NeurIPS 2026 Papers

Conference on Neural Information Processing Systems

Decision breakdown

6,437papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    991.5%
  • Spotlight
    2403.7%
  • Poster
    6,09894.7%

Browse all papers

Learning CLI Agents with Structured Action Credit under Selective Observation

Haoyang Su, Ying Wen

Expand abstract

Command line interface (CLI) agents are emerging as a practical paradigm for agent-computer interaction over evolving filesystems, executable command line programs, and online execution feedback. Recent work has used reinforcement learning (RL) to learn these interaction abilities from verifiable task feedback, yet few methods exploit the native structured attributes of CLI actions as learning signals. Beyond this underused action structure, CLI learning also couples two bottlenecks for coding agents. First, the agent must identify task-relevant evidence in a large codebase from partial observations. Second, sparse terminal rewards must be assigned to the actions that shape a long multi-turn trajectory. We study these bottlenecks through shell-driven information extraction and file editing tasks. For selective observation, we introduce $\sigma$-Reveal, an inference-time mechanism that selects token-budgeted context for the same CLI. For credit assignment, we propose Action Advantage Assignment ($\mathrm{A}^3$), a native agentic RL method that preserves the algorithmic complexity of standard agentic RL. $\mathrm{A}^3$ constructs turn-level advantages from episode-level relative feedback, abstract syntax tree (AST) based action sub-chain residuals, and tree-level trajectory margins. To further evaluate this problem setting, we construct ShellOps, a verifiable dataset suite covering CLI tasks in repository environments.

Poster
Learning Better Certified Models from Empirically-Robust Teachers

Alessandro De Palma

Expand abstract

Adversarial training attains strong empirical robustness to specific adversarial attacks by training on concrete adversarial perturbations, but it produces neural networks that are not amenable to strong robustness certificates through neural network verification. On the other hand, earlier certified training schemes directly train on bounds from network relaxations to obtain models that are certifiably robust, but display sub-par standard performance. Recent work has shown that state-of-the-art trade-offs between certified robustness and standard performance can be obtained through a family of losses combining adversarial outputs and neural network bounds. Nevertheless, differently from empirical robustness, verifiability still comes at a significant cost in standard performance. In this work, we propose to leverage empirically-robust teachers to improve the performance of certifiably-robust models through knowledge distillation. Using versatile feature-space distillation objectives, we show that distillation from adversarially-trained teachers can significantly improve the performance of state-of-the-art certified training algorithms for ReLU networks on robust computer vision benchmarks.

Poster
Learning Augmented Exact Exponential Algorithms

Tatiana Belova, Yuriy Dementiev, Danil Sagunov

Expand abstract

The field of learning-augmented algorithms has demonstrated that machine-learned predictions can bypass worst-case lower bounds across a wide range of problems. So far, however, the focus has been almost exclusively on *polynomial-time* algorithms, where predictions improve competitive ratios, approximation guarantees, or running times. In this paper, we raise the question of whether predictions can push the frontier of *exact exponential-time* algorithms for NP-hard problems. We answer this question affirmatively by proposing a *general approach* that augments an entire family of state-of-the-art exact algorithms for a variety of subset selection problems. We show that a noisy predictor that is only marginally better than random guessing suffices to provably reduce the search space, and that the resulting runtime speedup scales smoothly with the prediction quality. Importantly, our algorithms require only *pairwise* independence of predictions or, alternatively, do not require the knowledge of the predictor's accuracy–both strictly weaker and more realistic settings than typically assumed.

