NeurIPS 2023 Papers

Conference on Neural Information Processing Systems

Decision breakdown

3,584papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    772.1%
  • Spotlight
    40011.2%
  • Poster
    3,10786.7%

Browse all papers

Topic: Deep learning · generative models and autoencoders · 776 papers · Reset filters

Equivariant Flow Matching with Hybrid Probability Transport for 3D Molecule Generation

Yuxuan Song, Jingjing Gong, Minkai Xu, Ziyao Cao, Yanyan Lan, Stefano Ermon, Hao Zhou, Wei-Ying Ma

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The generation of 3D molecules requires simultaneously deciding the categorical features (atom types) and continuous features (atom coordinates). Deep generative models, especially Diffusion Models (DMs), have demonstrated effectiveness in generating feature-rich geometries. However, existing DMs typically suffer from unstable probability dynamics with inefficient sampling speed. In this paper, we introduce geometric flow matching, which enjoys the advantages of both equivariant modeling and stabilized probability dynamics. More specifically, we propose a hybrid probability path where the coordinates probability path is regularized by an equivariant optimal transport, and the information between different modalities is aligned. Experimentally, the proposed method could consistently achieve better performance on multiple molecule generation benchmarks with 4.75$\times$ speed up of sampling on average.

Poster
A Finite-Sample Analysis of Payoff-Based Independent Learning in Zero-Sum Stochastic Games

Zaiwei Chen, Kaiqing Zhang, Eric Mazumdar, Asuman E. Ozdaglar, Adam Wierman

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In this work, we study two-player zero-sum stochastic games and develop a variant of the smoothed best-response learning dynamics that combines independent learning dynamics for matrix games with the minimax value iteration for stochastic games. The resulting learning dynamics are payoff-based, convergent, rational, and symmetric between the two players. Our theoretical results present to the best of our knowledge the first last-iterate finite-sample analysis of such independent learning dynamics. To establish the results, we develop a coupled Lyapunov drift approach to capture the evolution of multiple sets of coupled and stochastic iterates, which might be of independent interest.

Poster
Learning Modulated Transformation in GANs

Ceyuan Yang, Qihang Zhang, Yinghao Xu, Jiapeng Zhu, Yujun Shen, Bo Dai

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The success of style-based generators largely benefits from style modulation, which helps take care of the cross-instance variation within data. However, the instance-wise stochasticity is typically introduced via regular convolution, where kernels interact with features at some fixed locations, limiting its capacity for modeling geometric variation. To alleviate this problem, we equip the generator in generative adversarial networks (GANs) with a plug-and-play module, termed as modulated transformation module (MTM). This module predicts spatial offsets under the control of latent codes, based on which the convolution operation can be applied at variable locations for different instances, and hence offers the model an additional degree of freedom to handle geometry deformation. Extensive experiments suggest that our approach can be faithfully generalized to various generative tasks, including image generation, 3D-aware image synthesis, and video generation, and get compatible with state-of-the-art frameworks without any hyper-parameter tuning. It is noteworthy that, towards human generation on the challenging TaiChi dataset, we improve the FID of StyleGAN3 from 21.36 to 13.60, demonstrating the efficacy of learning modulated geometry transformation. Code and models are available at https://github.com/limbo0000/mtm.

Poster
Towards robust and generalizable representations of extracellular data using contrastive learning

Ankit Vishnubhotla, Charlotte Loh, Akash Srivastava, Liam Paninski, Cole Lincoln Hurwitz

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Contrastive learning is quickly becoming an essential tool in neuroscience for extracting robust and meaningful representations of neural activity. Despite numerous applications to neuronal population data, there has been little exploration of how these methods can be adapted to key primary data analysis tasks such as spike sorting or cell-type classification. In this work, we propose a novel contrastive learning framework, CEED (Contrastive Embeddings for Extracellular Data), for high-density extracellular recordings. We demonstrate that through careful design of the network architecture and data augmentations, it is possible to generically extract representations that far outperform current specialized approaches. We validate our method across multiple high-density extracellular recordings. All code used to run CEED can be found at https://github.com/ankitvishnu23/CEED.

Poster
Use perturbations when learning from explanations

Juyeon Heo, Vihari Piratla, Matthew Robert Wicker, Adrian Weller

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Machine learning from explanations (MLX) is an approach to learning that uses human-provided explanations of relevant or irrelevant features for each input to ensure that model predictions are right for the right reasons. Existing MLX approaches rely on local model interpretation methods and require strong model smoothing to align model and human explanations, leading to sub-optimal performance. We recast MLX as a robustness problem, where human explanations specify a lower dimensional manifold from which perturbations can be drawn, and show both theoretically and empirically how this approach alleviates the need for strong model smoothing. We consider various approaches to achieving robustness, leading to improved performance over prior MLX methods. Finally, we show how to combine robustness with an earlier MLX method, yielding state-of-the-art results on both synthetic and real-world benchmarks.

