection with R-MCTS - and testing time. These results suggest a promising research direction to enhance VLMs' reasoning and planning capabilities for agentic applications via test-time search and self-learning.

Poster
Singular Subspace Perturbation Bounds via Rectangular Random Matrix Diffusions

Peiyao Lai, Oren Mangoubi

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Given a matrix $A \in \mathbb{R}^{m\times d}$ with singular values $\sigma_1\geq \cdots \geq \sigma_d$, and a random matrix $G \in \mathbb{R}^{m\times d}$ with iid $N(0,T)$ entries for some $T>0$, we derive new bounds on the Frobenius distance between subspaces spanned by the top-$k$ (right) singular vectors of $A$ and $A+G$. This problem arises in numerous applications in statistics where a data matrix may be corrupted by Gaussian noise, and in the analysis of the Gaussian mechanism in differential privacy, where Gaussian noise is added to data to preserve private information. We show that, for matrices $A$ where the gaps in the top-$k$ singular values are roughly $\Omega(\sigma_k-\sigma_{k+1})$ the expected Frobenius distance between the subspaces is $\tilde{O}(\frac{\sqrt{d}}{\sigma_k-\sigma_{k+1}} \times \sqrt{T})$, improving on previous bounds by a factor of $\frac{\sqrt{m}}{\sqrt{d}}$. To obtain our bounds we view the perturbation to the singular vectors as a diffusion process-- the Dyson-Bessel process-- and use tools from stochastic calculus to track the evolution of the subspace spanned by the top-$k$ singular vectors, which may be of independent interest.

Poster
Self-Normalized Resets for Plasticity in Continual Learning

Vivek Farias, Adam Daniel Jozefiak

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Plasticity Loss is an increasingly important phenomenon that refers to the empirical observation that as a neural network is continually trained on a sequence of changing tasks, its ability to adapt to a new task diminishes over time. We introduce Self-Normalized Resets (SNR), a simple adaptive algorithm that mitigates plasticity loss by resetting a neuron’s weights when evidence suggests its firing rate has effectively dropped to zero. Across a battery of continual learning problems and network architectures, we demonstrate that SNR consistently attains superior performance compared to its competitor algorithms. We also demonstrate that SNR is robust to its sole hyperparameter, its rejection percentile threshold, while competitor algorithms show significant sensitivity. SNR’s threshold-based reset mechanism is motivated by a simple hypothesis test we derive. Seen through the lens of this hypothesis test, competing reset proposals yield suboptimal error rates in correctly detecting inactive neurons, potentially explaining our experimental observations. We also conduct a theoretical investigation of the optimization landscape for the problem of learning a single ReLU. We show that even when initialized adversarially, an idealized version of SNR learns the target ReLU, while regularization based approaches can fail to learn.

Poster
Implicit In-context Learning

Zhuowei Li, Zihao Xu, Ligong Han, Yunhe Gao, Song Wen, Di Liu, Hao Wang, Dimitris N. Metaxas

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In-context Learning (ICL) empowers large language models (LLMs) to swiftly adapt to unseen tasks at inference-time by prefixing a few demonstration examples before queries. Despite its versatility, ICL incurs substantial computational and memory overheads compared to zero-shot learning and is sensitive to the selection and order of demonstration examples. In this work, we introduce \textbf{Implicit In-context Learning} (I2CL), an innovative paradigm that reduces the inference cost of ICL to that of zero-shot learning with minimal information loss. I2CL operates by first generating a condensed vector representation, namely a context vector, extracted from the demonstration examples. It then conducts an inference-time intervention through injecting a linear combination of the context vector and query activations back into the model’s residual streams. Empirical evaluation on nine real-world tasks across three model architectures demonstrates that I2CL achieves few-shot level performance at zero-shot inference cost, and it exhibits robustness against variations in demonstration examples. Furthermore, I2CL facilitates a novel representation of ``task-ids'', enhancing task similarity detection and fostering effective transfer learning. We also perform a comprehensive analysis and ablation study on I2CL, offering deeper insights into its internal mechanisms. Code is available at https://github.com/LzVv123456/I2CL.

