NeurIPS 2024 Papers

Conference on Neural Information Processing Systems

Decision breakdown

4,562papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    721.6%
  • Spotlight
    3828.4%
  • Poster
    4,06489.1%
  • Other / unlabeled
    441.0%

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Instruction Tuning Large Language Models to Understand Electronic Health Records

Zhenbang Wu, Anant Dadu, Michael Nalls, Faraz Faghri, Jimeng Sun

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Large language models (LLMs) have shown impressive capabilities in solving a wide range of tasks based on human instructions. However, developing a conversational AI assistant for electronic health record (EHR) data remains challenging due to (1) the lack of large-scale instruction-following datasets and (2) the limitations of existing model architectures in handling complex and heterogeneous EHR data. In this paper, we introduce MIMIC-Instr, a dataset comprising over 400K open-ended instruction-following examples derived from the MIMIC-IV EHR database. This dataset covers various topics and is suitable for instruction-tuning general-purpose LLMs for diverse clinical use cases. Additionally, we propose Llemr, a general framework that enables LLMs to process and interpret EHRs with complex data structures. Llemr demonstrates competitive performance in answering a wide range of patient-related questions based on EHR data. Furthermore, our evaluations on clinical predictive modeling benchmarks reveal that the fine-tuned Llemr achieves performance comparable to state-of-the-art (SOTA) baselines using curated features. The dataset and code are available at \url{https://github.com/zzachw/llemr}.

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Are Language Models Actually Useful for Time Series Forecasting?

Mingtian Tan, Mike A Merrill, Vinayak Gupta, Tim Althoff, Thomas Hartvigsen

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Large language models (LLMs) are being applied to time series forecasting. But are language models actually useful for time series? In a series of ablation studies on three recent and popular LLM-based time series forecasting methods, we find that removing the LLM component or replacing it with a basic attention layer does not degrade forecasting performance---in most cases, the results even improve! We also find that despite their significant computational cost, pretrained LLMs do no better than models trained from scratch, do not represent the sequential dependencies in time series, and do not assist in few-shot settings. Additionally, we explore time series encoders and find that patching and attention structures perform similarly to LLM-based forecasters. All resources needed to reproduce our work are available: https://github.com/BennyTMT/LLMsForTimeSeries.

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Human-Aware Vision-and-Language Navigation: Bridging Simulation to Reality with Dynamic Human Interactions

Heng Li, Minghan Li, Zhi-Qi Cheng, Yifei Dong, Yuxuan Zhou, Jun-Yan He, Qi Dai, Teruko Mitamura, Alexander G Hauptmann

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Vision-and-Language Navigation (VLN) aims to develop embodied agents that navigate based on human instructions. However, current VLN frameworks often rely on static environments and optimal expert supervision, limiting their real-world applicability. To address this, we introduce Human-Aware Vision-and-Language Navigation (HA-VLN), extending traditional VLN by incorporating dynamic human activities and relaxing key assumptions. We propose the Human-Aware 3D (HA3D) simulator, which combines dynamic human activities with the Matterport3D dataset, and the Human-Aware Room-to-Room (HA-R2R) dataset, extending R2R with human activity descriptions. To tackle HA-VLN challenges, we present the Expert-Supervised Cross-Modal (VLN-CM) and Non-Expert-Supervised Decision Transformer (VLN-DT) agents, utilizing cross-modal fusion and diverse training strategies for effective navigation in dynamic human environments. A comprehensive evaluation, including metrics considering human activities, and systematic analysis of HA-VLN's unique challenges, underscores the need for further research to enhance HA-VLN agents' real-world robustness and adaptability. Ultimately, this work provides benchmarks and insights for future research on embodied AI and Sim2Real transfer, paving the way for more realistic and applicable VLN systems in human-populated environments.

