NeurIPS 2023 Papers

Transferable graph learning involves knowledge transferability from a source graph to a relevant target graph. The major challenge of transferable graph learning is the distribution shift between source and target graphs induced by individual node attributes and complex graph structures. To solve this problem, in this paper, we propose a generic graph-structured Gaussian process framework (GraphGP) for adaptively transferring knowledge across graphs with either homophily or heterophily assumptions. Specifically, GraphGP is derived from a novel graph structure-aware neural network in the limit on the layer width. The generalization analysis of GraphGP explicitly investigates the connection between knowledge transferability and graph domain similarity. Extensive experiments on several transferable graph learning benchmarks demonstrate the efficacy of GraphGP over state-of-the-art Gaussian process baselines.

Bayesian Neural Networks (BNNs) provide a probabilistic interpretation for deep learning models by imposing a prior distribution over model parameters and inferring a posterior distribution based on observed data. The model sampled from the posterior distribution can be used for providing ensemble predictions and quantifying prediction uncertainty. It is well-known that deep learning models with lower sharpness have better generalization ability. However, existing posterior inferences are not aware of sharpness/flatness in terms of formulation, possibly leading to high sharpness for the models sampled from them. In this paper, we develop theories, the Bayesian setting, and the variational inference approach for the sharpness-aware posterior. Specifically, the models sampled from our sharpness-aware posterior, and the optimal approximate posterior estimating this sharpness-aware posterior, have better flatness, hence possibly possessing higher generalization ability. We conduct experiments by leveraging the sharpness-aware posterior with state-of-the-art Bayesian Neural Networks, showing that the flat-seeking counterparts outperform their baselines in all metrics of interest.

Modern Deep Neural Network (DNN) frameworks use tensor operators as the main building blocks of DNNs. However, we observe that operator-based construction of DNNs incurs significant drawbacks in parallelism in the form of synchronization barriers. Synchronization barriers of operators confine the scope of parallel computation to each operator and obscure the rich parallel computation opportunities that exist across operators. To this end, we present ASPEN, a novel parallel computation solution for DNNs that achieves fine-grained dynamic execution of DNNs, which (1) removes the operator barriers and expresses DNNs in dataflow graphs of fine-grained tiles to expose the parallel computation opportunities across operators, and (2) exploits these opportunities by dynamically locating and scheduling them in runtime. This novel approach of ASPEN enables opportunistic parallelism, a new class of parallelism for DNNs that is unavailable in the existing operator-based approaches. ASPEN also achieves high resource utilization and memory reuse by letting each resource asynchronously traverse depthwise in the DNN graph to its full computing potential. We provide challenges and solutions to our approach and show that our proof-of-concept implementation of ASPEN on CPU shows exceptional performance, outperforming state-of-the-art inference systems of TorchScript and TVM by up to 3.2$\times$ and 4.3$\times$, respectively.

Although link prediction on graphs has achieved great success with the development of graph neural networks (GNNs), the potential robustness under the edge noise is still less investigated. To close this gap, we first conduct an empirical study to disclose that the edge noise bilaterally perturbs both input topology and target label, yielding severe performance degradation and representation collapse. To address this dilemma, we propose an information-theory-guided principle, Robust Graph Information Bottleneck (RGIB), to extract reliable supervision signals and avoid representation collapse. Different from the basic information bottleneck, RGIB further decouples and balances the mutual dependence among graph topology, target labels, and representation, building new learning objectives for robust representation against the bilateral noise. Two instantiations, RGIB-SSL and RGIB-REP, are explored to leverage the merits of different methodologies, i.e., self-supervised learning and data reparameterization, for implicit and explicit data denoising, respectively. Extensive experiments on six datasets and three GNNs with diverse noisy scenarios verify the effectiveness of our RGIB instantiations. The code is publicly available at: https://github.com/tmlr-group/RGIB.

Contextual decision-making problems have witnessed extensive applications in various fields such as online content recommendation, personalized healthcare, and autonomous vehicles, where a core practical challenge is to select a suitable surrogate model for capturing unknown complicated reward functions. It is often the case that both high approximation accuracy and explicit uncertainty quantification are desired. In this work, we propose a neural network-accompanied Gaussian process (NN-AGP) model, which leverages neural networks to approximate the unknown and potentially complicated reward function regarding the contextual variable, and maintains a Gaussian process surrogate model with respect to the decision variable. Our model is shown to outperform existing approaches by offering better approximation accuracy thanks to the use of neural networks and possessing explicit uncertainty quantification from the Gaussian process. We also analyze the maximum information gain of the NN-AGP model and prove regret bounds for the corresponding algorithms. Moreover, we conduct experiments on both synthetic and practical problems, illustrating the effectiveness of our approach.