Poster
SWE-Search: Enhancing Software Agents with Monte Carlo Tree Search and Iterative Refinement

Antonis Antoniades, Albert Örwall, Kexun Zhang, Yuxi Xie, Anirudh Goyal, William Yang Wang

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Software engineers operating in complex and dynamic environments must continuously adapt to evolving requirements, learn iteratively from experience, and reconsider their approaches based on new insights. However, current large language model (LLM)-based software agents often follow linear, sequential processes that prevent backtracking and exploration of alternative solutions, limiting their ability to rethink their strategies when initial approaches prove ineffective. To address these challenges, we propose SWE-Search, a multi-agent framework that integrates Monte Carlo Tree Search (MCTS) with a self-improvement mechanism to enhance software agents' performance on repository-level software tasks. SWE-Search extends traditional MCTS by incorporating a hybrid value function that leverages LLMs for both numerical value estimation and qualitative evaluation. This enables self-feedback loops where agents iteratively refine their strategies based on both quantitative numerical evaluations and qualitative natural language assessments of pursued trajectories. The framework includes a SWE-Agent for adaptive exploration, a Value Agent for iterative feedback, and a Discriminator Agent that facilitates multi-agent debate for collaborative decision-making. Applied to the SWE-bench benchmark, our approach demonstrates a 23% relative improvement in performance across five models compared to standard open-source agents without MCTS. Our analysis reveals how performance scales with increased inference-time compute through deeper search, providing a pathway to improve software agents without requiring larger models or additional training data. This highlights the potential of self-evaluation driven search techniques in complex software engineering environments.

Poster
3D StreetUnveiler with Semantic-aware 2DGS - a simple baseline

Jingwei Xu, Yikai Wang, Yiqun Zhao, Yanwei Fu, Shenghua Gao

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Unveiling an empty street from crowded observations captured by in-car cameras is crucial for autonomous driving. However, removing all temporarily static objects, such as stopped vehicles and standing pedestrians, presents a significant challenge. Unlike object-centric 3D inpainting, which relies on thorough observation in a small scene, street scene cases involve long trajectories that differ from previous 3D inpainting tasks. The camera-centric moving environment of captured videos further complicates the task due to the limited degree and time duration of object observation. To address these obstacles, we introduce StreetUnveiler to reconstruct an empty street. StreetUnveiler learns a 3D representation of the empty street from crowded observations. Our representation is based on the hard-label semantic 2D Gaussian Splatting (2DGS) for its scalability and ability to identify Gaussians to be removed. We inpaint rendered image after removing unwanted Gaussians to provide pseudo-labels and subsequently re-optimize the 2DGS. Given its temporal continuous movement, we divide the empty street scene into observed, partial-observed, and unobserved regions, which we propose to locate through a rendered alpha map. This decomposition helps us to minimize the regions that need to be inpainted. To enhance the temporal consistency of the inpainting, we introduce a novel time-reversal framework to inpaint frames in reverse order and use later frames as references for earlier frames to fully utilize the long-trajectory observations. Our experiments conducted on the street scene dataset successfully reconstructed a 3D representation of the empty street. The mesh representation of the empty street can be extracted for further applications.