Poster
Learning Agentic World Vision-Language-Action Models for Autonomous Driving

Guoqing Wang, Pin Tang, Xiangxuan Ren, Chao Ma

Expand abstract

Recent progress in integrating vision-language-action (VLA) models with world modeling has significantly advanced end-to-end autonomous driving by allowing systems to reason about imagined futures instead of merely reacting to current observations. However, most world VLA models generate future frames at the pixel level with plenty of dense visual tokens. Although such generated futures can be visually plausible, they preserve many driving-irrelevant appearance details, i.e., only a small portion of the tokens directly encode planning-relevant factors, such as agent geometry, motion dynamics, and interactions. This introduces a significant performance bottleneck. An important question thus arises: what world state should a world VLA model reason over to support planning beyond pixel-level prediction? We argue that planning-oriented world modeling should focus on an agentic latent state that captures the interactions between objects in the driving scene over time. As such, we introduce AgentWorld, an agentic world VLA model that uses discrete agent tokens jointly for reasoning and trajectory planning. Each token is dynamically grounded to a surrounding agent associated with its object's state, such as semantic identity, 3D geometry, motion, and interaction context. AgentWorld learns these tokens through three key processes: explicit geometric grounding, reasoning-oriented supervised fine-tuning, and agent-oriented reinforcement learning. Extensive open-loop and closed-loop experiments under diverse driving scenarios show that AgentWorld enhances planning capabilities, fully exploits visual evidence and agent dynamics, and yields interpretable agentic world states. The code will be made publicly available.

Poster
Learning Actionable Information Landscapes for Multimodal Active Sensing in Hawkmoths

Abdo Sharafeldin, Yaqing Wang, Simon Sponberg, Hannah Choi

Expand abstract

Animals integrate information across sensory modalities to guide exploration, suggesting that they maintain internal estimates of where actions are expected to reduce uncertainty. However, how such action-conditioned information maps are learned from multimodal sensory experience remains unclear, as previous studies have been largely confined to unimodal sensing frameworks. We introduce a multimodal predictive-coding framework for learning uncertainty-reduction maps from visual and mechanosensory observations in hawkmoth flower interaction tasks. A variational generative model trained on simulated environments recovers modality-specific information landscapes over the action space, capturing how visual patterns, surface geometry, and mechanosensory cues shape the value of exploratory actions. These learned maps account for several features of hawkmoth behavior, including angled offsets during flower tracking, probing along visual patterns, and geometry-dependent changes in exploration. Applying the model to behavioral data from flower tracking and nectary search, we find that natural trajectories tend to occupy regions of high uncertainty reduction in these learned maps. Building on these observations, we develop an uncertainty-gated lexicographic algorithm that switches between information gathering and reward exploitation based on perceptual uncertainty. Across downstream reward-learning tasks, this policy learns faster, is more sample-efficient, and generalizes better to unseen environmental conditions than exploitation-only policies, $\epsilon$-greedy exploration, and non-lexicographic baselines. Together, these results suggest that multimodal generative perception models can learn actionable information landscapes that explain biological sensing and support exploration in embodied decision-making.

Poster
Learning Acceptable Lotteries via Queries: Minimizing Aggregated Violation Distances

Paul W. Goldberg, Nicholas Teh

Expand abstract

Randomization is often used to compromise among fixed policies, classifiers, or interventions, but affected stakeholders may be unable or unwilling to report utilities over all alternatives. We study a weaker feedback model in which, for each proposed lottery, each stakeholder reports only whether it is acceptable. Unlike prior work focused on finding a unanimously acceptable lottery when one exists, we allow unanimity to be impossible and seek lotteries that minimize aggregate acceptability violations. We model each stakeholder's acceptable lotteries by an unknown linear threshold rule over the lottery simplex, and the learner may only ask accept/reject queries. Since binary labels do not reveal utility shortfalls, and such shortfalls are not comparable across stakeholders, we measure violation geometrically: the Euclidean distance, within the affine hull of the simplex, to the stakeholder's normalized acceptance hyperplane. These distances are aggregated using the power mean. Our results characterize exactly which boundary information can be learned from these queries. A deterministic algorithm uses $\mathcal{O}(nm\log(m/\varepsilon))$ queries to recover the normalized boundary whenever violation distances are identifiable from query answers. Otherwise, queries determine the acceptable face but not the rate at which violation grows away from it; this ambiguity is unavoidable. When no ambiguity arises, the aggregate violation objective can be optimized exactly. When it does, we optimize a convex worst-case upper bound objective based on distance to the learned acceptable set and prove an additive loss bound of $\sqrt{2}(|B|/n)^{1/p}$. We also prove structural properties of optimal lotteries, including a support-size bound of $n+1$, and give a limited-budget algorithm with additive-$\alpha$ guarantees. Synthetic experiments illustrate the resulting breadth-depth tradeoff and the effect of the power-mean parameter $p$ on violation distribution.