Poster
Diffusion with Forward Models: Solving Stochastic Inverse Problems Without Direct Supervision

Ayush Tewari, Tianwei Yin, George Cazenavette, Semon Rezchikov, Joshua B. Tenenbaum, Fredo Durand, William T. Freeman, Vincent Sitzmann

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Denoising diffusion models are a powerful type of generative models used to capture complex distributions of real-world signals. However, their applicability is limited to scenarios where training samples are readily available, which is not always the case in real-world applications. For example, in inverse graphics, the goal is to generate samples from a distribution of 3D scenes that align with a given image, but ground-truth 3D scenes are unavailable and only 2D images are accessible. To address this limitation, we propose a novel class of denoising diffusion probabilistic models that learn to sample from distributions of signals that are never directly observed. Instead, these signals are measured indirectly through a known differentiable forward model, which produces partial observations of the unknown signal. Our approach involves integrating the forward model directly into the denoising process. A key contribution of our work is the integration of a differentiable forward model into the denoising process. This integration effectively connects the generative modeling of observations with the generative modeling of the underlying signals, allowing for end-to-end training of a conditional generative model over signals. During inference, our approach enables sampling from the distribution of underlying signals that are consistent with a given partial observation. We demonstrate the effectiveness of our method on three challenging computer vision tasks. For instance, in the context of inverse graphics, our model enables direct sampling from the distribution of 3D scenes that align with a single 2D input image.

Spotlight
Contrastive Retrospection: honing in on critical steps for rapid learning and generalization in RL

Chen Sun, Wannan Yang, Thomas Jiralerspong, Dane Malenfant, Benjamin Alsbury-Nealy, Yoshua Bengio, Blake Aaron Richards

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In real life, success is often contingent upon multiple critical steps that are distant in time from each other and from the final reward. These critical steps are challenging to identify with traditional reinforcement learning (RL) methods that rely on the Bellman equation for credit assignment. Here, we present a new RL algorithm that uses offline contrastive learning to hone in on these critical steps. This algorithm, which we call Contrastive Retrospection (ConSpec), can be added to any existing RL algorithm. ConSpec learns a set of prototypes for the critical steps in a task by a novel contrastive loss and delivers an intrinsic reward when the current state matches one of the prototypes. The prototypes in ConSpec provide two key benefits for credit assignment: (i) They enable rapid identification of all the critical steps. (ii) They do so in a readily interpretable manner, enabling out-of-distribution generalization when sensory features are altered. Distinct from other contemporary RL approaches to credit assignment, ConSpec takes advantage of the fact that it is easier to retrospectively identify the small set of steps that success is contingent upon (and ignoring other states) than it is to prospectively predict reward at every taken step. ConSpec greatly improves learning in a diverse set of RL tasks. The code is available at the link: https://github.com/sunchipsster1/ConSpec

Poster
Coop: Memory is not a Commodity

Jianhao Zhang, Shihan Ma, Peihong Liu, Jinhui Yuan

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Tensor rematerialization allows the training of deep neural networks (DNNs) under limited memory budgets by checkpointing the models and recomputing the evicted tensors as needed. However, the existing tensor rematerialization techniques overlook the memory system in deep learning frameworks and implicitly assume that free memory blocks at different addresses are identical. Under this flawed assumption, discontiguous tensors are evicted, among which some are not used to allocate the new tensor. This leads to severe memory fragmentation and increases the cost of potential rematerializations. To address this issue, we propose to evict tensors within a sliding window to ensure all evictions are contiguous and are immediately used. Furthermore, we proposed cheap tensor partitioning and recomputable in-place to further reduce the rematerialization cost by optimizing the tensor allocation. We named our method Coop as it is a co-optimization of tensor allocation and tensor rematerialization. We evaluated Coop on eight representative DNNs. The experimental results demonstrate that Coop achieves up to $2\times$ memory saving and hugely reduces compute overhead, search latency, and memory fragmentation compared to the state-of-the-art baselines.

