Feature Attribution

Functional magnetic resonance imaging (fMRI) is an indispensable tool in modern neuroscience, providing a non-invasive window into whole-brain dynamics at millimeter-scale spatial resolution. However, fMRI is constrained by issues such as high operation costs and immobility. With the rapid advancements in cross-modality synthesis and brain decoding, the use of deep neural networks has emerged as a promising solution for inferring whole-brain, high-resolution fMRI features directly from electroencephalography (EEG), a more widely accessible and portable neuroimaging modality. Nonetheless, the complex projection from neural activity to fMRI hemodynamic responses and the spatial ambiguity of EEG pose substantial challenges both in modeling and interpretability. Relatively few studies to date have developed approaches for EEG-fMRI translation, and although they have made significant strides, the inference of fMRI signals in a given study has been limited to a small set of brain areas and to a single condition (i.e., either resting-state or a specific task). The capability to predict fMRI signals in other brain areas, as well as to generalize across conditions, remain critical gaps in the field. To tackle these challenges, we introduce a novel and generalizable framework: NeuroBOLT, i.e., Neuro-to-BOLD Transformer, which leverages multi-dimensional representation learning from temporal, spatial, and spectral domains to translate raw EEG data to the corresponding fMRI activity signals across the brain. Our experiments demonstrate that NeuroBOLT effectively reconstructs unseen resting-state fMRI signals from primary sensory, high-level cognitive areas, and deep subcortical brain regions, achieving state-of-the-art accuracy with the potential to generalize across varying conditions and sites, which significantly advances the integration of these two modalities.

The past neural network design has largely focused on feature \textit{representation space} dimension and its capacity scaling (e.g., width, depth), but overlooked the feature \textit{interaction space} scaling. Recent advancements have shown shifted focus towards element-wise multiplication to facilitate higher-dimensional feature interaction space for better information transformation. Despite this progress, multiplications predominantly capture low-order interactions, thus remaining confined to a finite-dimensional interaction space. To transcend this limitation, classic kernel methods emerge as a promising solution to engage features in an infinite-dimensional space. We introduce InfiNet, a model architecture that enables feature interaction within an infinite-dimensional space created by RBF kernel. Our experiments reveal that InfiNet achieves new state-of-the-art, owing to its capability to leverage infinite-dimensional interactions, significantly enhancing model performance.

Deep learning succeeds by doing hierarchical feature learning, yet tuning hyper-parameters (HP) such as initialization scales, learning rates etc., only give indirect control over this behavior. In this paper, we introduce a key notion to predict and control feature learning: the angle $\theta_\ell$ between the feature updates and the backward pass (at layer index $\ell$). We show that the magnitude of feature updates after one GD step, at any training time, can be expressed via a simple and general *feature speed formula* in terms of this angle $\theta_\ell$, the loss decay, and the magnitude of the backward pass. This angle $\theta_\ell$ is controlled by the conditioning of the layer-to-layer Jacobians and at random initialization, it is determined by the spectrum of a certain kernel, which coincides with the Neural Tangent Kernel when $\ell=\text{depth}$. Given $\theta_\ell$, the feature speed formula provides us with rules to adjust HPs (scales and learning rates) so as to satisfy certain dynamical properties, such as feature learning and loss decay. We investigate the implications of our approach for ReLU MLPs and ResNets in the large width-then-depth limit. Relying on prior work, we show that in ReLU MLPs with iid initialization, the angle degenerates with depth as $\cos(\theta_\ell)=\Theta(1/\sqrt{\ell})$. In contrast, ResNets with branch scale $O(1/\sqrt{\text{depth}})$ maintain a non-degenerate angle $\cos(\theta_\ell)=\Theta(1)$. We use these insights to recover key properties of known HP scalings (such as $\mu$P), and also introduce a new HP scaling for large depth ReLU MLPs with favorable theoretical properties.