Poster
Learned Lagrangian Models of PDEs via Euler–Lagrange Residual Minimization

Lyra Zhornyak, Eric Forgoston, M. Ani Hsieh

Expand abstract

We present the first method to directly use a learned continuous Lagrangian to forecast the dynamics of systems governed by partial differential equations, exploiting the inherent conservative structure to achieve stable long-range predictions. We develop an optimization-based integrator that minimizes the squared Euler--Lagrange residual via a mesh-free near-symplectic construction on local space-time patches. Different from integrators for analytical models, integrators for learned models should decouple model error (phase error) from integration error (conservation error). By relying on optimization rather than time-stepping, we bypass the global coupling inherent to fixed discretizations, which slows time- and space-stepping and complicates learning. Our method scales linearly with domain size via Jacobi iteration, and places no structural requirements on the learned network, allowing it to be coupled with existing physics-guided machine learning (ML) methods. We validate our approach on a learned representation of a double pendulum, a one-dimensional wave equation, and a two-dimensional wave equation. Our method achieves error comparable to classical symplectic methods while generalizing to spatially varying dynamics and arbitrary boundary conditions without retraining.

Spotlight
Learnable Low-Rank Polynomial Sketch for Effective Linear Attention

Zongyue Qin, Haoran Deng, Jason Cong, Yizhou Sun

Expand abstract

Softmax attention in Transformers suffers from quadratic complexity in sequence length, making it impractical for long-context applications. Linear attention alleviates this issue by replacing the exponential kernel with alternative functions that enable linear-time computation. Among existing linear attention approaches, recent studies have shown that polynomial kernels are particularly effective, as they exhibit sparse and spiky behavior similar to softmax attention, which emphasizes large dot products while suppressing irrelevant interactions. However, the exact computation of high-degree polynomial kernels is infeasible for high-dimensional representations. As a result, prior work relies on approximate polynomial kernels. This introduces a non-negligible approximation error. In this paper, we show that, from the perspective of polynomial kernel approximation, existing linear attention methods are still suboptimal. We propose Learnable Low-Rank Polynomial Sketch (LLoPS), a principled and flexible framework for approximating polynomial kernels with linear attention. Our method learns a low-rank polynomial sketch that provably achieves a strictly smaller approximation error than existing approaches. Experiment results show that LLoPS achieves the highest performance across extensive benchmarks, comparing with various linear attention baselines.

Poster
Learn from your own latents and not from tokens: A sample-complexity theory

Daniel Korchinski, Alessandro Favero, Matthieu Wyart

Expand abstract

Generative models, from diffusion models to large language models, achieve remarkable performance but at a cost in training data orders of magnitude larger than what biological learners require. An alternative paradigm has emerged in which networks are trained to predict their \emph{own} latent representations of related views or masked regions, as in data2vec and JEPA -- an idea related to predictive-coding accounts of the cortex. Despite strong empirical results, the theoretical understanding of these methods remains limited. Central questions include: by how much does latent prediction actually improve data efficiency? Is there a benefit to stacking such methods into multi-scale hierarchies? We answer both using as data a tractable probabilistic context-free grammar that captures the compositional structure of natural language and images. We prove that latent prediction recovers the full latent tree of depth $L$ from a number of samples scaling as $m^3$, where $m$ is the number of production rules per symbol. This is much fewer than the $m^L$ samples required by supervised learning and the $m^{L+1}$ required by token-level SSL. We confirm this bound with (i) a hierarchical clustering algorithm, (ii) an end-to-end neural network whose predictor-clusterer modules predict their own latents at each level via gradient descent, and (iii) the first sample-complexity analysis of data2vec, which we show implicitly performs hierarchical latent prediction. This suggests that explicit stacking such as H-JEPA is largely redundant.