Spotlight
Scaling Laws for Hyperparameter Optimization

Arlind Kadra, Maciej Janowski, Martin Wistuba, Josif Grabocka

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Hyperparameter optimization is an important subfield of machine learning that focuses on tuning the hyperparameters of a chosen algorithm to achieve peak performance. Recently, there has been a stream of methods that tackle the issue of hyperparameter optimization, however, most of the methods do not exploit the dominant power law nature of learning curves for Bayesian optimization. In this work, we propose Deep Power Laws (DPL), an ensemble of neural network models conditioned to yield predictions that follow a power-law scaling pattern. Our method dynamically decides which configurations to pause and train incrementally by making use of gray-box evaluations. We compare our method against 7 state-of-the-art competitors on 3 benchmarks related to tabular, image, and NLP datasets covering 59 diverse tasks. Our method achieves the best results across all benchmarks by obtaining the best any-time results compared to all competitors.

Poster
Learning to Configure Separators in Branch-and-Cut

Sirui Li, Wenbin Ouyang, Max B. Paulus, Cathy Wu

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Cutting planes are crucial in solving mixed integer linear programs (MILP) as they facilitate bound improvements on the optimal solution. Modern MILP solvers rely on a variety of separators to generate a diverse set of cutting planes by invoking the separators frequently during the solving process. This work identifies that MILP solvers can be drastically accelerated by appropriately selecting separators to activate. As the combinatorial separator selection space imposes challenges for machine learning, we *learn to separate* by proposing a novel data-driven strategy to restrict the selection space and a learning-guided algorithm on the restricted space. Our method predicts instance-aware separator configurations which can dynamically adapt during the solve, effectively accelerating the open source MILP solver SCIP by improving the relative solve time up to 72% and 37% on synthetic and real-world MILP benchmarks. Our work complements recent work on learning to select cutting planes and highlights the importance of separator management.

Poster
xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data

Jing Gong, Minsheng Hao, Xingyi Cheng, Xin Zeng, Chiming Liu, Jianzhu Ma, Xuegong Zhang, Taifeng Wang, Le Song

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Advances in high-throughput sequencing technology have led to significant progress in measuring gene expressions at the single-cell level. The amount of publicly available single-cell RNA-seq (scRNA-seq) data is already surpassing 50M records for humans with each record measuring 20,000 genes. This highlights the need for unsupervised representation learning to fully ingest these data, yet classical transformer architectures are prohibitive to train on such data in terms of both computation and memory. To address this challenge, we propose a novel asymmetric encoder-decoder transformer for scRNA-seq data, called xTrimoGene$^\alpha$ (or xTrimoGene for short), which leverages the sparse characteristic of the data to scale up the pre-training. This scalable design of xTrimoGene reduces FLOPs by one to two orders of magnitude compared to classical transformers while maintaining high accuracy, enabling us to train the largest transformer models over the largest scRNA-seq dataset today. Our experiments also show that the performance of xTrimoGene improves as we scale up the model sizes, and it also leads to SOTA performance over various downstream tasks, such as cell type annotation, perturb-seq effect prediction, and drug combination prediction. xTrimoGene model is now available for use as a service via the following link: https://api.biomap.com/xTrimoGene/apply.

Poster
Object-Centric Slot Diffusion

Jindong Jiang, Fei Deng, Gautam Singh, Sungjin Ahn

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The recent success of transformer-based image generative models in object-centric learning highlights the importance of powerful image generators for handling complex scenes. However, despite the high expressiveness of diffusion models in image generation, their integration into object-centric learning remains largely unexplored in this domain. In this paper, we explore the feasibility and potential of integrating diffusion models into object-centric learning and investigate the pros and cons of this approach. We introduce Latent Slot Diffusion (LSD), a novel model that serves dual purposes: it is the first object-centric learning model to replace conventional slot decoders with a latent diffusion model conditioned on object slots, and it is also the first unsupervised compositional conditional diffusion model that operates without the need for supervised annotations like text. Through experiments on various object-centric tasks, including the first application of the FFHQ dataset in this field, we demonstrate that LSD significantly outperforms state-of-the-art transformer-based decoders, particularly in more complex scenes, and exhibits superior unsupervised compositional generation quality. In addition, we conduct a preliminary investigation into the integration of pre-trained diffusion models in LSD and demonstrate its effectiveness in real-world image segmentation and generation. Project page is available at https://latentslotdiffusion.github.io

Spotlight
Semi-Implicit Denoising Diffusion Models (SIDDMs)

yanwu xu, Mingming Gong, Shaoan Xie, Wei Wei, Matthias Grundmann, Kayhan Batmanghelich, Tingbo Hou