Poster
Near-Optimal Policy Identification in Robust Constrained Markov Decision Processes via Epigraph Form

Toshinori Kitamura, Tadashi Kozuno, Wataru Kumagai, Kenta Hoshino, Yohei Hosoe, Kazumi Kasaura, Masashi Hamaya, Paavo Parmas, Yutaka Matsuo

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Designing a safe policy for uncertain environments is crucial in real-world control systems. However, this challenge remains inadequately addressed within the Markov decision process (MDP) framework. This paper presents the first algorithm guaranteed to identify a near-optimal policy in a robust constrained MDP (RCMDP), where an optimal policy minimizes cumulative cost while satisfying constraints in the worst-case scenario across a set of environments. We first prove that the conventional policy gradient approach to the Lagrangian max-min formulation can become trapped in suboptimal solutions. This occurs when its inner minimization encounters a sum of conflicting gradients from the objective and constraint functions. To address this, we leverage the epigraph form of the RCMDP problem, which resolves the conflict by selecting a single gradient from either the objective or the constraints. Building on the epigraph form, we propose a bisection search algorithm with a policy gradient subroutine and prove that it identifies an $\varepsilon$-optimal policy in an RCMDP with $\widetilde{\mathcal{O}}(\varepsilon^{-4})$ robust policy evaluations.

Poster
Bridging the Data Provenance Gap Across Text, Speech, and Video

Shayne Longpre, Nikhil Singh, Manuel Cherep, Kushagra Tiwary, Joanna Materzynska, William Brannon, Robert Mahari, Naana Obeng-Marnu, Manan Dey, Mohammed Hamdy, Nayan Saxena, Ahmad Mustafa Anis, Emad A. Alghamdi, Vu Minh Chien, Da Yin, Kun Qian, Yizhi Li, Minnie Liang, An Dinh, Shrestha Mohanty, Deividas Mataciunas, Tobin South, Jianguo Zhang, Ariel N. Lee, Campbell S. Lund, Christopher Klamm, Damien Sileo, Diganta Misra, Enrico Shippole, Kevin Klyman, Lester James Validad Miranda, Niklas Muennighoff, Seonghyeon Ye, Seungone Kim, Vipul Gupta, Vivek Sharma, Xuhui Zhou, Caiming Xiong, Luis Villa, Stella Biderman, Alex Pentland, Sara Hooker, Jad Kabbara

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Progress in AI is driven largely by the scale and quality of training data. Despite this, there is a deficit of empirical analysis examining the attributes of well-established datasets beyond text. In this work we conduct the largest and first-of-its-kind longitudinal audit across modalities --- popular text, speech, and video datasets --- from their detailed sourcing trends and use restrictions to their geographical and linguistic representation. Our manual analysis covers nearly 4000 public datasets between 1990-2024, spanning 608 languages, 798 sources, 659 organizations, and 67 countries. We find that multimodal machine learning applications have overwhelmingly turned to web-crawled, synthetic, and social media platforms, such as YouTube, for their training sets, eclipsing all other sources since 2019. Secondly, tracing the chain of dataset derivations we find that while less than 33% of datasets are restrictively licensed, over 80% of the source content in widely-used text, speech, and video datasets, carry non-commercial restrictions. Finally, counter to the rising number of languages and geographies represented in public AI training datasets, our audit demonstrates measures of relative geographical and multilingual representation have failed to significantly improve their coverage since 2013. We believe the breadth of our audit enables us to empirically examine trends in data sourcing, restrictions, and Western-centricity at an ecosystem-level, and that visibility into these questions are essential to progress in responsible AI. As a contribution to ongoing improvements in dataset transparency and responsible use, we release our entire multimodal audit, allowing practitioners to trace data provenance across text, speech, and video.

Poster
SLMRec: Distilling Large Language Models into Small for Sequential Recommendation

Wujiang Xu, Qitian Wu, Zujie Liang, Jiaojiao Han, Xuying Ning, Yunxiao Shi, Wenfang Lin, Yongfeng Zhang