The spurious correlation between the background features of the image and its label arises due to that the samples labeled with the same class in the training set often co-occurs with a specific background, which will cause the encoder to extract non-semantic features for classification, resulting in poor out-of-distribution generalization performance. Although many studies have been proposed to address this challenge, the semantic and spurious features are still difficult to accurately decouple from the original image and fail to achieve high performance with deep learning models. This paper proposes a novel perspective inspired by neural collapse to solve the spurious correlation problem through the alternate execution of environment partitioning and learning semantic masks. Specifically, we propose to assign an environment to each sample by learning a local model for each environment and using maximum likelihood probability. At the same time, we require that the learned semantic mask neurally collapses to the same simplex equiangular tight frame (ETF) in each environment after being applied to the original input. We conduct extensive experiments on four datasets, and the results demonstrate that our method significantly improves out-of-distribution performance.

In Deep Reinforcement Learning (RL), it is a challenge to learn representations that do not exhibit catastrophic forgetting or interference in non-stationary environments. Successor Features (SFs) offer a potential solution to this challenge. However, canonical techniques for learning SFs from pixel-level observations often lead to representation collapse, wherein representations degenerate and fail to capture meaningful variations in the data. More recent methods for learning SFs can avoid representation collapse, but they often involve complex losses and multiple learning phases, reducing their efficiency. We introduce a novel, simple method for learning SFs directly from pixels. Our approach uses a combination of a Temporal-difference (TD) loss and a reward prediction loss, which together capture the basic mathematical definition of SFs. We show that our approach matches or outperforms existing SF learning techniques in both 2D (Minigrid) and 3D (Miniworld) mazes, for both single and continual learning scenarios. As well, our technique is efficient, and can reach higher levels of performance in less time than other approaches. Our work provides a new, streamlined technique for learning SFs directly from pixel observations, with no pretraining required.

How can we attribute the behaviors of machine learning models to their training data? While the classic influence function sheds light on the impact of individual samples, it often fails to capture the more complex and pronounced collective influence of a set of samples. To tackle this challenge, we study the Most Influential Subset Selection (MISS) problem, which aims to identify a subset of training samples with the greatest collective influence. We conduct a comprehensive analysis of the prevailing approaches in MISS, elucidating their strengths and weaknesses. Our findings reveal that influence-based greedy heuristics, a dominant class of algorithms in MISS, can provably fail even in linear regression. We delineate the failure modes, including the errors of influence function and the non-additive structure of the collective influence. Conversely, we demonstrate that an adaptive version of these heuristics which applies them iteratively, can effectively capture the interactions among samples and thus partially address the issues. Experiments on real-world datasets corroborate these theoretical findings, and further demonstrate that the merit of adaptivity can extend to more complex scenarios such as classification tasks and non-linear neural networks. We conclude our analysis by emphasizing the inherent trade-off between performance and computational efficiency, questioning the use of additive metrics such as the linear datamodeling score, and offering a range of discussions.

The classical iteratively reweighted least-squares (IRLS) algorithm aims to recover an unknown signal from linear measurements by performing a sequence of weighted least squares problems, where the weights are recursively updated at each step. Varieties of this algorithm have been shown to achieve favorable empirical performance and theoretical guarantees for sparse recovery and $\ell_p$-norm minimization. Recently, some preliminary connections have also been made between IRLS and certain types of non-convex linear neural network architectures that are observed to exploit low-dimensional structure in high-dimensional linear models. In this work, we provide a unified asymptotic analysis for a family of algorithms that encompasses IRLS, the recently proposed lin-RFM algorithm (which was motivated by feature learning in neural networks), and the alternating minimization algorithm on linear diagonal neural networks. Our analysis operates in a "batched" setting with i.i.d. Gaussian covariates and shows that, with appropriately chosen reweighting policy, the algorithm can achieve favorable performance in only a handful of iterations. We also extend our results to the case of group-sparse recovery and show that leveraging this structure in the reweighting scheme provably improves test error compared to coordinate-wise reweighting.