Poster
Learn from Your Mistakes: Self-Correcting Masked Diffusion Models

Yair Schiff, Omer Belhasin, Roy Uziel, Guanghan Wang, Marianne Arriola, Gilad Turok, Ran Zilberstein, Miki Elad, Volodymyr Kuleshov

Expand abstract

Masked diffusion models (MDMs) have emerged as a promising alternative to autoregressive models, enabling parallel token generation while achieving competitive performance. Despite these advantages, MDMs face a fundamental limitation: once tokens are unmasked, they remain fixed, leading to error accumulation and ultimately degrading sample quality. We address this by proposing a framework that trains a model to perform both unmasking and correction. By reusing outputs from the MDM denoising network as inputs for corrector training, we train a model to recover from potential mistakes. During generation we apply additional corrective refinement steps between unmasking ones in order to change decoded tokens and improve outputs. We name our training and sampling method **Pro**gressive **Se**lf-**Co**rrection (**ProSeCo**) for its unique ability to iteratively refine an entire sequence, including already generated tokens. We conduct extensive experimental validation across multiple conditional and unconditional tasks, demonstrating that \method~yields better quality-efficiency trade-offs (up to ~4x faster sampling) and enables inference-time compute scaling to further increase sample quality beyond standard MDMs (up to ~1.2x improvement on benchmarks).

Poster
Learn Locally, Recurse Globally: Neural Circuit Synthesis Beyond Training Depth

Emile Richard

Expand abstract

Reasoning, planning, and agentic systems demand that neural models extrapolate from the easy training instances to harder, more compositional problem instances they encounter at deployment. Neural networks trained by gradient descent are reliable interpolators \emph{within} their training domain but struggle to extrapolate beyond it: they learn local generalizers even when global solutions are representable in their architecture class. We propose a \emph{learn locally, recurse globally} paradigm-: train a neural model on in-distribution sub-problems and apply it iteratively under a verifiable outer loop that decomposes hard instances into a sequence of in-distribution sub-instances and reassembles the result. We instantiate this paradigm in Boolean circuit synthesis from truth-tables, which we adopt as a faithful, controllable abstraction of logical reasoning: any propositional inference reduces to evaluating a Boolean circuit, and circuit \emph{depth} is a clean proxy for the difficulty of the underlying reasoning task. Empirically, a $2.2$M-parameter encoder-decoder Transformer trained on depth-$\leq 2$ circuits, wrapped in our outer loops, synthesizes circuits at $5\times$ training depth and at input arities for which the base model's encoder is too small for direct inference, with synthesis quality matching a standard EDA tool while producing markedly shallower circuits. We connect the algorithms to classical Boolean decomposition theory (Shannon, Ashenhurst-Curtis, Reed-Muller) and to recent formal results on the AC$^0$ barrier for constant-depth Transformers.

Poster
LeanSearch v2: Global Premise Retrieval for Lean 4 Theorem Proving

Guoxiong Gao, Zeming Sun, Jiedong Jiang, Yutong Wang, jd xu, Peihao Wu, Bryan Dai, Bin Dong

Expand abstract

Proving theorems in Lean 4 often requires identifying a scattered set of library lemmas whose joint use enables a concise proof---a task we call *global premise retrieval*. Existing tools address adjacent problems: semantic search engines find individual declarations matching a query, while premise-selection systems predict useful lemmas one tactic step at a time. Neither recovers the full premise set an entire theorem requires. We present LeanSearch v2, a two-mode retrieval system for this task. Its standard mode applies a hierarchy-informalized Mathlib corpus with an embedding--reranker pipeline, achieving state-of-the-art single-query retrieval without domain-specific fine-tuning (nDCG@10 of 0.62 vs. 0.53 for the next-best system). Its reasoning mode builds on standard mode as its retrieval substrate, targeting global premise retrieval through iterative sketch-retrieve-reflect cycles. On a 69-query benchmark of research-level Mathlib theorems, reasoning mode recovers 46.1% of ground-truth premise groups within 10 retrieved candidates, outperforming strong reasoning retrieval systems (38.0%) and premise-selection baselines (9.3%) on the same benchmark. In a controlled downstream evaluation with a fixed prover loop, replacing alternative retrievers with LeanSearch v2 yields the highest proof success (20% vs. 16% for the next-best system and 4% without retrieval), confirming that retrieval quality propagates to proof generation. All code, data, and benchmarks will be open-sourced.