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BioTrove: A Large Curated Image Dataset Enabling AI for Biodiversity

Chih-Hsuan Yang, Benjamin Feuer, Talukder Zaki Jubery, Zi K. Deng, Andre Nakkab, Md Zahid Hasan, Shivani Chiranjeevi, Kelly O. Marshall, Nirmal Baishnab, Asheesh K Singh, ARTI SINGH, Soumik Sarkar, Nirav Merchant, Chinmay Hegde, Baskar Ganapathysubramanian

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We introduce BioTrove, the largest publicly accessible dataset designed to advance AI applications in biodiversity. Curated from the iNaturalist platform and vetted to include only research-grade data, BioTrove contains 161.9 million images, offering unprecedented scale and diversity from three primary kingdoms: Animalia ("animals"), Fungi ("fungi"), and Plantae ("plants"), spanning approximately 366.6K species. Each image is annotated with scientific names, taxonomic hierarchies, and common names, providing rich metadata to support accurate AI model development across diverse species and ecosystems. We demonstrate the value of BioTrove by releasing a suite of CLIP models trained using a subset of 40 million captioned images, known as BioTrove-Train. This subset focuses on seven categories within the dataset that are underrepresented in standard image recognition models, selected for their critical role in biodiversity and agriculture: Aves ("birds"), Arachnida} ("spiders/ticks/mites"), Insecta ("insects"), Plantae ("plants"), Fungi ("fungi"), Mollusca ("snails"), and Reptilia ("snakes/lizards"). To support rigorous assessment, we introduce several new benchmarks and report model accuracy for zero-shot learning across life stages, rare species, confounding species, and multiple taxonomic levels. We anticipate that BioTrove will spur the development of AI models capable of supporting digital tools for pest control, crop monitoring, biodiversity assessment, and environmental conservation. These advancements are crucial for ensuring food security, preserving ecosystems, and mitigating the impacts of climate change. BioTrove is publicly available, easily accessible, and ready for immediate use.

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Variational Delayed Policy Optimization

Qingyuan Wu, Simon Sinong Zhan, Yixuan Wang, Yuhui Wang, Chung-Wei Lin, Chen Lv, Qi Zhu, Chao Huang

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In environments with delayed observation, state augmentation by including actions within the delay window is adopted to retrieve Markovian property to enable reinforcement learning (RL). Whereas, state-of-the-art (SOTA) RL techniques with Temporal-Difference (TD) learning frameworks commonly suffer from learning inefficiency, due to the significant expansion of the augmented state space with the delay. To improve the learning efficiency without sacrificing performance, this work novelly introduces Variational Delayed Policy Optimization (VDPO), reforming delayed RL as a variational inference problem. This problem is further modelled as a two-step iterative optimization problem, where the first step is TD learning in the delay-free environment with a small state space, and the second step is behaviour cloning which can be addressed much more efficiently than TD learning. We not only provide a theoretical analysis of VDPO in terms of sample complexity and performance, but also empirically demonstrate that VDPO can achieve consistent performance with SOTA methods, with a significant enhancement of sample efficiency (approximately 50\% less amount of samples) in the MuJoCo benchmark.

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DeSparsify: Adversarial Attack Against Token Sparsification Mechanisms

Oryan Yehezkel, Alon Zolfi, Amit Baras, Yuval Elovici, Asaf Shabtai

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Vision transformers have shown remarkable advancements in the computer vision domain, demonstrating state-of-the-art performance in diverse tasks (e.g., image classification, object detection). However, their high computational requirements grow quadratically with the number of tokens used. Token sparsification mechanisms have been proposed to address this issue. These mechanisms employ an input-dependent strategy, in which uninformative tokens are discarded from the computation pipeline, improving the model’s efficiency. However, their dynamism and average-case assumption makes them vulnerable to a new threat vector – carefully crafted adversarial examples capable of fooling the sparsification mechanism, resulting in worst-case performance. In this paper, we present DeSparsify, an attack targeting the availability of vision transformers that use token sparsification mechanisms. The attack aims to exhaust the operating system’s resources, while maintaining its stealthiness. Our evaluation demonstrates the attack’s effectiveness on three token sparsification mechanisms and examines the attack’s transferability between them and its effect on the GPU resources. To mitigate the impact of the attack, we propose various countermeasures.