Feature attributions attempt to highlight what inputs drive predictive power. Good attributions or explanations are thus those that produce inputs that retain this predictive power; accordingly, evaluations of explanations score their quality of prediction. However, evaluations produce scores better than what appears possible from the values in the explanation for a class of explanations, called encoding explanations. Probing for encoding remains a challenge because there is no general characterization of what gives the extra predictive power. We develop a definition of encoding that identifies this extra predictive power via conditional dependence and show that the definition fits existing examples of encoding. This definition implies, in contrast to encoding explanations, that non-encoding explanations contain all the informative inputs used to produce the explanation, giving them a “what you see is what you get” property, which makes them transparent and simple to use. Next, we prove that existing scores (ROAR, FRESH, EVAL-X) do not rank non-encoding explanations above encoding ones, and develop STRIPE-X which ranks them correctly. After empirically demonstrating the theoretical insights, we use STRIPE-X to show that despite prompting an LLM to produce non-encoding explanations for a sentiment analysis task, the LLM-generated explanations encode.

Originally rooted in game theory, the Shapley Value (SV) has recently become an important tool in machine learning research. Perhaps most notably, it is used for feature attribution and data valuation in explainable artificial intelligence. Shapley Interactions (SIs) naturally extend the SV and address its limitations by assigning joint contributions to groups of entities, which enhance understanding of black box machine learning models. Due to the exponential complexity of computing SVs and SIs, various methods have been proposed that exploit structural assumptions or yield probabilistic estimates given limited resources. In this work, we introduce shapiq, an open-source Python package that unifies state-of-the-art algorithms to efficiently compute SVs and any-order SIs in an application-agnostic framework. Moreover, it includes a benchmarking suite containing 11 machine learning applications of SIs with pre-computed games and ground-truth values to systematically assess computational performance across domains. For practitioners, shapiq is able to explain and visualize any-order feature interactions in predictions of models, including vision transformers, language models, as well as XGBoost and LightGBM with TreeSHAP-IQ. With shapiq, we extend shap beyond feature attributions and consolidate the application of SVs and SIs in machine learning that facilitates future research. The source code and documentation are available at https://github.com/mmschlk/shapiq.

The state-of-the-art feature attribution methods often neglect the influence of unobservable confounders, posing a risk of misinterpretation, especially when it is crucial for the interpretation to remain faithful to the data. To counteract this, we propose a new approach, data-faithful feature attribution, which trains a confounder-free model using instrumental variables. The cluttered effects of unobservable confounders in a model trained as such are decoupled from input features, thereby aligning the output of the model with the contribution of input features to the target feature in the data generation. Furthermore, feature attribution results produced by our method are more robust when focusing on attributions from the perspective of data generation. Our experiments on both synthetic and real-world datasets demonstrate the effectiveness of our approaches.

Model-X knockoff has garnered significant attention among various feature selection methods due to its guarantees for controlling the false discovery rate (FDR). Since its introduction in parametric design, knockoff techniques have evolved to handle arbitrary data distributions using deep learning-based generative models. However, we have observed limitations in the current implementations of the deep Model-X knockoff framework. Notably, the "swap property" that knockoffs require often faces challenges at the sample level, resulting in diminished selection power. To address these issues, we develop "Deep Dependency Regularized Knockoff (DeepDRK)," a distribution-free deep learning method that effectively balances FDR and power. In DeepDRK, we introduce a novel formulation of the knockoff model as a learning problem under multi-source adversarial attacks. By employing an innovative perturbation technique, we achieve lower FDR and higher power. Our model outperforms existing benchmarks across synthetic, semi-synthetic, and real-world datasets, particularly when sample sizes are small and data distributions are non-Gaussian.

Perceptual learning refers to the practices through which participants learn to improve their performance in perceiving sensory stimuli. Two seemingly conflicting phenomena of specificity and transfer have been widely observed in perceptual learning. Here, we propose a dual-learning model to reconcile these two phenomena. The model consists of two learning processes. One is task-based learning, which is fast and enables the brain to adapt to a task rapidly by using existing feature representations. The other is feature-based learning, which is slow and enables the brain to improve feature representations to match the statistical change of the environment. Associated with different training paradigms, the interactions between these two learning processes induce the rich phenomena of perceptual learning. Specifically, in the training paradigm where the same stimulus condition is presented excessively, feature-based learning is triggered, which incurs specificity, while in the paradigm where the stimulus condition varies during the training, task-based learning dominates to induce the transfer effect. As the number of training sessions under the same stimulus condition increases, a transition from transfer to specificity occurs. We demonstrate that the dual-learning model can account for both the specificity and transfer phenomena observed in classical psychophysical experiments. We hope that this study gives us insight into understanding how the brain balances the accomplishment of a new task and the consumption of learning effort.