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Despite the proliferation of generative models, achieving fast sampling during inference without compromising sample diversity and quality remains challenging. Existing models such as Denoising Diffusion Probabilistic Models (DDPM) deliver high-quality, diverse samples but are slowed by an inherently high number of iterative steps. The Denoising Diffusion Generative Adversarial Networks (DDGAN) attempted to circumvent this limitation by integrating a GAN model for larger jumps in the diffusion process. However, DDGAN encountered scalability limitations when applied to large datasets. To address these limitations, we introduce a novel approach that tackles the problem by matching implicit and explicit factors. More specifically, our approach involves utilizing an implicit model to match the marginal distributions of noisy data and the explicit conditional distribution of the forward diffusion. This combination allows us to effectively match the joint denoising distributions. Unlike DDPM but similar to DDGAN, we do not enforce a parametric distribution for the reverse step, enabling us to take large steps during inference. Similar to the DDPM but unlike DDGAN, we take advantage of the exact form of the diffusion process. We demonstrate that our proposed method obtains comparable generative performance to diffusion-based models and vastly superior results to models with a small number of sampling steps.

Poster
Diffusion-TTA: Test-time Adaptation of Discriminative Models via Generative Feedback

Mihir Prabhudesai, Tsung-Wei Ke, Alexander Cong Li, Deepak Pathak, Katerina Fragkiadaki

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The advancements in generative modeling, particularly the advent of diffusion models, have sparked a fundamental question: how can these models be effectively used for discriminative tasks? In this work, we find that generative models can be great test-time adapters for discriminative models. Our method, Diffusion-TTA, adapts pre-trained discriminative models such as image classifiers, segmenters and depth predictors, to each unlabelled example in the test set using generative feedback from a diffusion model. We achieve this by modulating the conditioning of the diffusion model using the output of the discriminative model. We then maximize the image likelihood objective by backpropagating the gradients to discriminative model’s parameters. We show Diffusion-TTA significantly enhances the accuracy of various large-scale pre-trained discriminative models, such as, ImageNet classifiers, CLIP models, image pixel labellers and image depth predictors. Diffusion-TTA outperforms existing test-time adaptation methods, including TTT-MAE and TENT, and particularly shines in online adaptation setups, where the discriminative model is continually adapted to each example in the test set. We provide access to code, results, and visualizations on our website: diffusion-tta.github.io/

Poster
Rethinking Conditional Diffusion Sampling with Progressive Guidance

Anh-Dung Dinh, Daochang Liu, Chang Xu

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This paper tackles two critical challenges encountered in classifier guidance for diffusion generative models, i.e., the lack of diversity and the presence of adversarial effects. These issues often result in a scarcity of diverse samples or the generation of non-robust features. The underlying cause lies in the mechanism of classifier guidance, where discriminative gradients push samples to be recognized as conditions aggressively. This inadvertently suppresses information with common features among relevant classes, resulting in a limited pool of features with less diversity or the absence of robust features for image construction. We propose a generalized classifier guidance method called Progressive Guidance, which mitigates the problems by allowing relevant classes' gradients to contribute to shared information construction when the image is noisy in early sampling steps. In the later sampling stage, we progressively enhance gradients to refine the details in the image toward the primary condition. This helps to attain a high level of diversity and robustness compared to the vanilla classifier guidance. Experimental results demonstrate that our proposed method further improves the image quality while offering a significant level of diversity as well as robust features.

Poster
AdaVAE: Bayesian Structural Adaptation for Variational Autoencoders

Paribesh Regmi, Rui Li

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The neural network structures of generative models and their corresponding inference models paired in variational autoencoders (VAEs) play a critical role in the models' generative performance. However, powerful VAE network structures are hand-crafted and fixed prior to training, resulting in a one-size-fits-all approach that requires heavy computation to tune for given data. Moreover, existing VAE regularization methods largely overlook the importance of network structures and fail to prevent overfitting in deep VAE models with cascades of hidden layers. To address these issues, we propose a Bayesian inference framework that automatically adapts VAE network structures to data and prevent overfitting as they grow deeper. We model the number of hidden layers with a beta process to infer the most plausible encoding/decoding network depths warranted by data and perform layer-wise dropout regularization with a conjugate Bernoulli process. We develop a scalable estimator that performs joint inference on both VAE network structures and latent variables. Our experiments show that the inference framework effectively prevents overfitting in both shallow and deep VAE models, yielding state-of-the-art performance. We demonstrate that our framework is compatible with different types of VAE backbone networks and can be applied to various VAE variants, further improving their performance.