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Reverse Transition Kernel: A Flexible Framework to Accelerate Diffusion Inference

Xunpeng Huang, Difan Zou, Hanze Dong, Yi Zhang, Yian Ma, Tong Zhang

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To generate data from trained diffusion models, most inference algorithms, such as DDPM, DDIM, and other variants, rely on discretizing the reverse SDEs or their equivalent ODEs. In this paper, we view such approaches as decomposing the entire denoising diffusion process into several segments, each corresponding to a reverse transition kernel (RTK) sampling subproblem. Specifically, DDPM uses a Gaussian approximation for the RTK, resulting in low per-subproblem complexity but requiring a large number of segments (i.e., subproblems), which is conjectured to be inefficient. To address this, we develop a general RTK framework that enables a more balanced subproblem decomposition, resulting in $\tilde O(1)$ subproblems, each with strongly log-concave targets. We then propose leveraging two fast sampling algorithms, the Metropolis-Adjusted Langevin Algorithm (MALA) and Underdamped Langevin Dynamics (ULD), for solving these strongly log-concave subproblems. This gives rise to the RTK-MALA and RTK-ULD algorithms for diffusion inference. In theory, we further develop the convergence guarantees for RTK-MALA and RTK-ULD in total variation (TV) distance: RTK-ULD can achieve $\epsilon$ target error within $\tilde{\mathcal O}(d^{1/2}\epsilon^{-1})$ under mild conditions, and RTK-MALA enjoys a $\mathcal{O}(d^{2}\log(d/\epsilon))$ convergence rate under slightly stricter conditions. These theoretical results surpass the state-of-the-art convergence rates for diffusion inference and are well supported by numerical experiments.

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GAIA: Rethinking Action Quality Assessment for AI-Generated Videos

Zijian Chen, Wei Sun, Yuan Tian, Jun Jia, Zicheng Zhang, Wang Jiarui, Ru Huang, Xiongkuo Min, Guangtao Zhai, Wenjun Zhang

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Assessing action quality is both imperative and challenging due to its significant impact on the quality of AI-generated videos, further complicated by the inherently ambiguous nature of actions within AI-generated video (AIGV). Current action quality assessment (AQA) algorithms predominantly focus on actions from real specific scenarios and are pre-trained with normative action features, thus rendering them inapplicable in AIGVs. To address these problems, we construct GAIA, a Generic AI-generated Action dataset, by conducting a large-scale subjective evaluation from a novel causal reasoning-based perspective, resulting in 971,244 ratings among 9,180 video-action pairs. Based on GAIA, we evaluate a suite of popular text-to-video (T2V) models on their ability to generate visually rational actions, revealing their pros and cons on different categories of actions. We also extend GAIA as a testbed to benchmark the AQA capacity of existing automatic evaluation methods. Results show that traditional AQA methods, action-related metrics in recent T2V benchmarks, and mainstream video quality methods perform poorly with an average SRCC of 0.454, 0.191, and 0.519, respectively, indicating a sizable gap between current models and human action perception patterns in AIGVs. Our findings underscore the significance of action quality as a unique perspective for studying AIGVs and can catalyze progress towards methods with enhanced capacities for AQA in AIGVs.

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Semi-supervised Multi-label Learning with Balanced Binary Angular Margin Loss

Ximing Li, Silong Liang, Changchun Li, Pengfei Wang, Fangming Gu

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Semi-supervised multi-label learning (SSMLL) refers to inducing classifiers using a small number of samples with multiple labels and many unlabeled samples. The prevalent solution of SSMLL involves forming pseudo-labels for unlabeled samples and inducing classifiers using both labeled and pseudo-labeled samples in a self-training manner. Unfortunately, with the commonly used binary type of loss and negative sampling, we have empirically found that learning with labeled and pseudo-labeled samples can result in the variance bias problem between the feature distributions of positive and negative samples for each label. To alleviate this problem, we aim to balance the variance bias between positive and negative samples from the perspective of the feature angle distribution for each label. Specifically, we extend the traditional binary angular margin loss to a balanced extension with feature angle distribution transformations under the Gaussian assumption, where the distributions are iteratively updated during classifier training. We also suggest an efficient prototype-based negative sampling method to maintain high-quality negative samples for each label. With this insight, we propose a novel SSMLL method, namely Semi-Supervised Multi-Label Learning with Balanced Binary Angular Margin loss (S$^2$ML$^2$-BBAM). To evaluate the effectiveness of S$^2$ML$^2$-BBAM, we compare it with existing competitors on benchmark datasets. The experimental results validate that S$^2$ML$^2$-BBAM can achieve very competitive performance.

