NeurIPS 2025 Papers

The shape of objects is an important source of visual information in a wide range of applications. One of the core challenges of shape quantification is to ensure that the extracted measurements remain invariant to transformations that preserve an object’s intrinsic geometry, such as changing its size, orientation, and position in the image. In this work, we introduce ShapeEmbed, a self-supervised representation learning framework designed to encode the contour of objects in 2D images, represented as a Euclidean distance matrix, into a shape descriptor that is invariant to translation, scaling, rotation, reflection, and point indexing. Our approach overcomes the limitations of traditional shape descriptors while improving upon existing state-of-the-art autoencoder-based approaches. We demonstrate that the descriptors learned by our framework outperform their competitors in shape classification tasks on natural and biological images. We envision our approach to be of particular relevance to biological imaging applications.

Recent cooperative perception datasets have played a crucial role in advancing smart mobility applications by enabling information exchange between intelligent agents, helping to overcome challenges such as occlusions and improving overall scene understanding. While some existing real-world datasets incorporate both vehicle-to-vehicle and vehicle-to-infrastructure interactions, they are typically limited to a single intersection or a single vehicle. A comprehensive perception dataset featuring multiple connected vehicles and infrastructure sensors across several intersections remains unavailable, limiting the benchmarking of algorithms in diverse traffic environments. Consequently, overfitting can occur, and models may demonstrate misleadingly high performance due to similar intersection layouts and traffic participant behavior. To address this gap, we introduce UrbanIng-V2X, the first large-scale, multi-modal dataset supporting cooperative perception involving vehicles and infrastructure sensors deployed across three urban intersections in Ingolstadt, Germany. UrbanIng-V2X consists of 34 temporally aligned and spatially calibrated sensor sequences, each lasting 20 seconds. All sequences contain recordings from one of three intersections, involving two vehicles and up to three infrastructure-mounted sensor poles operating in coordinated scenarios. In total, UrbanIng-V2X provides data from 12 vehicle-mounted RGB cameras, 2 vehicle LiDARs, 17 infrastructure thermal cameras, and 12 infrastructure LiDARs. All sequences are annotated at a frequency of 10 Hz with 3D bounding boxes spanning 13 object classes, resulting in approximately 712k annotated instances across the dataset. We provide comprehensive evaluations using state-of-the-art cooperative perception methods and publicly release the codebase, dataset, HD map, and a digital twin of the complete data collection environment via https://github.com/thi-ad/UrbanIng-V2X.

We study the dynamics of gradient flow with small weight decay on general training losses $F: \mathbb{R}^d \to \mathbb{R}$. Under mild regularity assumptions and assuming convergence of the unregularised gradient flow, we show that the trajectory with weight decay $\lambda$ exhibits a two-phase behaviour as $\lambda \to 0$. During the initial fast phase, the trajectory follows the unregularised gradient flow and converges to a manifold of critical points of $F$. Then, at time of order $1/\lambda$, the trajectory enters a slow drift phase and follows a Riemannian gradient flow minimising the $\ell_2$-norm of the parameters. This purely optimisation-based phenomenon offers a natural explanation for the \textit{grokking} effect observed in deep learning, where the training loss rapidly reaches zero while the test loss plateaus for an extended period before suddenly improving. We argue that this generalisation jump can be attributed to the slow norm reduction induced by weight decay, as explained by our analysis. We validate this mechanism empirically on several synthetic regression tasks.

Regulatory frameworks, such as the EU AI Act, encourage openness of general-purpose AI models by offering legal exemptions for "open-source" models. Despite this legislative attention on openness, the definition of open-source foundation models remains ambiguous. This paper presents a stylized model of the regulator's choice of an open-source definition in order to evaluate which standards will establish appropriate economic incentives for developers. In particular, we model the strategic interactions among the creator of the general-purpose model (the generalist) and the entity that fine-tunes the general-purpose model to a specialized domain or task (the specialist), in response to the regulator. Our results characterize market equilibria -- specifically, upstream model release decisions and downstream fine-tuning efforts -- under various openness policies and present an optimal range of open-source thresholds as a function of model performance. Overall, we identify a curve defined by initial model performance which determines whether increasing the regulatory penalty vs. increasing the open-source threshold will meaningfully alter the generalist's model release strategy. Our model provides a theoretical foundation for AI governance decisions around openness and enables evaluation and refinement of practical open-source policies.

