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arXiv

Research-Oriented Human-Centric Evaluation for Foundation Models

Yijin Guo, Kaiyuan Ji, Xiaorong Zhu, Junying Wang, Farong Wen, Chunyi Li, Zicheng Zhang, Guangtao Zhai

Most current evaluations of foundation models focus on objective benchmarks, such as knowledge coverage and reasoning accuracy, often overlooking users' subjective experiences in human-AI collaboration. To address this gap, we propose a research-oriented Human-Centric Evaluation framework. It captures user perceptions across three core dimensions: problem-solving ability, information quality, and interaction experience, providing a structured, fine-grained approach to understanding how users evaluate and respond to model behavior in multi-modal research contexts. We conduct 604 human evaluation sessions across various disciplines, involving recent advanced foundation models. Through open-ended, time-limited collaborative tasks, we gather rich subjective assessments that highlight model capabilities and user preferences. Additionally, we perform an LLM-as-a-judge experiment and find that even sophisticated models struggle to accurately replicate human subjective judgment, emphasizing the irreplaceable value of first-person human assessment. Our project link is https://github.com/yijinguo/Human-Centric-Evaluation.

arXiv

From Papers to Panoramas: Building Hierarchies of Scientific Literature at Scale

Muhan Gao, Jash Shah, Weiqi Wang, Kuan-Hao Huang, Daniel Khashabi

Scientific knowledge is growing rapidly, making it difficult to track progress and high-level conceptual links across broad disciplines. While tools like citation networks and search engines help retrieve related papers, they lack the abstraction needed to capture the density and structure of activity across subfields. We motivate the goal of organizing broad swaths of scientific literature into a high-quality hierarchical structure that spans multiple levels of abstraction---from broad domains to specific studies. Such a representation can provide insights into which fields are well-explored and which are under-explored. To achieve this goal, we develop a hybrid approach that combines efficient embedding-based clustering with LLM-based prompting, striking a balance between scalability and semantic precision. Compared to LLM-heavy methods like iterative tree construction, our approach achieves superior quality-speed trade-offs. Our hierarchies capture different dimensions of research contributions, reflecting the interdisciplinary and multifaceted nature of modern science. We evaluate its utility by measuring how effectively an LLM-based agent can navigate the hierarchy to locate target papers. Results show that our method improves interpretability and offers an alternative pathway for exploring scientific literature beyond traditional search methods. Code, data and demo are available: https://github.com/JHU-CLSP/science-hierarchography

arXiv

Leveraging Few-Shot Learning and Large Language Models for Analyzing Blood Pressure Variations Across Biological Sex from Scientific Literature

Yuting Guo, Seyedeh Somayyeh Mousavi, Reza Sameni, Abeed Sarker

Current blood pressure (BP) technologies and standards were established decades ago, and these standards are still used worldwide today, often without adjusting BP readings for individual demographic factors such as sex and age. While these standards provide useful guidelines and help identify at-risk patients, they are not fully reliable for diagnosis due to the lack of demographic considerations. This study aims to assess the feasibility of using large language models (LLMs) for the automated extraction of BP-related information from the scientific literature, with a focus on biological sex-based distinctions in BP distributions. We employed natural language processing (NLP) methods to extract the means and standard deviations of BP values from the literature, distinguishing by biological sex. We developed a Solr-based search engine to retrieve scientific articles containing BP-related keywords and biological sex indicators from PubMed. From the retrieved articles, we created a manually reviewed subset comprising 213 articles including 90 cases that reported BP values based on biological sex. We experimented with one few-shot learning method and two zero-shot LLM-based methods---LLaMA3 and GPT-3.5---to extract the mean and standard deviations of BP values, and the associated biological sex. Based on the automatically-extracted information, we generated heatmaps and contour plots to study the variations of BP values across biological sex.

arXiv

Iterative Refinement Diffusion for Super-Resolved Data Assimilation of Multiscale Physical Systems