Goal-conditioned policies are generally understood to be "feed-forward" circuits, in the form of neural networks that map from the current state and the goal specification to the next action to take. However, under what circumstances such a policy can be learned and how efficient the policy will be are not well understood. In this paper, we present a circuit complexity analysis for relational neural networks (such as graph neural networks and transformers) representing policies for planning problems, by drawing connections with serialized goal regression search (S-GRS). We show that there are three general classes of planning problems, in terms of the growth of circuit width and depth as a function of the number of objects and planning horizon, providing constructive proofs. We also illustrate the utility of this analysis for designing neural networks for policy learning.

This work studies the evaluation of explaining graph neural networks (GNNs), which is crucial to the credibility of post-hoc explainability in practical usage. Conventional evaluation metrics, and even explanation methods -- which mainly follow the paradigm of feeding the explanatory subgraph and measuring output difference -- always suffer from the notorious out-of-distribution (OOD) issue. In this work, we endeavor to confront the issue by introducing a novel evaluation metric, termed **O**OD-resistant **A**dversarial **R**obustness (OAR). Specifically, we draw inspiration from the notion of adversarial robustness and evaluate post-hoc explanation subgraphs by calculating their robustness under attack. On top of that, an elaborate OOD reweighting block is inserted into the pipeline to confine the evaluation process to the original data distribution. For applications involving large datasets, we further devise a **Sim**plified version of **OAR** (SimOAR), which achieves a significant improvement in computational efficiency at the cost of a small amount of performance. Extensive empirical studies validate the effectiveness of our OAR and SimOAR.

One of the grand challenges of cell biology is inferring the gene regulatory network (GRN) which describes interactions between genes and their products that control gene expression and cellular function. We can treat this as a causal discovery problem but with two non-standard challenges: (1) regulatory networks are inherently cyclic so we should not model a GRN as a directed acyclic graph (DAG), and (2) observations have significant measurement noise so for typical sample sizes, there will always be a large equivalence class of graphs that are likely given the data, and we want methods that capture this uncertainty. Existing methods either focus on challenge (1), identifying cyclic structure from dynamics, or on challenge (2) learning complex Bayesian posteriors over directed acyclic graphs, but not both. In this paper we leverage the fact that it is possible to estimate the ``velocity'' of the expression of a gene with RNA velocity techniques to develop an approach that addresses both challenges. Because we have access to velocity information, we can treat the Bayesian structure learning problem as a problem of sparse identification of a dynamical system, capturing cyclic feedback loops through time. We leverage Generative Flow Networks (GFlowNets) to estimate the posterior distribution over the combinatorial space of possible sparse dependencies. Our results indicate that our method learns posteriors that better encapsulate the distributions of cyclic structures compared to counterpart state-of-the-art Bayesian structure learning approaches.

In various engineering and applied science applications, repetitive numerical simulations of partial differential equations (PDEs) for varying input parameters are often required (e.g., aircraft shape optimization over many design parameters) and solvers are required to perform rapid execution. In this study, we suggest a path that potentially opens up a possibility for physics-informed neural networks (PINNs), emerging deep-learning-based solvers, to be considered as one such solver. Although PINNs have pioneered a proper integration of deep-learning and scientific computing, they require repetitive time-consuming training of neural networks, which is not suitable for many-query scenarios. To address this issue, we propose a lightweight low-rank PINNs containing only hundreds of model parameters and an associated hypernetwork-based meta-learning algorithm, which allows efficient approximation of solutions of PDEs for varying ranges of PDE input parameters. Moreover, we show that the proposed method is effective in overcoming a challenging issue, known as "failure modes" of PINNs.

We propose Deep Patch Visual Odometry (DPVO), a new deep learning system for monocular Visual Odometry (VO). DPVO uses a novel recurrent network architecture designed for tracking image patches across time. Recent approaches to VO have significantly improved the state-of-the-art accuracy by using deep networks to predict dense flow between video frames. However, using dense flow incurs a large computational cost, making these previous methods impractical for many use cases. Despite this, it has been assumed that dense flow is important as it provides additional redundancy against incorrect matches. DPVO disproves this assumption, showing that it is possible to get the best accuracy and efficiency by exploiting the advantages of sparse patch-based matching over dense flow. DPVO introduces a novel recurrent update operator for patch based correspondence coupled with differentiable bundle adjustment. On Standard benchmarks, DPVO outperforms all prior work, including the learning-based state-of-the-art VO-system (DROID) using a third of the memory while running 3x faster on average. Code is available at https://github.com/princeton-vl/DPVO