Neural network architectures have a large impact in machine learning. However, in the specific case of reinforcement learning, network architectures have remained notably simple, as changes often lead to small gains in performance. This work introduces a novel encoder architecture for pixel-based model-free reinforcement learning. The Hadamax (\textbf{Hada}mard \textbf{max}-pooling) encoder achieves state-of-the-art performance by max-pooling Hadamard products between GELU-activated parallel hidden layers. Based on the recent PQN algorithm, the Hadamax encoder achieves state-of-the-art model-free performance in the Atari-57 benchmark. Specifically, without applying any algorithmic hyperparameter modifications, Hadamax-PQN achieves an 80\% performance gain over vanilla PQN and significantly surpasses Rainbow-DQN. For reproducibility, the full code is available on GitHub.

Spatial location and molecular interactions have long been linked to the connectivity patterns of neural circuits. Yet, at the macroscale of human brain networks, the interplay between spatial position, gene expression, and connectivity remains incompletely understood. Recent efforts to map the human transcriptome and connectome have yielded spatially resolved brain atlases, however modeling the relationship between high-dimensional transcriptomic data and connectivity while accounting for inherent spatial confounds presents a significant challenge. In this paper, we present the first deep learning approaches for predicting whole-brain functional connectivity from gene expression and regional spatial coordinates, including our proposed Spatiomolecular Transformer (SMT). SMT explicitly models biological context by tokenizing genes based on their transcription start site (TSS) order to capture multi-scale genomic organization, and incorporating regional 3D spatial location via a dedicated context [CLS] token within its multi-head self-attention mechanism. We rigorously benchmark context-aware neural networks, including SMT and a single-gene resolution Multilayer-Perceptron (MLP), to established rules-based and bilinear methods. Crucially, to ensure that learned relationships in any model are not mere artifacts of spatial proximity, we introduce novel spatiomolecular null maps, preserving both spatial and transcriptomic autocorrelation. Context-aware neural networks outperform linear methods, significantly exceed our stringent null shuffle models, and generalize across diverse connectomic datasets and parcellation resolutions. Together, these findings demonstrate a strong, predictable link between the spatial distributions of gene expression and functional brain network architecture, and establish a rigorously validated deep learning framework for decoding this relationship. Code to reproduce our results is available at: github.com/neuroinfolab/GeneEx2Conn.

Existing feedforward subject-driven video customization methods mainly study single-subject scenarios due to the difficulty of constructing multi-subject training data pairs. Another challenging problem that how to use the signals such as depth, mask, camera, and text prompts to control and edit the subject in the customized video is still less explored. In this paper, we first propose a data construction pipeline, VideoCus-Factory, to produce training data pairs for multi-subject customization from raw videos without labels and control signals such as depth-to-video and mask-to-video pairs. Based on our constructed data, we develop an Image-Video Transfer Mixed (IVTM) training with image editing data to enable instructive editing for the subject in the customized video. Then we propose a diffusion Transformer framework, OmniVCus, with two embedding mechanisms, Lottery Embedding (LE) and Temporally Aligned Embedding (TAE). LE enables inference with more subjects by using the training subjects to activate more frame embeddings. TAE encourages the generation process to extract guidance from temporally aligned control signals by assigning the same frame embeddings to the control and noise tokens. Experiments demonstrate that our method significantly surpasses state-of-the-art methods in both quantitative and qualitative evaluations. Project page is at https://caiyuanhao1998.github.io/project/OmniVCus/

Deep Neural Networks (DNN) have emerged as an effective approach to implementing challenging subproblems. They are increasingly being used as components in critical transportation, medical, and military systems. However, like human-written software, DNNs may have flaws that can lead to unsafe system performance. To confidently deploy DNNs in such systems, strong evidence is needed that they do not contain such flaws. This has led researchers to explore the adaptation and customization of software verification approaches to the problem of neural network verification (NNV). Many dozens of NNV tools have been developed in recent years and as a field these techniques have matured to the point where realistic networks can be analyzed to detect flaws and to prove conformance with specifications. NNV tools are highly-engineered and complex may harbor flaws that cause them to produce unsound results. We identify commonalities in algorithmic approaches taken by NNV tools to define a verifier independent proof format---activation pattern tree proofs (APTP)---and design an algorithm for checking those proofs that is proven correct and optimized to enable scalable checking. We demonstrate that existing verifiers can efficiently generate APTP proofs, and that an APTPchecker significantly outperforms prior work on a benchmark of 16 neural networks and 400 NNV problems, and that it is robust to variation in APTP proof structure arising from different NNV tools. APTPchecker is available at: https://github.com/dynaroars/APTPchecker.