Fact-checking is extensively studied in the context of misinformation and disinformation, addressing objective inaccuracies. However, a softer form of misinformation involves responses that are factually correct but lack certain features such as clarity and relevance. This challenge is prevalent in formal Question-Answer (QA) settings such as press conferences in finance, politics, sports, and other domains, where subjective answers can obscure transparency. Despite this, there is a lack of manually annotated datasets for subjective features across multiple dimensions. To address this gap, we introduce SubjECTive-QA, a human annotated dataset on Earnings Call Transcripts' (ECTs) QA sessions as the answers given by company representatives are often open to subjective interpretations and scrutiny. The dataset includes 49,446 annotations for long-form QA pairs across six features: Assertive, Cautious, Optimistic, Specific, Clear, and Relevant. These features are carefully selected to encompass the key attributes that reflect the tone of the answers provided during QA sessions across different domains. Our findings are that the best-performing Pre-trained Language Model (PLM), RoBERTa-base, has similar weighted F1 scores to Llama-3-70b-Chat on features with lower subjectivity, such as Relevant and Clear, with a mean difference of 2.17% in their weighted F1 scores. The models perform significantly better on features with higher subjectivity, such as Specific and Assertive, with a mean difference of 10.01% in their weighted F1 scores. Furthermore, testing SubjECTive-QA's generalizability using QAs from White House Press Briefings and Gaggles yields an average weighted F1 score of 65.97% using our best models for each feature, demonstrating broader applicability beyond the financial domain. SubjECTive-QA is publicly available under the CC BY 4.0 license.

While the impressive performance of modern neural networks is often attributed to their capacity to efficiently extract task-relevant features from data, the mechanisms underlying this *rich feature learning regime* remain elusive, with much of our theoretical understanding stemming from the opposing *lazy regime*. In this work, we derive exact solutions to a minimal model that transitions between lazy and rich learning, precisely elucidating how unbalanced *layer-specific* initialization variances and learning rates determine the degree of feature learning. Our analysis reveals that they conspire to influence the learning regime through a set of conserved quantities that constrain and modify the geometry of learning trajectories in parameter and function space. We extend our analysis to more complex linear models with multiple neurons, outputs, and layers and to shallow nonlinear networks with piecewise linear activation functions. In linear networks, rapid feature learning only occurs from balanced initializations, where all layers learn at similar speeds. While in nonlinear networks, unbalanced initializations that promote faster learning in earlier layers can accelerate rich learning. Through a series of experiments, we provide evidence that this unbalanced rich regime drives feature learning in deep finite-width networks, promotes interpretability of early layers in CNNs, reduces the sample complexity of learning hierarchical data, and decreases the time to grokking in modular arithmetic. Our theory motivates further exploration of unbalanced initializations to enhance efficient feature learning.

Credit attribution is crucial across various fields. In academic research, proper citation acknowledges prior work and establishes original contributions. Similarly, in generative models, such as those trained on existing artworks or music, it is important to ensure that any generated content influenced by these works appropriately credits the original creators. We study credit attribution by machine learning algorithms. We propose new definitions--relaxations of Differential Privacy--that weaken the stability guarantees for a designated subset of $k$ datapoints. These $k$ datapoints can be used non-stably with permission from their owners, potentially in exchange for compensation. Meanwhile, the remaining datapoints are guaranteed to have no significant influence on the algorithm's output. Our framework extends well-studied notions of stability, including Differential Privacy ($k = 0$), differentially private learning with public data (where the $k$ public datapoints are fixed in advance), and stable sample compression (where the $k$ datapoints are selected adaptively by the algorithm). We examine the expressive power of these stability notions within the PAC learning framework, provide a comprehensive characterization of learnability for algorithms adhering to these principles, and propose directions and questions for future research.