Inferring causal structure from data is a challenging task of fundamental importance in science. Often, observational data alone is not enough to uniquely identify a system’s causal structure. The use of interventional data can address this issue, however, acquiring these samples typically demands a considerable investment of time and physical or financial resources. In this work, we are concerned with the acquisition of interventional data in a targeted manner to minimize the number of required experiments. We propose a novel Gradient-based Intervention Targeting method, abbreviated GIT, that ’trusts’ the gradient estimator of a gradient-based causal discovery framework to provide signals for the intervention targeting function. We provide extensive experiments in simulated and real-world datasets and demonstrate that GIT performs on par with competitive baselines, surpassing them in the low-data regime.

Understanding the learning process of artificial neural networks requires clarifying the structure of the parameter space within which learning takes place. A neural network parameter's functional equivalence class is the set of parameters implementing the same input--output function. For many architectures, almost all parameters have a simple and well-documented functional equivalence class. However, there is also a vanishing minority of reducible parameters, with richer functional equivalence classes caused by redundancies among the network's units. In this paper, we give an algorithmic characterisation of unit redundancies and reducible functional equivalence classes for a single-hidden-layer hyperbolic tangent architecture. We show that such functional equivalence classes are piecewise-linear path-connected sets, and that for parameters with a majority of redundant units, the sets have a diameter of at most 7 linear segments.

Graph Neural Networks (GNNs) have proven to be highly effective in solving real-world learning problems that involve graph-structured data. However, GNNs can also inadvertently expose sensitive user information and interactions through their model predictions. To address these privacy concerns, Differential Privacy (DP) protocols are employed to control the trade-off between provable privacy protection and model utility. Applying standard DP approaches to GNNs directly is not advisable due to two main reasons. First, the prediction of node labels, which relies on neighboring node attributes through graph convolutions, can lead to privacy leakage. Second, in practical applications, the privacy requirements for node attributes and graph topology may differ. In the latter setting, existing DP-GNN models fail to provide multigranular trade-offs between graph topology privacy, node attribute privacy, and GNN utility. To address both limitations, we propose a new framework termed Graph Differential Privacy (GDP), specifically tailored to graph learning. GDP ensures both provably private model parameters as well as private predictions. Additionally, we describe a novel unified notion of graph dataset adjacency to analyze the properties of GDP for different levels of graph topology privacy. Our findings reveal that DP-GNNs, which rely on graph convolutions, not only fail to meet the requirements for multigranular graph topology privacy but also necessitate the injection of DP noise that scales at least linearly with the maximum node degree. In contrast, our proposed Differentially Private Decoupled Graph Convolutions (DPDGCs) represent a more flexible and efficient alternative to graph convolutions that still provides the necessary guarantees of GDP. To validate our approach, we conducted extensive experiments on seven node classification benchmarking and illustrative synthetic datasets. The results demonstrate that DPDGCs significantly outperform existing DP-GNNs in terms of privacy-utility trade-offs.

Probabilistic inference in high-dimensional state-space models is computationally challenging. For many spatiotemporal systems, however, prior knowledge about the dependency structure of state variables is available. We leverage this structure to develop a computationally efficient approach to state estimation and learning in graph-structured state-space models with (partially) unknown dynamics and limited historical data. Building on recent methods that combine ideas from deep learning with principled inference in Gaussian Markov random fields (GMRF), we reformulate graph-structured state-space models as Deep GMRFs defined by simple spatial and temporal graph layers. This results in a flexible spatiotemporal prior that can be learned efficiently from a single time sequence via variational inference. Under linear Gaussian assumptions, we retain a closed-form posterior, which can be sampled efficiently using the conjugate gradient method, scaling favourably compared to classical Kalman filter based approaches.

Intelligence relies on an agent's knowledge of what it does not know. This capability can be assessed based on the quality of joint predictions of labels across multiple inputs. In principle, ensemble-based approaches can produce effective joint predictions, but the computational costs of large ensembles become prohibitive. We introduce the epinet: an architecture that can supplement any conventional neural network, including large pretrained models, and can be trained with modest incremental computation to estimate uncertainty. With an epinet, conventional neural networks outperform very large ensembles, consisting of hundreds or more particles, with orders of magnitude less computation. The epinet does not fit the traditional framework of Bayesian neural networks. To accommodate development of approaches beyond BNNs, such as the epinet, we introduce the epistemic neural network (ENN) as a general interface for models that produce joint predictions.