Manipulation in cluttered environments is challenging due to spatial dependencies among objects, where an improper manipulation order can cause collisions or blocked access. Existing approaches often overlook these spatial relationships, limiting their flexibility and scalability. To address these limitations, we propose OrderMind, a unified spatial-aware manipulation ordering framework that directly learns object manipulation priorities based on spatial context. Our architecture integrates a spatial context encoder with a temporal priority structuring module. We construct a spatial graph using k-Nearest Neighbors to aggregate geometric information from the local layout and encode both object-object and object-manipulator interactions to support accurate manipulation ordering in real-time. To generate physically and semantically plausible supervision signals, we introduce a spatial prior labeling method that guides a vision-language model to produce reasonable manipulation orders for distillation. We evaluate OrderMind on our Manipulation Ordering Benchmark, comprising 163,222 samples of varying difficulty. Extensive experiments in both simulation and real-world environments demonstrate that our method significantly outperforms prior approaches in effectiveness and efficiency, enabling robust manipulation in cluttered scenes.

We propose VASA-3D, an audio-driven, single-shot 3D head avatar generator. This research tackles two major challenges: capturing the subtle expression details present in real human faces, and reconstructing an intricate 3D head avatar from a single portrait image. To accurately model expression details, VASA-3D leverages the motion latent of VASA-1, a method that yields exceptional realism and vividness in 2D talking heads. A critical element of our work is translating this motion latent to 3D, which is accomplished by devising a 3D head model that is conditioned on the motion latent. Customization of this model to a single image is achieved through an optimization framework that employs numerous video frames of the reference head synthesized from the input image. The optimization takes various training losses robust to artifacts and limited pose coverage in the generated training data. Our experiment shows that VASA-3D produces realistic 3D talking heads that cannot be achieved by prior art, and it supports the online generation of 512x512 free-viewpoint videos at up to 75 FPS, facilitating more immersive engagements with lifelike 3D avatars.

Continual learning aims to learn multiple tasks sequentially while preserving prior knowledge, but faces the challenge of catastrophic forgetting when adapting to new tasks. Recently, approaches leveraging pre-trained models have gained increasing popularity in mitigating this issue, due to the strong generalization ability of foundation models. To adjust pre-trained models for new tasks, existing methods usually employ low-rank adaptation, which restricts parameter updates to a fixed low-rank subspace. However, constraining the optimization space inherently compromises the model's learning capacity, resulting in inferior performance. To address this limitation, we propose Continuous Subspace Optimization for Continual Learning (CoSO) to fine-tune the model in a series of subspaces rather than a single one. These sequential subspaces are dynamically determined through the singular value decomposition of the gradients. CoSO updates the model by projecting gradients onto these subspaces, ensuring memory-efficient optimization. To mitigate forgetting, the optimization subspace of each task is constrained to be orthogonal to the historical task subspace. During task learning, CoSO maintains a task-specific component that captures the critical update directions for the current task. Upon completing a task, this component is used to update the historical task subspace, laying the groundwork for subsequent learning. Extensive experiments on multiple datasets demonstrate that CoSO significantly outperforms state-of-the-art methods, especially in challenging scenarios with long task sequences.

Pathology foundation models (PFMs) have emerged as powerful tools for analyzing whole slide images (WSIs). However, adapting these pretrained PFMs for specific clinical tasks presents considerable challenges, primarily due to the availability of only weak (WSI-level) labels for gigapixel images, necessitating multiple instance learning (MIL) paradigm for effective WSI analysis. This paper proposes a novel approach for single-GPU \textbf{T}ask \textbf{A}daptation of \textbf{PFM}s (TAPFM) that uses vision transformer (\vit) attention for MIL aggregation while optimizing both for feature representations and attention weights. The proposed approach maintains separate computational graphs for MIL aggregator and the PFM to create stable training dynamics that align with downstream task objectives during end-to-end adaptation. Evaluated on mutation prediction tasks for bladder cancer and lung adenocarcinoma across institutional and The Cancer Genome Atlas (TCGA) cohorts, TAPFM consistently outperforms conventional approaches, with H-Optimus-0 (TAPFM) outperforming the benchmarks. TAPFM effectively handles multi-label classification of actionable mutations as well. Thus, TAPFM makes adaptation of powerful pre-trained PFMs practical on standard hardware for various clinical applications.