Mrigank Dhingra, Ramchandran Muthukumar, Rebecca Willett, Omer San

Recovering high-resolution states from sparse, low-resolution observations is a central challenge in scientific machine learning and data assimilation. Classical data assimilation exploits temporal information through forecast-analysis cycles, but often requires repeated access to expensive high-resolution forecast models. Generative super-resolution can recover unresolved structure from coarse observations, but is commonly used as a one-shot mapping that does not fully exploit constraints from past states. We introduce Iterative Refinement (IR), a learned data assimilation framework that combines these perspectives. Instead of performing a single coarse-to-fine reconstruction, IR decomposes the task into resolution-wise forecast-analysis operations across a multiresolution hierarchy. At each stage, a shared neural operator with resolution-dependent spectral mode slicing provides a dynamical prior, while a shared conditional diffusion corrector uses the current coarser-resolution state to produce a refined posterior at the next finer resolution. We evaluate IR on one-dimensional stochastically forced Burgers dynamics and two-dimensional Kraichnan turbulence. On the challenging 256x256 Kraichnan benchmark, IR achieves an RMSE of 0.184 and an SSIM of 0.836, outperforming spectral upsampling, one-shot diffusion super-resolution, enhanced deep super-resolution, and an autoregressive forecaster. On the more constrained Burgers testbed, IR remains competitive with one-shot diffusion, which achieves the lowest RMSE. These results show that one-shot generative reconstruction can be effective for simpler settings, while hierarchical forecast-analysis refinement becomes advantageous in strongly multiscale and underdetermined regimes. Overall, IR combines temporal priors, generative correction, and multiresolution reconstruction for learned data assimilation in complex physical systems.

arXiv

Generative Learning of Separatrices

Ellis R. Crabtree, Dimitris G. Giovanis, Anastasia Georgiou, George Datseris, Ioannis G. Kevrekidis

The identification and reconstruction of the boundaries separating basins of attraction in multistable, multidimensional dynamical systems presents a fundamental challenge in computational dynamics. These structures govern transition pathways and other important large timescale behavior, yet they remain typically under-sampled since their neighborhood does not get routinely visited during direct simulations. Traditional computational approaches face computational limitations in high-dimensional systems and require a priori knowledge of the dynamical system and its equations. Simplistic sampling methods such as random or uniform sampling of the phase space typically fail to quantitatively approximate separatrices and their structure altogether. We introduce and implement a framework that combines supervised classification with generative modeling to address this challenge. Our approach first trains neural network classifiers on uniformly or randomly sampled initial conditions labeled by their corresponding basins of attraction in the system of interest. Using uncertainty metrics of the trained classifier to quantify decision boundaries, the method then identifies these high uncertainty regions and boundaries of the classifier as preliminary approximate separatrices. Subsequently, score-based generative models are trained specifically on samples from high-uncertainty regions, ultimately generating densities of samples consistent with the empirical density of samples on or close to the manifold that constitutes the separatrix between basins in the sampled region. This approach leverages the complementary strengths of (a) discriminative models for global phase space partitioning and (b) generative models for detailed geometric sampling, resulting in a systematic, iterative, data-driven framework that produces empirically consistent reconstructions of (approximate) separatrix manifolds.

arXiv

PandasCorpus: A Resource of Real-World Pandas Workflows and Usage Patterns

Syrym Abdikhan, Mazhar Hameed

Pandas has emerged as the de facto library for data processing and machine learning, widely used for tasks, such as data loading, transformation, and analysis. Despite its ubiquity, there has been limited systematic investigation into how Pandas is used in real-world projects and how typical workflows are composed in practice. To address this gap, we introduce PandasCorpus, a dataset curated from GitHub repositories that captures real-world Pandas workflows at scale. In this work, a workflow refers to Pandas-based code contained in Jupyter notebooks, a prevalent medium for writing, executing, and sharing data analysis code. The dataset comprises 139k notebooks from approximately 100k repositories and captures more than 4M Pandas API calls spanning 136 distinct operations. Beyond dataset construction, we characterize workflows using structural and Pandas-specific features and analyze notebook evolution between 2015 and 2025. Our study examines code executability, notebook size, and recurring sequences of Pandas operations, providing empirical insights into how Pandas is used in practice. The resulting corpus offers a reusable resource for studying data analysis workflows, Pandas usage patterns, and library-aware code composition. Both the dataset and the extraction pipeline are publicly available via GitHub and Zenodo.

arXiv

Unraveling the Size Determination Mechanism of Nanocrystal Synthesis via Interpretable Neural Networks