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Auditing Privacy Mechanisms via Label Inference Attacks

Robert Istvan Busa-Fekete, Travis Dick, Claudio Gentile, Andres Munoz medina, Adam Smith, Marika Swanberg

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We propose reconstruction advantage measures to audit label privatization mechanisms. A reconstruction advantage measure quantifies the increase in an attacker's ability to infer the true label of an unlabeled example when provided with a private version of the labels in a dataset (e.g., aggregate of labels from different users or noisy labels output by randomized response), compared to an attacker that only observes the feature vectors, but may have prior knowledge of the correlation between features and labels. We consider two such auditing measures: one additive, and on multiplicative. These cover previous approaches taken in the literature on empirical auditing and differential privacy. These measures allow us to place a variety of proposed privatization schemes---some differentially private, some not---on the same footing. We analyze these measures theoretically under a distributional model which, we claim, encapsulates reasonable adversarial settings. We also quantify their behavior empirically on real and simulated prediction tasks. Across a range of experimental settings, we find that differentially private schemes dominate or match the privacy-utility tradeoff of more heuristic approaches.

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Flexible task abstractions emerge in linear networks with fast and bounded units

Kai Jappe Sandbrink, Jan Philipp Bauer, Alexandra Maria Proca, Andrew M Saxe, Christopher Summerfield, Ali Hummos

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Animals survive in dynamic environments changing at arbitrary timescales, but such data distribution shifts are a challenge to neural networks. To adapt to change, neural systems may change a large number of parameters, which is a slow process involving forgetting past information. In contrast, animals leverage distribution changes to segment their stream of experience into tasks and associate them with internal task abstracts. Animals can then respond flexibly by selecting the appropriate task abstraction. However, how such flexible task abstractions may arise in neural systems remains unknown. Here, we analyze a linear gated network where the weights and gates are jointly optimized via gradient descent, but with neuron-like constraints on the gates including a faster timescale, non-negativity, and bounded activity. We observe that the weights self-organize into modules specialized for tasks or sub-tasks encountered, while the gates layer forms unique representations that switch the appropriate weight modules (task abstractions). We analytically reduce the learning dynamics to an effective eigenspace, revealing a virtuous cycle: fast adapting gates drive weight specialization by protecting previous knowledge, while weight specialization in turn increases the update rate of the gating layer. Task switching in the gating layer accelerates as a function of curriculum block size and task training, mirroring key findings in cognitive neuroscience. We show that the discovered task abstractions support generalization through both task and subtask composition, and we extend our findings to a non-linear network switching between two tasks. Overall, our work offers a theory of cognitive flexibility in animals as arising from joint gradient descent on synaptic and neural gating in a neural network architecture.

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QKFormer: Hierarchical Spiking Transformer using Q-K Attention

Chenlin Zhou, Han Zhang, Zhaokun Zhou, Liutao Yu, Liwei Huang, Xiaopeng Fan, Li Yuan, Zhengyu Ma, Huihui Zhou, Yonghong Tian

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Spiking Transformers, which integrate Spiking Neural Networks (SNNs) with Transformer architectures, have attracted significant attention due to their potential for low energy consumption and high performance. However, there remains a substantial gap in performance between SNNs and Artificial Neural Networks (ANNs). To narrow this gap, we have developed QKFormer, a direct training spiking transformer with the following features: i) _Linear complexity and high energy efficiency_, the novel spike-form Q-K attention module efficiently models the token or channel attention through binary vectors and enables the construction of larger models. ii) _Multi-scale spiking representation_, achieved by a hierarchical structure with the different numbers of tokens across blocks. iii) _Spiking Patch Embedding with Deformed Shortcut (SPEDS)_, enhances spiking information transmission and integration, thus improving overall performance. It is shown that QKFormer achieves significantly superior performance over existing state-of-the-art SNN models on various mainstream datasets. Notably, with comparable size to Spikformer (66.34 M, 74.81\%), QKFormer (64.96 M) achieves a groundbreaking top-1 accuracy of **85.65\%** on ImageNet-1k, substantially outperforming Spikformer by **10.84\%**. To our best knowledge, this is the first time that directly training SNNs have exceeded 85\% accuracy on ImageNet-1K.