Poster
Labeling Neural Representations with Inverse Recognition

Kirill Bykov, Laura Kopf, Shinichi Nakajima, Marius Kloft, Marina MC Höhne

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Deep Neural Networks (DNNs) demonstrate remarkable capabilities in learning complex hierarchical data representations, but the nature of these representations remains largely unknown. Existing global explainability methods, such as Network Dissection, face limitations such as reliance on segmentation masks, lack of statistical significance testing, and high computational demands. We propose Inverse Recognition (INVERT), a scalable approach for connecting learned representations with human-understandable concepts by leveraging their capacity to discriminate between these concepts. In contrast to prior work, INVERT is capable of handling diverse types of neurons, exhibits less computational complexity, and does not rely on the availability of segmentation masks. Moreover, INVERT provides an interpretable metric assessing the alignment between the representation and its corresponding explanation and delivering a measure of statistical significance. We demonstrate the applicability of INVERT in various scenarios, including the identification of representations affected by spurious correlations, and the interpretation of the hierarchical structure of decision-making within the models.

Poster
Generalizing Nonlinear ICA Beyond Structural Sparsity

Yujia Zheng, Kun Zhang

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Nonlinear independent component analysis (ICA) aims to uncover the true latent sources from their observable nonlinear mixtures. Despite its significance, the identifiability of nonlinear ICA is known to be impossible without additional assumptions. Recent advances have proposed conditions on the connective structure from sources to observed variables, known as Structural Sparsity, to achieve identifiability in an unsupervised manner. However, the sparsity constraint may not hold universally for all sources in practice. Furthermore, the assumptions of bijectivity of the mixing process and independence among all sources, which arise from the setting of ICA, may also be violated in many real-world scenarios. To address these limitations and generalize nonlinear ICA, we propose a set of new identifiability results in the general settings of undercompleteness, partial sparsity and source dependence, and flexible grouping structures. Specifically, we prove identifiability when there are more observed variables than sources (undercomplete), and when certain sparsity and/or source independence assumptions are not met for some changing sources. Moreover, we show that even in cases with flexible grouping structures (e.g., part of the sources can be divided into irreducible independent groups with various sizes), appropriate identifiability results can also be established. Theoretical claims are supported empirically on both synthetic and real-world datasets.

Oral
Theoretical and Practical Perspectives on what Influence Functions Do

Andrea Schioppa, Katja Filippova, Ivan Titov, Polina Zablotskaia

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Influence functions (IF) have been seen as a technique for explaining model predictions through the lens of the training data. Their utility is assumed to be in identifying training examples "responsible" for a prediction so that, for example, correcting a prediction is possible by intervening on those examples (removing or editing them) and retraining the model. However, recent empirical studies have shown that the existing methods of estimating IF predict the leave-one-out-and-retrain effect poorly. In order to understand the mismatch between the theoretical promise and the practical results, we analyse five assumptions made by IF methods which are problematic for modern-scale deep neural networks and which concern convexity, numeric stability, training trajectory and parameter divergence. This allows us to clarify what can be expected theoretically from IF. We show that while most assumptions can be addressed successfully, the parameter divergence poses a clear limitation on the predictive power of IF: influence fades over training time even with deterministic training. We illustrate this theoretical result with BERT and ResNet models. Another conclusion from the theoretical analysis is that IF are still useful for model debugging and correcting even though some of the assumptions made in prior work do not hold: using natural language processing and computer vision tasks, we verify that mis-predictions can be successfully corrected by taking only a few fine-tuning steps on influential examples.

Spotlight
Inverse Preference Learning: Preference-based RL without a Reward Function

Joey Hejna, Dorsa Sadigh

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Reward functions are difficult to design and often hard to align with human intent. Preference-based Reinforcement Learning (RL) algorithms address these problems by learning reward functions from human feedback. However, the majority of preference-based RL methods na\"ively combine supervised reward models with off-the-shelf RL algorithms. Contemporary approaches have sought to improve performance and query complexity by using larger and more complex reward architectures such as transformers. Instead of using highly complex architectures, we develop a new and parameter-efficient algorithm, Inverse Preference Learning (IPL), specifically designed for learning from offline preference data. Our key insight is that for a fixed policy, the $Q$-function encodes all information about the reward function, effectively making them interchangeable. Using this insight, we completely eliminate the need for a learned reward function. Our resulting algorithm is simpler and more parameter-efficient. Across a suite of continuous control and robotics benchmarks, IPL attains competitive performance compared to more complex approaches that leverage transformer-based and non-Markovian reward functions while having fewer algorithmic hyperparameters and learned network parameters. Our code is publicly released.

Poster