Kai Gu, Haizheng Zhong

Deep learning models of nanocrystal synthesis enable the prediction of size and shape by encoding precursors and reaction conditions. However, their black-box nature hinders gaining deep insights into the underlying synthetic mechanisms. Here, we develop the Nanocrystal Equation Learner (NanoEQL), a fully white-box neural network to unravel the size determination mechanisms of nanocrystal synthesis. Building on the EQL architecture, eight operators are introduced to replace standard activation functions to fit the mathematical equations in nanocrystal synthesis. Among these operators, three smoothed operators address the gradient explosion of singular operators at zero. To evaluate the weights of different precursors, we develop a temperature-gated attention pooling strategy that encodes concentration-driven and reactivity-driven chemical synthesis mechanisms into the temperature gate. The NanoEQL model illustrates that the final nanocrystal size can be described by a linear equation composed of three scalars representing nanocrystallization capability (-Zp), growth capability (Zrea), and external input potential (-Zops). These interpretable scalars not only advance the rational design of nanocrystal synthesis but also establish a generalizable paradigm for deciphering chemical reaction mechanisms through white-box machine learning.

arXiv

AdsWorldEngine: A Self-Evolving Conversational Advertising Agent through Orchestrator and Tool Coevolution

Simiao Zuo, Chenhui Xu, Yimeng Jia, Qiang Lou, Jian Jiao, Denis Charles

Conversational advertising aims to deliver useful ads within multi-turn assistant interactions. Unlike conventional query-based advertising, where the user's intent is often expressed in a short standalone query, conversational ads must infer latent commercial intent from the current user query, the assistant response, and dialogue history while also deciding whether an ad would be helpful rather than intrusive. We propose AdsWorldEngine, an agentic framework for conversational advertising. AdsWorldEngine uses an Opportunity Gate to determine whether ads should be shown, an Orchestrator to generate commercial intents, call advertising tools, and construct a top-3 ad slate, and an Evaluator to score delivered ads for offline optimization. The central contribution is an iterative actor-tool training procedure: we first train the Orchestrator with supervised fine-tuning and agentic reinforcement learning, then use high- and low-reward rollouts to construct preference data to train tools. This creates a self-improving loop in which the system learns not only how to use advertising tools, but also how to improve them from rewarded behavior. To support subjective production decisions, we introduce label grounded judgment modeling, which trains judgment models from human labels collected under explicit guidelines. It enriches labels with thinking traces, filters inconsistent rationales through reflection, and further optimizes binary judgments with a cost sensitive GRPO variant that preserves asymmetric reward gaps. Offline, AdsWorldEngine improves diversity by 60% and relevance by 80% over the current production ad delivery system. In an online A/B test, it increases RPM by 22% and ads coverage by 74%.

arXiv

SDO: Subspace Deconflicting Operator for Multi-Adapter Composition

Zhongsheng Wang, Zhedong Lin, Qian Liu, Xinyu Zhang, Jiamou Liu

Composing independently trained adapters within a shared diffusion backbone provides a modular approach to multi-character generation, but naive joint deployment often causes identity mixing, cross-character attribute leakage, and unstable scene composition. We study this interference from a parameter-space perspective and hypothesize that it arises partly from conflicts between overlapping dominant subspaces in shared layers. To address this issue, we propose \textbf{SDO}, a \textbf{S}ubspace \textbf{D}econflicting \textbf{O}perator for multi-adapter composition. SDO reconstructs layer-wise low-rank updates from the selected adapters, extracts compact subspace signatures, measures pairwise conflict through output-subspace overlap, and applies a permutation-equivariant transformation that suppresses harmful shared directions while retaining identity-specific characteristics. The resulting representations are mapped back to standard adapter updates and can be directly incorporated into existing diffusion inference pipelines. Experiments demonstrate that SDO consistently improves identity fidelity and compositional stability, with particularly clear gains as the number of jointly composed adapters increases.

arXiv

Optimal Power Allocation and AI Receiver Design for Superimposed DMRS and Data Transmission