Poster
Leak-CURBER: A Leakage-Controlled Multimodal Evaluation Benchmark for Enzymatic Reaction Tasks

Adhil Ahmed P M Shums, Roshan Balaji, Nirav Bhatt

Expand abstract

We present Leak-CURBER, the largest multimodal, leakage-controlled benchmark for evaluating machine learning and deep learning models for enzymatic reactions. Leak-CURBER standardizes data from 10 biochemical databases and curates datasets with multimodal inputs, metrics, and leakage-controlled splits for 4 tasks. The benchmark comprises 10 subtasks: prediction of reaction outcomes (2), enzyme function (2), kinetic parameters (3), and protein–ligand binding (3). Leak-CURBER establishes new evaluation protocols that control for train/validation/test overlap across protein sequence and structure, molecule string and structure, and reaction similarity, thereby exposing generalization failures of learning methods. Evaluating the state-of-the-art (SOTA) models on Leak-CURBER shows that their strong performance degrades sharply under these splits, often approaching random classification or retrieval performance, and near-zero regression performance. Leak-CURBER includes precomputed embeddings, continual benchmark releases, reproducible curation scripts, and a public leaderboard to support reliable comparison of enzymatic-reaction models.

Poster
Leaderboard Hacking: Preference-Based Model Evaluations are Vulnerable to Manipulation

Eve Fleisig, Joachim Baumann, Dylan Hadfield-Menell, Dirk Hovy

Expand abstract

Arena-style rankings of language models are a widely used evaluation framework in leaderboards like LMArena, research papers, and model evaluation in production. These rankings aim to realistically assess model performance using pairwise comparisons of anonymous models on user prompts, aggregating votes via the Bradley-Terry model to produce the final ranking. However, we find that these leaderboards are highly vulnerable to several manipulation strategies that unscrupulous providers could use to boost a model's rank: strategic voting (individual votes that boost a model's rank, including votes on irrelevant models), strategic prompting (choosing prompts that favor a model), and strategic nomination (boosting the rank of a model by inserting irrelevant models). We demonstrate these effects on public leaderboard data, analyze the circumstances that cause these vulnerabilities, and describe approaches to safeguard against each attack. Notably, these issues hold for any pairwise preference-based evaluation that uses the Bradley-Terry model. These manipulations boost the rank of nearly every tested model; each attack can boost a model by up to 15-21 places in a ranking and, combined, they can boost a model by up to 45 places.

Oral
LeWorldModel: Stable End-to-End Joint-Embedding Predictive Architecture from Pixels

Lucas Maes, Quentin Le Lidec, Damien Scieur, Yann LeCun, Randall Balestriero

Expand abstract

Joint Embedding Predictive Architectures (JEPAs) offer a compelling framework for learning world models in compact latent spaces, yet existing methods remain fragile, relying on complex multi-term losses, exponential moving averages, pre-trained encoders, or auxiliary supervision to avoid representation collapse. In this work, we introduce LeWorldModel (LeWM), the first JEPA that trains stably end-to-end from raw pixels using only two loss terms: a next-embedding prediction loss and a regularizer enforcing Gaussian-distributed latent embeddings. This reduces tunable loss hyperparameters from six to one compared to the only existing end-to-end alternative. With ~15M parameters trainable on a single GPU in a few hours, LeWM plans up to 48x faster than foundation-model-based world models while remaining competitive across diverse 2D and 3D control tasks. Beyond control, we show that LeWM's latent space encodes meaningful physical structure through probing of physical quantities. Surprise evaluation confirms that the model reliably detects physically implausible events.