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Sequential Recommendation (SR) task involves predicting the next item a user is likely to interact with, given their past interactions. The SR models examine the sequence of a user's actions to discern more complex behavioral patterns and temporal dynamics. Recent research demonstrates the great impact of LLMs on sequential recommendation systems, either viewing sequential recommendation as language modeling or serving as the backbone for user representation. Although these methods deliver outstanding performance, there is scant evidence of the necessity of a large language model and how large the language model is needed, especially in the sequential recommendation scene. Meanwhile, due to the huge size of LLMs, it is inefficient and impractical to apply a LLM-based model in real-world platforms that often need to process billions of traffic logs daily. In this paper, we explore the influence of LLMs' depth by conducting extensive experiments on large-scale industry datasets. Surprisingly, our motivational experiments reveal that most intermediate layers of LLMs are redundant, indicating that pruning the remaining layers can still maintain strong performance. Motivated by this insight, we empower small language models for SR, namely SLMRec, which adopt a simple yet effective knowledge distillation method. Moreover, SLMRec is orthogonal to other post-training efficiency techniques, such as quantization and pruning, so that they can be leveraged in combination. Comprehensive experimental results illustrate that the proposed SLMRec model attains the best performance using only 13\% of the parameters found in LLM-based recommendation models while simultaneously achieving up to 6.6x and 8.0x speedups in training and inference time costs, respectively. Besides, we provide a theoretical justification for why small language models can perform comparably to large language models in SR.

Poster
Natural Language Inference Improves Compositionality in Vision-Language Models

Paola Cascante-Bonilla, Yu Hou, Yang Trista Cao, Hal Daumé III, Rachel Rudinger

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Compositional reasoning in Vision-Language Models (VLMs) remains challenging as these models often struggle to relate objects, attributes, and spatial relationships. Recent methods aim to address these limitations by relying on the semantics of the textual description, using Large Language Models (LLMs) to break them down into subsets of questions and answers. However, these methods primarily operate on the surface level, failing to incorporate deeper lexical understanding while introducing incorrect assumptions generated by the LLM. In response to these issues, we present Caption Expansion with Contradictions and Entailments (CECE), a principled approach that leverages Natural Language Inference (NLI) to generate entailments and contradictions from a given premise. CECE produces lexically diverse sentences while maintaining their core meaning. Through extensive experiments, we show that CECE enhances interpretability and reduces overreliance on biased or superficial features. By balancing CECE along the original premise, we achieve significant improvements over previous methods without requiring additional fine-tuning, producing state-of-the-art results on benchmarks that score agreement with human judgments for image-text alignment, and achieving an increase in performance on Winoground of $+19.2\%$ (group score) and $+12.9\%$ on EqBen (group score) over the best prior work (finetuned with targeted data).

Poster
PhysPDE: Rethinking PDE Discovery and a Physical Hypothesis Selection Benchmark

Mingquan Feng, Yixin Huang, Yizhou Liu, Bofang Jiang, Junchi Yan

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Despite extensive research, recovering PDE expressions from experimental observations often involves symbolic regression. This method generally lacks the incorporation of meaningful physical insights, resulting in outcomes lacking clear physical interpretations. Recognizing that the primary interest of Machine Learning for Science (ML4Sci) often lies in understanding the underlying physical mechanisms or even discovering new physical laws rather than simply obtaining mathematical expressions, this paper introduces a novel ML4Sci task paradigm. This paradigm focuses on interpreting experimental data within the framework of prior physical hypotheses and theories, thereby guiding and constraining the discovery of PDE expressions. We have formulated this approach as a nonlinear mixed-integer programming (MIP) problem, addressed through an efficient search scheme developed for this purpose. Our experiments on newly designed Fluid Mechanics and Laser Fusion datasets demonstrate the interpretability and feasibility of this method.