Sha Hu, Zhongwang Fu

In this paper, we consider transmissions with superimposed (SI) demodulation-reference-symbol (DMRS) and data in orthogonal frequency-division multiplexing (OFDM) based multiple-input multiple-output (MIMO) systems. First, we derive an analytical framework to characterize the iterative behavior between the mean-square errors (MSEs) of channel estimation (CE) and MIMO detection (MD) within an iterative CE and detection (ICED) process. This framework is subsequently utilized to optimize power allocation and pilot patterns between the DMRS and data symbols for SI-DMRS transmission. Second, we design an artificial intelligence (AI) based receiver built upon Transformer encoders for SI-DMRS transmissions, which incorporates an iterative CE and detection (ICED) structure. Simulation results demonstrate that the proposed AI-ICED receiver, combined with SI-DMRS, effectively increases spectral efficiency (SE) compared to conventional systems using non-overlapped DMRS and data symbols.

arXiv

FLARE MCMC: Fidelity-based Layer-Adaptive REcursive proposals for MCMC

Harini Venkatesan, Christian Shelton, Ming-Feng Ho, Simeon Bird, Mengxuan Wu

Markov chain Monte Carlo (MCMC) requires only the ability to evaluate the likelihood, making it a common technique for inference in complex models. However, it can have a slow mixing rate, requiring the generation of many samples to obtain good estimates and an overall high computational cost. FLARE MCMC is a multi-fidelity layered MCMC method that exploits lower-fidelity approximations of the true likelihood calculation to improve mixing and leads to overall faster performance. Such lower-fidelity likelihoods are commonly available in scientific and engineering applications where the model involves a simulation whose resolution or accuracy can be tuned. Our technique uses recursive, layered chains with simple layer tuning; it does not require the likelihood to take any form or have any particular internal mathematical structure. We demonstrate experimentally that FLARE MCMC achieves larger effective sample sizes for the same computational time across different scientific domains including hydrology and cosmology.

arXiv

Simulation-Aware In-Context Policy Improvement for LLM-Aided Analog Layout Refinement

Bingyang Liu, Ziming Wei, Xiaohan Gao, David Z. Pan

Analog IC layout design remains a labor-intensive iterative process dominated by simulation-driven refinement. Although end-to-end layout generators accelerate initial placement and routing, they still require experts to manually tune layout optimization parameters with repeated post-layout simulations for stringent design specifications. While Bayesian Optimization (BO) is widely adopted for parameter tuning in analog IC design, at the layout level it typically requires hundreds to thousands of evaluations, each involving costly parasitic extraction and post-layout simulation, which makes it impractical. Recently, Large Language Models (LLMs) have demonstrated potential in improving the sample efficiency of such simulation-driven tuning. However, their restricted access to geometric layout context and design-specific heuristics limits their ability to manipulate the layout optimization process. In this paper, we propose a simulation-aware LLM multi-agent framework that performs in-context policy improvement (ICPI) by iteratively updating layout optimization parameters exposed by an analog layout generator through an act-observe-reflect loop on compact structured layout representations. Experiments on real-world analog circuits show that, with only tens of post-layout simulations, our approach improves post-layout performance over the generator's built-in heuristics and BO-based tuning method.

arXiv

Explanation Multiplicity: Circuit-Level Interpretability Evidence Does Not Survive Defensible Analytic Variation

Ajay Pravin Mahale

The EU AI Act requires providers of high-risk systems to file technical documentation describing how the system reaches its decisions. Mechanistic interpretability is the obvious source of such evidence, and circuit discovery is its most developed instrument. We ask whether that evidence survives the condition under which it would be relied upon: two competent analysts, the same system, the same tool, different defensible settings. We pre-registered a crossed grid of seven analytic axes, every level taken from a published implementation, and mapped each discovered circuit through a deterministic claim map to a structured Annex IV statement. Across 15,840 pre-registered specifications on GPT-2 small and the indirect object identification task, of which 7,561 produced a claim, the derived statement flips across 73.2% of specification pairs (95% CI 0.725 to 0.738) and the modal claim commands 41.1% of the space. The evidence fails a filability criterion at every tolerance a conformity assessment body would plausibly accept. Standardising the single most influential choice, the evaluation metric, leaves the flip rate at 59.4%. Removing circuit size from the claim entirely and holding it fixed leaves 27.1% (95% CI 0.255 to 0.286), still above the pre-registered threshold. The circuits underlying these claims are structurally near-disjoint, median pairwise Jaccard overlap 4%, and functionally uncorrelated at Cohen's kappa 0.015, so the instability is not one mechanism described in different words. We give the filability criterion as a standalone protocol, and we report that one of the seven documented discovery objectives does not execute at all on the library's own canonical task. The study covers one model and one task, and whether the conclusion holds at scale is untested.