The explainability of deep neural networks (DNNs) is critical for trust and reliability in AI systems. Path-based attribution methods, such as integrated gradients (IG), aim to explain predictions by accumulating gradients along a path from a baseline to the target image. However, noise accumulated during this process can significantly distort the explanation. While existing methods primarily concentrate on finding alternative paths to circumvent noise, they overlook a critical issue: intermediate-step images frequently diverge from the distribution of training data, further intensifying the impact of noise. This work presents a novel Denoising Diffusion Path (DDPath) to tackle this challenge by harnessing the power of diffusionmodels for denoising. By exploiting the inherent ability of diffusion models to progressively remove noise from an image, DDPath constructs a piece-wise linear path. Each segment of this path ensures that samples drawn from a Gaussian distribution are centered around the target image. This approach facilitates a gradual reduction of noise along the path. We further demonstrate that DDPath adheres to essential axiomatic properties for attribution methods and can be seamlessly integrated with existing methods such as IG. Extensive experimental results demonstrate that DDPath can significantly reduce noise in the attributions—resulting in clearer explanations—and achieves better quantitative results than traditional path-based methods.

Group theory has been used in machine learning to provide a theoretically grounded approach for incorporating known symmetry transformations in tasks from robotics to protein modeling. In these applications, equivariant neural networks use known symmetry groups with predefined representations to learn over geometric input data. We propose MatrixNet, a neural network architecture that learns matrix representations of group element inputs instead of using predefined representations. MatrixNet achieves higher sample efficiency and generalization over several standard baselines in prediction tasks over the several finite groups and the Artin braid group. We also show that MatrixNet respects group relations allowing generalization to group elements of greater word length than in the training set. Our code is available at https://github.com/lucas-laird/MatrixNet.

This paper studies the scaling behavior of state-space models (SSMs) and their structured variants, such as Mamba, that have recently arisen in popularity as alternatives to transformer-based neural network architectures. Specifically, we focus on the capability of SSMs to learn features as their network width approaches infinity. Our findings reveal that established scaling rules, such as the Maximal Update Parameterization, fail to support feature learning as these models cannot be represented in the form of Tensor Programs. Additionally, we demonstrate that spectral scaling conditions, shown to be effective for feature learning in a host of other architectures, do not hold the same implications for SSMs. Through a detailed signal propagation analysis in SSMs, both forward and backward, we identify the appropriate scaling necessary for non-trivial feature evolution in the infinite-width limit. Our proposed scaling shows behavior akin to the Maximal Update Parameterization, such as improved stability, better generalization, and transferability of optimal hyper-parameters from small to large scale SSMs.

Many tasks in explainable machine learning, such as data valuation and feature attribution, perform expensive computation for each data point and are intractable for large datasets. These methods require efficient approximations, and although amortizing the process by learning a network to directly predict the desired output is a promising solution, training such models with exact labels is often infeasible. We therefore explore training amortized models with noisy labels, and we find that this is inexpensive and surprisingly effective. Through theoretical analysis of the label noise and experiments with various models and datasets, we show that this approach tolerates high noise levels and significantly accelerates several feature attribution and data valuation methods, often yielding an order of magnitude speedup over existing approaches.

The advent of Federated Learning (FL) highlights the practical necessity for the ’right to be forgotten’ for all clients, allowing them to request data deletion from the machine learning model’s service provider. This necessity has spurred a growing demand for Federated Unlearning (FU). Feature unlearning has gained considerable attention due to its applications in unlearning sensitive, backdoor, and biased features. Existing methods employ the influence function to achieve feature unlearning, which is impractical for FL as it necessitates the participation of other clients, if not all, in the unlearning process. Furthermore, current research lacks an evaluation of the effectiveness of feature unlearning. To address these limitations, we define feature sensitivity in evaluating feature unlearning according to Lipschitz continuity. This metric characterizes the model output’s rate of change or sensitivity to perturbations in the input feature. We then propose an effective federated feature unlearning framework called Ferrari, which minimizes feature sensitivity. Extensive experimental results and theoretical analysis demonstrate the effectiveness of Ferrari across various feature unlearning scenarios, including sensitive, backdoor, and biased features. The code is publicly available at https://github.com/OngWinKent/Federated-Feature-Unlearning