Poster
LeCellModel: Interpretable Density Estimation over the Gene Expression Manifold

Gil Karin, Artemy Bakulin, Nir Yosef

Expand abstract

Representation learning for single-cell RNA-seq has been evaluated by the identities representations capture — cell types, lineages, perturbations — rather than how faithfully they model the distribution of cell states on the gene expression manifold. As a result, density estimation, rare-state detection, perturbation scoring, and gene-level attribution are bolted onto frozen embeddings as separate models, disconnected from the geometry of the data. We argue that the density model should be the primary object and that representation quality follows from it. Building on LeJEPA, whose SIGReg objective enforces a provably optimal isotropic Gaussian latent, we introduce LeCellModel, which exploits this Gaussian latent to recover data density on the gene expression manifold via the encoder's Jacobian log-volume (JEPA-SCORE). Across several datasets, LeCellModel outperforms established methods on scIB benchmark for representation quality. Furthermore, we show that LeCellModel enables estimation of rare expression states using JEPA-SCORE as a typicality measure – applying it to a controlled cytokine panel, where it identifies stimulated cells across minority fractions and tracks pathway-response magnitude. We introduce gene-level interpretability of density estimates — to our knowledge, the first method for analyzing JEPA-SCORE in feature space. Leveraging this framework, LeCellModel recapitulates the known association of a profibrotic macrophage program with idiopathic pulmonary fibrosis, and discovers a novel CD177$^{+}$ activated regulatory T cell subpopulation previously described only in tumor contexts. Both findings emerge directly from the geometry of the learned embedding, without relying on supervised annotations.

Poster
LeAct: Learning to Reason from Expert Actions

Ziran Yang, Chengshuai Shi, Raj Ghugare, Benjamin Eysenbach, Karthik Narasimhan, Chi Jin

Expand abstract

Modern reasoning models depend on reasoning data, today sourced from human annotations or distilled from stronger LLMs. However, a rich and largely untapped source of supervision lies in expert systems (e.g., game engines, classical planners, theorem provers), which routinely produce near-optimal actions across diverse domains. But these experts are silent: they commit to an action without writing down the chain of thought (CoT) behind it. Recovering that CoT as natural-language reasoning would distill expert knowledge into a student that generalizes beyond the demonstrated actions. We treat it as a latent variable and study how to recover it from the action alone. Our approach, LeAct (**Le**arning to reason from **Act**ions), optimizes this latent variable: the student samples candidate CoTs for each expert action, and we retain those that measurably improve its own probability of recovering the action. Across imperfect-information games at multiple scales and a simulated robotics benchmark, LeAct reaches the solver's numerical floor on small enumerable games. At larger scale, it is $5\times$ closer to the solver than the strongest expert-iteration baseline. At Flop Hold'em ($\sim 10^9$ infosets), LeAct wins head-to-head by $+60$ mbb/g, and on the robotics probe it is the only training recipe that improves on direct imitation. We present a principled framework and the result: expert systems become a categorically new source of reasoning teachers for foundation models.

Poster
LayoutBridge: Anisotropic Brownian Bridges for Public Indoor Floorplan Generation