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xLSTM: Extended Long Short-Term Memory

Maximilian Beck, Korbinian Pöppel, Markus Spanring, Andreas Auer, Oleksandra Prudnikova, Michael K Kopp, Günter Klambauer, Johannes Brandstetter, Sepp Hochreiter

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In the 1990s, the constant error carousel and gating were introduced as the central ideas of the Long Short-Term Memory (LSTM). Since then, LSTMs have stood the test of time and contributed to numerous deep learning success stories, in particular they constituted the first Large Language Models (LLMs). However, the advent of the Transformer technology with parallelizable self-attention at its core marked the dawn of a new era, outpacing LSTMs at scale. We now raise a simple question: How far do we get in language modeling when scaling LSTMs to billions of parameters, leveraging the latest techniques from modern LLMs, but mitigating known limitations of LSTMs? Firstly, we introduce exponential gating with appropriate normalization and stabilization techniques. Secondly, we modify the LSTM memory structure, obtaining: (i) sLSTM with a scalar memory, a scalar update, and new memory mixing, (ii) mLSTM that is fully parallelizable with a matrix memory and a covariance update rule. Integrating these LSTM extensions into residual block backbones yields xLSTM blocks that are then residually stacked into xLSTM architectures. Exponential gating and modified memory structures boost xLSTM capabilities to perform favorably when compared to state-of-the-art Transformers and State Space Models, both in performance and scaling.

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Buffer of Thoughts: Thought-Augmented Reasoning with Large Language Models

Ling Yang, Zhaochen Yu, Tianjun Zhang, Shiyi Cao, Minkai Xu, Wentao Zhang, Joseph E. Gonzalez, Bin Cui

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We introduce Buffer of Thoughts (BoT), a novel and versatile thought-augmented reasoning approach for enhancing accuracy, efficiency and robustness of large language models (LLMs). Specifically, we propose meta-buffer to store a series of informative high-level thoughts, namely thought-template, distilled from the problem-solving processes across various tasks. Then for each problem, we retrieve a relevant thought-template and adaptively instantiate it with specific reasoning structures to conduct efficient reasoning. To guarantee the scalability and stability, we further propose buffer-manager to dynamically update the meta-buffer, thus enhancing the capacity of meta-buffer as more tasks are solved. We conduct extensive experiments on 10 challenging reasoning-intensive tasks, and achieve significant performance improvements over previous SOTA methods: 11\% on Game of 24, 20\% on Geometric Shapes and 51\% on Checkmate-in-One. Further analysis demonstrate the superior generalization ability and model robustness of our BoT, while requiring only 12\% of the cost of multi-query prompting methods (e.g., tree/graph of thoughts) on average. Code is available at: https://github.com/YangLing0818/buffer-of-thought-llm

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Many-Shot In-Context Learning

Rishabh Agarwal, Avi Singh, Lei M Zhang, Bernd Bohnet, Luis Rosias, Stephanie C.Y. Chan, Biao Zhang, Ankesh Anand, Zaheer Abbas, Azade Nova, John D Co-Reyes, Eric Chu, Feryal Behbahani, Aleksandra Faust, Hugo Larochelle

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Large language models (LLMs) excel at few-shot in-context learning (ICL) -- learning from a few examples provided in context at inference, without any weight updates. Newly expanded context windows allow us to investigate ICL with hundreds or thousands of examples – the many-shot regime. Going from few-shot to many-shot, we observe significant performance gains across a wide variety of generative and discriminative tasks. While promising, many-shot ICL can be bottlenecked by the available amount of human-generated outputs. To mitigate this limitation, we explore two new settings: (1) "Reinforced ICL" that uses model-generated chain-of-thought rationales in place of human rationales, and (2) "Unsupervised ICL" where we remove rationales from the prompt altogether, and prompts the model only with domain-specific inputs. We find that both Reinforced and Unsupervised ICL can be quite effective in the many-shot regime, particularly on complex reasoning tasks. We demonstrate that, unlike few-shot learning, many-shot learning is effective at overriding pretraining biases, can learn high-dimensional functions with numerical inputs, and performs comparably to supervised fine-tuning. Finally, we reveal the limitations of next-token prediction loss as an indicator of downstream ICL performance.