arXiv

Coverage Aware Active Evaluation for Failure Discovery with Paired Systems

Anjali Parashar, Rachel Luo, Apoorva Sharma, Sushant Veer, Edward Schmerling, Carson Sobolewski, Mingxin Yu, Chuchu Fan, Marco Pavone

Autonomous systems can fail in rare and heterogeneous ways, making real-world failure discovery difficult under limited testing budgets. Although cheaper proxies such as simulators, lower-fidelity systems, or related policies can be sampled extensively to find failures, proxy failures often do not transfer to the real world due to sim-to-real and system-to-system gaps. The key challenge is therefore to effectively leverage proxy system information for accurate prediction of severe target system failures. We propose an adaptive failure discovery method that combines proxy evaluations with limited target system results to guide scenario selection for target system testing. Our method learns a local predictor of target risk by correcting proxy failure signals using control-variate-inspired residual modeling. To find failures that are both likely and diverse, we combine this predictor with a support-aware mutual-information objective that favors realistic, well-supported regions while expanding coverage across failure modes. Across autonomous driving, manipulation, and quadruped velocity-tracking tasks, our method discovers up to 2$\times$ as many failures as random sampling and active-learning baselines, including severe and diverse failures missed by competing methods.

arXiv

Learning to Assemble Novel Structures with Unfamiliar Parts under Semantic Constraints

Jonghyuk Park, Alex Lascarides, Subramanian Ramamoorthy

This paper describes a neurosymbolic architecture for learning to assemble novel structures using evidence from embodied conversations and task demonstrations. We focus on scenarios where an agent encounters, after deployment, semantic constraints on structures--in other words, constraints as to which part types and features make valid structures--that were not available during training, and where it is initially unaware of the relevant structure and component part concepts. The agent must acquire and exploit such knowledge through user interactions while attempting assembly. We study this setting in a simulated toy truck assembly domain, learning from symbolic evidence encoded in natural language and from dense visual observations. Our experiments show that communicating semantic constraints through natural language (e.g., "dump trucks have a dumper") yields more data-efficient online adaptation than relying only on task demonstrations and/or only naming the parts through natural language.

arXiv

Second Thought: Reasoning in Parallel as LLM Agents Act and Observe

Zhensu Sun, Chengran Yang, Yunbo Lyu, Jieke Shi, David Lo

LLM agents in the ReAct paradigm alternate between reasoning, acting, and observing, but deliberate reasoning is confined to the Thought phase: while the agent serializes an action and waits for the environment, its reasoning is frozen. We identify this recurring interval for Action and Observation as a reasoning idle window and ask whether it can host additional reasoning in parallel that serves future turns. Therefore, we propose Second Thought, a training-free inference framework that forks four auxiliary branches the instant each Thought phase concludes, decodes them concurrently with the main loop, and merges the generated thoughts back when the environment observation arrives. In this way, Second Thought relocates the added reasoning off the main thread's sequential decoding path. Across three agentic benchmarks and three reasoning LLMs, Second Thought lowers the average turn count in all nine (model,benchmark) pairs and reduces main thread decoding in six of them by up to 43% (roughly 20% on average among those settings), while leaving it essentially unchanged in a seventh; Pass@1 shows no significant change in seven of nine pairs and the two significant differences are +12.4 and +10.2 points. Against a compute-matched control that forces an equivalent budget onto the main thread's own reasoning, it attains strictly higher Pass@1 with 1.3 to 3.2 less sequential decoding in all four settings where the control applies.

arXiv

Ontology-Grounded Project Memory for Coding Agents

James Adam

Coding agents have become the primary means of generating new code in many software projects, and the resulting velocity of changes makes keeping track of the reasons behind those changes challenging. This paper introduces MOOSEDev, a system designed to give coding agents structured, ontology-grounded project memory. The system captures architectural decisions, lessons, constraints, and rationales in a knowledge graph exposed to agents via a Model Context Protocol (MCP) interface. Records carry lifecycle status, provenance, and supersession links, queryable via MOOSE, a proprietary neurosymbolic engine that treats the symbolic layer as the primary reasoning substrate. We compared MOOSEDev against a production vector-memory tool on a neutral public corpus of 835 typed records. MOOSEDev returned the expected answer set essentially in full (0.98-1.00) on supersession, set-completeness, and negation questions, whereas the baseline's top-k retrieval surfaced between 6% and 27%. Conversely, relevance recall and token cost were largely equivalent between the two systems. We also describe a temporal commit-history bootstrap of our own codebase, a pre-registered live trial, and lessons learned.