Given a training set, a loss function, and a neural network architecture, it is often taken for granted that optimal network parameters exist, and a common practice is to apply available optimization algorithms to search for them. In this work, we show that the existence of an optimal solution is not always guaranteed, especially in the context of sparse ReLU neural networks. In particular, we first show that optimization problems involving deep networks with certain sparsity patterns do not always have optimal parameters, and that optimization algorithms may then diverge. Via a new topological relation between sparse ReLU neural networks and their linear counterparts, we derive --using existing tools from real algebraic geometry-- an algorithm to verify that a given sparsity pattern suffers from this issue. Then, the existence of a global optimum is proved for every concrete optimization problem involving a shallow sparse ReLU neural network of output dimension one. Overall, the analysis is based on the investigation of two topological properties of the space of functions implementable as sparse ReLU neural networks: a best approximation property, and a closedness property, both in the uniform norm. This is studied both for (finite) domains corresponding to practical training on finite training sets, and for more general domains such as the unit cube. This allows us to provide conditions for the guaranteed existence of an optimum given a sparsity pattern. The results apply not only to several sparsity patterns proposed in recent works on network pruning/sparsification, but also to classical dense neural networks, including architectures not covered by existing results.

Normal estimation for 3D point clouds is a fundamental task in 3D geometry processing. The state-of-the-art methods rely on priors of fitting local surfaces learned from normal supervision. However, normal supervision in benchmarks comes from synthetic shapes and is usually not available from real scans, thereby limiting the learned priors of these methods. In addition, normal orientation consistency across shapes remains difficult to achieve without a separate post-processing procedure. To resolve these issues, we propose a novel method for estimating oriented normals directly from point clouds without using ground truth normals as supervision. We achieve this by introducing a new paradigm for learning neural gradient functions, which encourages the neural network to fit the input point clouds and yield unit-norm gradients at the points. Specifically, we introduce loss functions to facilitate query points to iteratively reach the moving targets and aggregate onto the approximated surface, thereby learning a global surface representation of the data. Meanwhile, we incorporate gradients into the surface approximation to measure the minimum signed deviation of queries, resulting in a consistent gradient field associated with the surface. These techniques lead to our deep unsupervised oriented normal estimator that is robust to noise, outliers and density variations. Our excellent results on widely used benchmarks demonstrate that our method can learn more accurate normals for both unoriented and oriented normal estimation tasks than the latest methods. The source code and pre-trained model are publicly available.

This paper presents a collaborative implicit neural simultaneous localization and mapping (SLAM) system with RGB-D image sequences, which consists of complete front-end and back-end modules including odometry, loop detection, sub-map fusion, and global refinement. In order to enable all these modules in a unified framework, we propose a novel neural point based 3D scene representation in which each point maintains a learnable neural feature for scene encoding and is associated with a certain keyframe. Moreover, a distributed-to-centralized learning strategy is proposed for the collaborative implicit SLAM to improve consistency and cooperation. A novel global optimization framework is also proposed to improve the system accuracy like traditional bundle adjustment. Experiments on various datasets demonstrate the superiority of the proposed method in both camera tracking and mapping.

Physics-informed neural networks (PINNs) have recently emerged as promising data-driven PDE solvers showing encouraging results on various PDEs. However, there is a fundamental limitation of training PINNs to solve multi-dimensional PDEs and approximate very complex solution functions. The number of training points (collocation points) required on these challenging PDEs grows substantially, and it is severely limited due to the expensive computational costs and heavy memory overhead. To overcome this limit, we propose a network architecture and training algorithm for PINNs. The proposed method, separable PINN (SPINN), operates on a per-axis basis to decrease the number of network propagations in multi-dimensional PDEs instead of point-wise processing in conventional PINNs. We also propose using forward-mode automatic differentiation to reduce the computational cost of computing PDE residuals, enabling a large number of collocation points ($>10^7$) on a single commodity GPU. The experimental results show significantly reduced computational costs ($62\times$ in wall-clock time, $1,394\times$ in FLOPs given the same number of collocation points) in multi-dimensional PDEs while achieving better accuracy. Furthermore, we present that SPINN can solve a chaotic (2+1)-d Navier-Stokes equation much faster than the best-performing prior method (9 minutes vs. 10 hours in a single GPU), maintaining accuracy. Finally, we showcase that SPINN can accurately obtain the solution of a highly nonlinear and multi-dimensional PDE, a (3+1)-d Navier-Stokes equation. For visualized results and code, please see https://jwcho5576.github.io/spinn.github.io/.