Tongyang Dai, Ruipeng Gao, Feng Liu, Wenqiu Bai, Lingkun Li, Qiang Ni

Expand abstract

Compared with residential layouts, public indoor floorplans present more substantial challenges with open corridors, complex room relations, and non-Manhattan geometries, which do not conform to conventional residential-layout assumptions. Consequently, existing methods are prone to boundary discontinuities, leading to fragmented corridors and irregular wall structures. To address the above issues, we propose \textit{LayoutBridge}, a structure-conditioned generative framework for floorplan production. By moving beyond the Manhattan-geometry assumptions commonly adopted in residential scenarios, LayoutBridge reformulates the task as a latent-space Brownian-bridge diffusion process from structural constraints to target layouts. We have constructed our PISF dataset with 3,517 representative floorplans in public indoor spaces, and LayoutBridge reduces FID by 132.35 and improves BIoU by 15.52\% over the latest image-to-image baselines. Regarding the residential benchmarks MSD and RPLAN, it also reduces FID by at least 2.53 compared with state-of-the-art. These results demonstrate its potential for scalable automated architectural design. Code implementing the proposed method is publicly available at \href{http://github.com/lalalalaxxx/LayoutBridge}{http://github.com/lalalalaxxx/LayoutBridge}.

Poster
Layout Before Pixels: Topology-Anchored Transcriptome-to-Histology Generation

Jianwei Zhao, Xin Li, Fan Yang, Qiang Zhai, Ao Luo, Hong Cheng

Expand abstract

Transcriptome-conditioned whole-slide image (WSI) synthesis aims to decode the complex mapping from molecular states to histologic phenotypes. Existing generative paradigms predominantly rely on a direct black-box transcriptome-to-image mapping, tasking a single generator with the simultaneous interpretation of transcriptome signals, inference of multicellular spatial organization, and rendering of fine-grained textures. This formulation, however, is structurally under-constrained; the underlying tissue architecture, the critical substrate linking gene expression to morphology, remains latent and only weakly supervised by pixel-level objectives. We present \textsc{TopoScape}, a topology-anchored framework for transcriptome-to-histology generation under a \emph{Layout-Before-Pixels} principle. Instead of synthesizing pixels directly from transcriptomic embeddings, \textsc{TopoScape} first resolves molecular states into explicit, multi-class cellular topologies via an RNA-guided Topological Prior Generator, reinforced by persistence-based topological regularization. These resolved topologies are further reparameterized into a suite of topology-derived controls, including structure-aware initialization, continuous density fields, and distance representations, which guide a hierarchical, frequency-decoupled flow-matching trajectory. By introducing multicellular organization as an explicit structural mediator, \textsc{TopoScape} allows molecular states to deterministically shape both the macroscopic tissue architecture and the microscopic generative process. Across five TCGA benchmarks, \textsc{TopoScape} consistently outperforms state-of-the-art methods in generative fidelity, biological realism, and downstream predictive utility. Code and pretrained models will be released.

Poster
Layerwise Progressive Freezing: A Training Scaffold for Depth-Scalable Binary Networks

Evan G Smith, Bashima Islam

Expand abstract

Training binary neural networks (BNNs) from scratch is dominated by the straight-through estimator (STE), whose forward/backward mismatch produces severe accuracy degradation as networks deepen. We study an orthogonal axis: when and where binarization is enforced during training. We introduce StoMPP (Stochastic Masked Partial Progressive Binarization), which gradually replaces clipped weights and activations with their hard binary counterparts layer by layer from input to output, using stochastic partial masks with soft refresh. StoMPP delivers two complementary benefits. As a standalone training rule, it provides a fully STE-free procedure that improves over vanilla STE with gains that grow with depth (ResNet-50 BNN: +18.0/+13.5/+3.8 on CIFAR-10/100/ImageNet), and the pattern holds across ResNet-18/34/50, MobileNetV2, and BERT fine-tuning. Composed with surrogate gradients by applying STE only to frozen entries, it reaches +27.1/+19.8/+17.7 over vanilla STE on the same setting. Underlying both regimes is a single mechanistic finding: progression order is decisive. Forward layerwise progression prevents depth collapse, reverse progression collapses to near-chance, and binary-weight networks (without binary activations) are insensitive to order. We trace this asymmetry to activation-induced gradient blockades: a committed binary activation severs gradient flow upstream, and ordering controls when these blockades form. To isolate the progression's contribution from any benefit conferred by STE, we conduct all ablations in the STE-free regime; the resulting characterization (schedule, refresh, ordering, dynamics) thus reflects the progression itself rather than its interaction with surrogate gradients.

Poster