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MassSpecGym: A benchmark for the discovery and identification of molecules

Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, Bo Wang, David Wishart, Liping Liu, Juho Rousu, Wout Bittremieux, Hannes Rost, Tytus D. Mak, Soha Hassoun, Florian Huber, Justin J.J. van der Hooft, Michael A. Stravs, Sebastian Böcker, Josef Sivic, Tomas Pluskal

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The discovery and identification of molecules in biological and environmental samples is crucial for advancing biomedical and chemical sciences. Tandem mass spectrometry (MS/MS) is the leading technique for high-throughput elucidation of molecular structures. However, decoding a molecular structure from its mass spectrum is exceptionally challenging, even when performed by human experts. As a result, the vast majority of acquired MS/MS spectra remain uninterpreted, thereby limiting our understanding of the underlying (bio)chemical processes. Despite decades of progress in machine learning applications for predicting molecular structures from MS/MS spectra, the development of new methods is severely hindered by the lack of standard datasets and evaluation protocols. To address this problem, we propose MassSpecGym -- the first comprehensive benchmark for the discovery and identification of molecules from MS/MS data. Our benchmark comprises the largest publicly available collection of high-quality MS/MS spectra and defines three MS/MS annotation challenges: \textit{de novo} molecular structure generation, molecule retrieval, and spectrum simulation. It includes new evaluation metrics and a generalization-demanding data split, therefore standardizing the MS/MS annotation tasks and rendering the problem accessible to the broad machine learning community. MassSpecGym is publicly available at \url{https://github.com/pluskal-lab/MassSpecGym}.

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DiffLight: A Partial Rewards Conditioned Diffusion Model for Traffic Signal Control with Missing Data

Hanyang Chen, Yang Jiang, Shengnan Guo, Xiaowei Mao, Youfang Lin, Huaiyu Wan

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The application of reinforcement learning in traffic signal control (TSC) has been extensively researched and yielded notable achievements. However, most existing works for TSC assume that traffic data from all surrounding intersections is fully and continuously available through sensors. In real-world applications, this assumption often fails due to sensor malfunctions or data loss, making TSC with missing data a critical challenge. To meet the needs of practical applications, we introduce DiffLight, a novel conditional diffusion model for TSC under data-missing scenarios in the offline setting. Specifically, we integrate two essential sub-tasks, i.e., traffic data imputation and decision-making, by leveraging a Partial Rewards Conditioned Diffusion (PRCD) model to prevent missing rewards from interfering with the learning process. Meanwhile, to effectively capture the spatial-temporal dependencies among intersections, we design a Spatial-Temporal transFormer (STFormer) architecture. In addition, we propose a Diffusion Communication Mechanism (DCM) to promote better communication and control performance under data-missing scenarios. Extensive experiments on five datasets with various data-missing scenarios demonstrate that DiffLight is an effective controller to address TSC with missing data. The code of DiffLight is released at https://github.com/lokol5579/DiffLight-release.

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MultiOOD: Scaling Out-of-Distribution Detection for Multiple Modalities

Hao Dong, Yue Zhao, Eleni Chatzi, Olga Fink

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Detecting out-of-distribution (OOD) samples is important for deploying machine learning models in safety-critical applications such as autonomous driving and robot-assisted surgery. Existing research has mainly focused on unimodal scenarios on image data. However, real-world applications are inherently multimodal, which makes it essential to leverage information from multiple modalities to enhance the efficacy of OOD detection. To establish a foundation for more realistic Multimodal OOD Detection, we introduce the first-of-its-kind benchmark, MultiOOD, characterized by diverse dataset sizes and varying modality combinations. We first evaluate existing unimodal OOD detection algorithms on MultiOOD, observing that the mere inclusion of additional modalities yields substantial improvements. This underscores the importance of utilizing multiple modalities for OOD detection. Based on the observation of Modality Prediction Discrepancy between in-distribution (ID) and OOD data, and its strong correlation with OOD performance, we propose the Agree-to-Disagree (A2D) algorithm to encourage such discrepancy during training. Moreover, we introduce a novel outlier synthesis method, NP-Mix, which explores broader feature spaces by leveraging the information from nearest neighbor classes and complements A2D to strengthen OOD detection performance. Extensive experiments on MultiOOD demonstrate that training with A2D and NP-Mix improves existing OOD detection algorithms by a large margin. To support accessibility and reproducibility, our source code and MultiOOD benchmark are available at https://github.com/donghao51/MultiOOD.