arXiv

Exploring ESC Winners with Nested Diagrams

Anurag Sharma, Marcel Nöhre, Gerd Stumme

We present ConceptFlow, a scikit-learn-compatible Python library for Formal Concept Analysis that constructs and renders nested line diagrams from many-valued formal contexts. Given a many-valued context and a partition of its attributes into conceptual scales, ConceptFlow performs conceptual scaling, computes the factor lattices, identifies filled nodes of the corresponding subdirect product, and produces an interactive visualization. We apply ConceptFlow to the winners of the Eurovision Song Contest from 1975 to 2025, exploring relationships between voting patterns and musical characteristics. Voting support is captured by an outer scale spanning regional, cultural, historical, and political dimensions, while an inner scale captures musical characteristics via tempo and key. The resulting nested line diagram reveals implications across both scales, exposing dependencies between how winning entries were voted for and the musical properties they share.

arXiv

Your Probabilistic JEPA Is Secretly a Hidden Markov Model: A State-Space Interpretation of Joint-Embedding Predictive Learning

Yongchao Huang

A hidden Markov model (HMM) combines three roles: inference of a hidden-state belief from observations, propagation through a Markov transition, and emission back to observation space. We show that full, time-indexed Predictive Information Bottleneck VJEPA (PIB-VJEPA) exposes the same computational structure: a stochastic context encoder plays the role of an amortized filtering distribution, a probabilistic predictor defines latent-state dynamics, and a decoder, inverse target encoder, or induced implicit conditional supplies the emission direction. We distinguish 4 progressively stronger levels of correspondence and give sufficient conditions for exact sequence-level HMM equivalence. To make the connection concrete, we introduce Markov-Chain JEPA (MCJEPA), which replaces the latent predictor by a learned transition matrix; in the finite time-homogeneous case, matrix powers guarantee exact multi-horizon Chapman--Kolmogorov consistency. Conditioned discrete-state transitions, continuous-state Markov kernels, and continuous-time dynamics extend this construction, while deterministic temporal JEPA appears as a degenerate Dirac-kernel special case. We further interpret predictive information-bottleneck learning as seeking a compact predictive state: compression promotes minimality, while residual predictability tests sufficiency. Controlled experiments support transition composition, the filtering interpretation, predictive Markovization in a known synthetic process, and the distinction between JEPA latent prediction and HMM-style sequence learning. Together, these results give temporal JEPA a principled state-space interpretation.

arXiv

OGR-MARL: Option-Guided Residual Multi-Agent Reinforcement Learning for Heterogeneous USV Cooperative Pursuit in Constrained Port Waterways

Jiayang Mao, Lanfeng Wang, Zhao-Han Peng

Heterogeneous USV cooperative pursuit in constrained port waterways requires evader interception under navigation, traffic, and role constraints. This paper proposes OGR-MARL, an option-guided residual multi-agent reinforcement learning framework that is decoupled from a specific MARL algorithm. OGR-MARL integrates shared evader belief, role-conditioned option targets, adaptive rule penalties, and residual policy learning, allowing different MARL algorithms to learn corrective actions on top of rule-guided behaviors rather than exploring constrained port environments from scratch. We instantiate OGR-MARL with representative continuous-control MARL backbones, including MADDPG, MATD3, MAPPO, and MASAC, yielding OGR-MADDPG, OGR-MATD3, OGR-MAPPO, and OGR-MASAC. Experiments in an abstract Xiazhimen port-waterway scenario show that the OGR-MASAC instantiation achieves a 75.0% capture rate, promising mission-effective rule compliance, and the best heterogeneous coordination among the tested methods. Without retraining, zero-shot transfer to a QGIS/AIS-informed Xiazhimen map achieves promising results, demonstrating the generalization potential of OGR-MARL in more complex port scenarios.

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