Morphing is a long-standing problem in vision and computer graphics, requir- ing a time-dependent warping for feature alignment and a blending for smooth interpolation. Recently, multilayer perceptrons (MLPs) have been explored as implicit neural representations (INRs) for modeling such deformations, due to their meshlessness and differentiability; however, extracting coherent and accurate morphings from standard MLPs typically relies on costly regularizations, which often lead to unstable training and prevent effective feature alignment. To overcome these limitations, we propose FLOWING (FLOW morphING), a framework that recasts warping as the construction of a differential vector flow, naturally ensuring continuity, invertibility, and temporal coherence by encoding structural flow prop- erties directly into the network architectures. This flow-centric approach yields principled and stable transformations, enabling accurate and structure-preserving morphing of both 2D images and 3D shapes. Extensive experiments across a range of applications—including face and image morphing, as well as Gaussian Splatting morphing—show that FLOWING achieves state-of-the-art morphing quality with faster convergence. Code and pretrained models are available in https://schardong.github.io/flowing.

Masked-based autoregressive models have demonstrated promising image generation capability in continuous space. However, their potential for video generation remains under-explored. Masked-based autoregressive models have demonstrated promising image generation capability in continuous space. However, their potential for video generation remains under-explored. In this paper, we propose \textbf{VideoMAR}, a concise and efficient decoder-only autoregressive image-to-video model with continuous tokens, composing temporal frame-by-frame and spatial masked generation. We first identify temporal causality and spatial bi-directionality as the first principle of video AR models, and propose the next-frame diffusion loss for the integration of mask and video generation. Besides, the huge cost and difficulty of long sequence autoregressive modeling is a basic but crucial issue. To this end, we propose the temporal short-to-long curriculum learning and spatial progressive resolution training, and employ progressive temperature strategy at inference time to mitigate the accumulation error. Furthermore, VideoMAR replicates several unique capacities of language models to video generation. It inherently bears high efficiency due to simultaneous temporal-wise KV cache and spatial-wise parallel generation, and presents the capacity of spatial and temporal extrapolation via 3D rotary embeddings. On the VBench-I2V benchmark, VideoMAR surpasses the previous state-of-the-art (Cosmos I2V) while requiring significantly fewer parameters ($9.3\%$), training data ($0.5\%$), and GPU resources ($0.2\%$).

Text-to-image (T2I) diffusion models have achieved impressive image generation quality and are increasingly fine-tuned for personalized applications. However, these models often inherit unsafe behaviors from toxic pretraining data, raising growing safety concerns. While recent safety-driven unlearning methods have made promising progress in suppressing model toxicity, they are found to be fragile to downstream fine-tuning, as we reveal that state-of-the-art methods largely fail to retain their effectiveness even when fine-tuned on entirely benign datasets. To mitigate this problem, in this paper, we propose ResAlign, a safety-driven unlearning framework with enhanced resilience against downstream fine-tuning. By modeling downstream fine-tuning as an implicit optimization problem with a Moreau envelope-based reformulation, ResAlign enables efficient gradient estimation to minimize the recovery of harmful behaviors. Additionally, a meta-learning strategy is proposed to simulate a diverse distribution of fine-tuning scenarios to improve generalization. Extensive experiments across a wide range of datasets, fine-tuning methods, and configurations demonstrate that ResAlign consistently outperforms prior unlearning approaches in retaining safety, while effectively preserving benign generation capability. Our code and pretrained models are publicly available at https://github.com/AntigoneRandy/ResAlign.

Recent advancements have suggested that neural radiance fields (NeRFs) show great potential in color editing within the 3D domain. However, most existing NeRF-based editing methods continue to face significant challenges in local region editing, which usually lead to imprecise local object boundaries, difficulties in maintaining multi-view consistency, and over-reliance on annotated data. To address these limitations, in this paper, we propose a novel weakly-supervised method called KaRF for local color editing, which facilitates high-fidelity and realistic appearance edits in arbitrary regions of 3D scenes. At the core of the proposed KaRF approach is a unified two-stage Kolmogorov-Arnold Networks (KANs)-based radiance fields framework, comprising a segmentation stage followed by a local recoloring stage. This architecture seamlessly integrates geometric priors from NeRF to achieve weakly-supervised learning, leading to superior performance. More specifically, we propose a residual adaptive gating KAN structure, which integrates KAN with residual connections, adaptive parameters, and gating mechanisms to effectively enhance segmentation accuracy and refine specific editing effects. Additionally, we propose a palette-adaptive reconstruction loss, which can enhance the accuracy of additive mixing results. Extensive experiments demonstrate that the proposed KaRF algorithm significantly outperforms many state-of-the-art methods both qualitatively and quantitatively. Our code and more results are available at: https://github.com/PaiDii/KARF.git.