Poster
Supervised and Semi-Supervised Diffusion Maps with Label-Driven Diffusion

Harel Mendelman, Ronen Talmon

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In this paper, we introduce Supervised Diffusion Maps (SDM) and Semi-Supervised Diffusion Maps (SSDM), which transform the well-known unsupervised dimensionality reduction algorithm, Diffusion Maps, into supervised and semi-supervised learning tools. The proposed methods, SDM and SSDM, are based on our new approach that treats the labels as a second view of the data. This unique framework allows us to incorporate ideas from multi-view learning. Specifically, we propose constructing two affinity kernels corresponding to the data and the labels. We then propose a multiplicative interpolation scheme of the two kernels, whose purpose is twofold. First, our scheme extracts the common structure underlying the data and the labels by defining a diffusion process driven by the data and the labels. This label-driven diffusion produces an embedding that emphasizes the properties relevant to the label-related task. Second, the proposed interpolation scheme balances the influence of the two kernels. We show on multiple benchmark datasets that the embedding learned by SDM and SSDM is more effective in downstream regression and classification tasks than existing unsupervised, supervised, and semi-supervised nonlinear dimension reduction methods.

Poster
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design

Chenyu Wang, Masatoshi Uehara, Yichun He, Amy Wang, Avantika Lal, Tommi Jaakkola, Sergey Levine, Aviv Regev, Hanchen, Tommaso Biancalani

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Recent studies have demonstrated the strong empirical performance of diffusion models on discrete sequences (i.e., discrete diffusion models) across domains such as natural language and biological sequence generation. For example, in the protein inverse folding task, where the goal is to generate a protein sequence from a given backbone structure, conditional diffusion models have achieved impressive results in generating "natural" sequences that fold back into the original structure. However, practical design tasks often require not only modeling a conditional distribution but also optimizing specific task objectives. For instance, in the inverse folding task, we may prefer proteins with high stability. To address this, we consider the scenario where we have pre-trained discrete diffusion models that can generate "natural" sequences, as well as reward models that map sequences to task objectives. We then formulate the reward maximization problem within discrete diffusion models, analogous to reinforcement learning (RL), while minimizing the KL divergence against pre-trained diffusion models to preserve naturalness. To solve this RL problem, we propose a novel algorithm that enables direct backpropagation of rewards through entire trajectories generated by diffusion models, by making the originally non-differentiable trajectories differentiable using the Gumbel-Softmax trick. Our theoretical analysis indicates that our approach can generate sequences that are both "natural" (i.e., have a high probability under a pre-trained model) and yield high rewards. While similar tasks have been recently explored in diffusion models for continuous domains, our work addresses unique algorithmic and theoretical challenges specific to discrete diffusion models, which arise from their foundation in continuous-time Markov chains rather than Brownian motion. Finally, we demonstrate the effectiveness of our algorithm in generating DNA and protein sequences that optimize enhancer activity and protein stability, respectively, important tasks for gene therapies and protein-based therapeutics. The code is available at https://github.com/ChenyuWang-Monica/DRAKES.

Poster
Synergy Between Sufficient Changes and Sparse Mixing Procedure for Disentangled Representation Learning

Zijian Li, Shunxing Fan, Yujia Zheng, Ignavier Ng, Shaoan Xie, Guangyi Chen, Xinshuai Dong, Ruichu Cai, Kun Zhang

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Disentangled representation learning aims to uncover the latent variables underlying observed data, yet identifying these variables under mild assumptions remains challenging. Some methods rely on sufficient changes in the distribution of latent variables indicated by auxiliary variables, such as domain indices, but acquiring enough domains is often impractical. Alternative approaches exploit the structural sparsity assumption on mixing processes, but this constraint may not hold in practice. Interestingly, we find that these two seemingly unrelated assumptions can actually complement each other. Specifically, when conditioned on auxiliary variables, the sparse mixing process induces independence between latent and observed variables, which simplifies the mapping from estimated to true latent variables and hence compensates for deficiencies of auxiliary variables. Building on this insight, we propose an identifiability theory with less restrictive constraints regarding the auxiliary variables and the sparse mixing process, enhancing applicability to real-world scenarios. Additionally, we develop a generative model framework incorporating a domain encoding network and a sparse mixing constraint and provide two implementations based on variational autoencoders and generative adversarial networks. Experiment results on synthetic and real-world datasets support our theoretical results.

Poster