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Disentangling the Roles of Distinct Cell Classes with Cell-Type Dynamical Systems

Aditi Jha, Diksha Gupta, Carlos D Brody, Jonathan W. Pillow

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Latent dynamical systems have been widely used to characterize the dynamics of neural population activity in the brain. However, these models typically ignore the fact that the brain contains multiple cell types. This limits their ability to capture the functional roles of distinct cell classes, and to predict the effects of cell-specific perturbations on neural activity or behavior. To overcome these limitations, we introduce the `"cell-type dynamical systems" (CTDS) model. This model extends latent linear dynamical systems to contain distinct latent variables for each cell class, with biologically inspired constraints on both dynamics and emissions. To illustrate our approach, we consider neural recordings with distinct excitatory (E) and inhibitory (I) populations. The CTDS model defines separate latents for both cell types, and constrains the dynamics so that E (I) latents have a strictly positive (negative) effects on other latents. We applied CTDS to recordings from rat frontal orienting fields (FOF) and anterior dorsal striatum (ADS) during an auditory decision-making task. The model achieved higher accuracy than a standard linear dynamical system (LDS), and revealed that the animal's choice can be decoded from both E and I latents and thus is not restricted to a single cell-class. We also performed in-silico optogenetic perturbation experiments in the FOF and ADS, and found that CTDS was able to replicate the experimentally observed effects of different perturbations on behavior, whereas a standard LDS model---which does not differentiate between cell types---did not. Crucially, our model allowed us to understand the effects of these perturbations by revealing the dynamics of different cell-specific latents. Finally, CTDS can also be used to identify cell types for neurons whose class labels are unknown in electrophysiological recordings. These results illustrate the power of the CTDS model to provide more accurate and more biologically interpretable descriptions of neural population dynamics and their relationship to behavior.

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Context and Geometry Aware Voxel Transformer for Semantic Scene Completion

Zhu Yu, Runmin Zhang, Jiacheng Ying, Junchen Yu, Xiaohai Hu, Lun Luo, Si-Yuan Cao, Hui-liang Shen

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Vision-based Semantic Scene Completion (SSC) has gained much attention due to its widespread applications in various 3D perception tasks. Existing sparse-to-dense approaches typically employ shared context-independent queries across various input images, which fails to capture distinctions among them as the focal regions of different inputs vary and may result in undirected feature aggregation of cross-attention. Additionally, the absence of depth information may lead to points projected onto the image plane sharing the same 2D position or similar sampling points in the feature map, resulting in depth ambiguity. In this paper, we present a novel context and geometry aware voxel transformer. It utilizes a context aware query generator to initialize context-dependent queries tailored to individual input images, effectively capturing their unique characteristics and aggregating information within the region of interest. Furthermore, it extend deformable cross-attention from 2D to 3D pixel space, enabling the differentiation of points with similar image coordinates based on their depth coordinates. Building upon this module, we introduce a neural network named CGFormer to achieve semantic scene completion. Simultaneously, CGFormer leverages multiple 3D representations (i.e., voxel and TPV) to boost the semantic and geometric representation abilities of the transformed 3D volume from both local and global perspectives. Experimental results demonstrate that CGFormer achieves state-of-the-art performance on the SemanticKITTI and SSCBench-KITTI-360 benchmarks, attaining a mIoU of 16.87 and 20.05, as well as an IoU of 45.99 and 48.07, respectively. Remarkably, CGFormer even outperforms approaches employing temporal images as inputs or much larger image backbone networks.

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