We study the problem of contextual combinatorial semi-bandits, where input contexts are mapped into subsets of size $m$ of a collection of $K$ possible actions. In each round of the interaction, the learner observes feedback consisting of the realized reward of the predicted actions. Motivated by prototypical applications of contextual bandits, we focus on the $s$-sparse regime where we assume that the sum of rewards is bounded by some value $s \ll K$. For example, in recommendation systems the number of products purchased by any customer is significantly smaller than the total number of available products. Our main result is for the $(\varepsilon,\delta)$-PAC variant of the problem for which we design an algorithm that returns an $\varepsilon$-optimal policy with high probability using a sample complexity of $\widetilde{O}\big( (\mathrm{poly}(K/m) + sm / \varepsilon^2) \log (|\Pi|/\delta) \big)$ where $\Pi$ is the underlying (finite) class and $s$ is the sparsity parameter. This bound improves upon known bounds for combinatorial semi-bandits whenever $s \ll K$, and in the regime where $s = O(1)$, the leading terms in our bound match the corresponding full-information rates, implying that bandit feedback essentially comes at no cost. Our PAC learning algorithm is also computationally efficient given access to an ERM oracle for $\Pi$. Our framework generalizes the list multiclass classification problem with bandit feedback, which can be seen as a special case with binary reward vectors. In the special case of single-label classification corresponding to $s=m=1$, we prove an $O \big((K^7 + 1/\varepsilon^2)\log (|\mathcal{H}|/\delta)\big)$ sample complexity bound for a finite hypothesis class $\mathcal{H}$, which improves upon recent results in this scenario. Additionally, we consider the regret minimization setting where data can be generated adversarially, and establish a regret bound of $\widetilde O(|\Pi| + \sqrt{smT \log |\Pi|})$, extending the result of Erez et al. ('24) who consider the simpler single label classification setting.

Recent advances in 3D Gaussian diffusion models suffer from time-intensive denoising and post-denoising processing due to the massive number of Gaussian primitives, resulting in slow generation and limited scalability along sampling trajectories. To improve the efficiency of 3D diffusion models, we propose $\textbf{TRIM}$ ($\textbf{T}$rajectory $\textbf{R}$eduction and $\textbf{I}$nstance $\textbf{M}$ask denoising), a post-training approach that incorporates both temporal and spatial trimming strategies, to accelerate inference without compromising output quality while supporting the inference-time scaling for Gaussian diffusion models. Instead of scaling denoising trajectories in a costly end-to-end manner, we develop a lightweight selector model to evaluate latent Gaussian primitives derived from multiple sampled noises, enabling early trajectory reduction by selecting candidates with high-quality potential. Furthermore, we introduce instance mask denoising to prune learnable Gaussian primitives by filtering out redundant background regions, reducing inference computation at each denoising step. Extensive experiments and analysis demonstrate that TRIM significantly improves both the efficiency and quality of 3D generation.

Unsupervised Graph Domain Adaptation has become a promising paradigm for transferring knowledge from a fully labeled source graph to an unlabeled target graph. Existing graph domain adaptation models primarily focus on the closed-set setting, where the source and target domains share the same label spaces. However, this assumption might not be practical in the real-world scenarios, as the target domain might include classes that are not present in the source domain. In this paper, we investigate the problem of unsupervised open-set graph domain adaptation, where the goal is to not only correctly classify target nodes into the known classes, but also recognize previously unseen node types into the unknown class. Towards this end, we propose a novel framework called GraphRTA, which conducts reprogramming on both the graph and model sides. Specifically, we reprogram the graph by modifying target graph structure and node features, which facilitates better separation of known and unknown classes. Meanwhile, we also perform model reprogramming by pruning domain-specific parameters to reduce bias towards the source graph while preserving parameters that capture transferable patterns across graphs. Additionally, we extend the classifier with an extra dimension for the unknown class, thus eliminating the need of manually specified threshold in open-set recognition. Comprehensive experiments on several public datasets demonstrate that our proposed model can achieve satisfied performance compared with recent state-of-the-art baselines. Our source codes and datasets are publicly available at https://github.com/cszhangzhen/GraphRTA.