NeurIPS 2017 Papers

Conference on Neural Information Processing Systems

Decision breakdown

688papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    395.7%
  • Spotlight
    11116.1%
  • Poster
    53878.2%

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Protein Interface Prediction using Graph Convolutional Networks

Alex Fout, Jonathon Byrd, Basir Shariat, Asa Ben-Hur

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We consider the prediction of interfaces between proteins, a challenging problem with important applications in drug discovery and design, and examine the performance of existing and newly proposed spatial graph convolution operators for this task. By performing convolution over a local neighborhood of a node of interest, we are able to stack multiple layers of convolution and learn effective latent representations that integrate information across the graph that represent the three dimensional structure of a protein of interest. An architecture that combines the learned features across pairs of proteins is then used to classify pairs of amino acid residues as part of an interface or not. In our experiments, several graph convolution operators yielded accuracy that is better than the state-of-the-art SVM method in this task.

Poster
Probabilistic Rule Realization and Selection

Haizi Yu, Tianxi Li, Lav R. Varshney

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Abstraction and realization are bilateral processes that are key in deriving intelligence and creativity. In many domains, the two processes are approached through \emph{rules}: high-level principles that reveal invariances within similar yet diverse examples. Under a probabilistic setting for discrete input spaces, we focus on the rule realization problem which generates input sample distributions that follow the given rules. More ambitiously, we go beyond a mechanical realization that takes whatever is given, but instead ask for proactively selecting reasonable rules to realize. This goal is demanding in practice, since the initial rule set may not always be consistent and thus intelligent compromises are needed. We formulate both rule realization and selection as two strongly connected components within a single and symmetric bi-convex problem, and derive an efficient algorithm that works at large scale. Taking music compositional rules as the main example throughout the paper, we demonstrate our model's efficiency in not only music realization (composition) but also music interpretation and understanding (analysis).

Poster
Probabilistic Models for Integration Error in the Assessment of Functional Cardiac Models

Chris Oates, Steven Niederer, Angela Lee, Francois-Xavier Briol, Mark Girolami

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This paper studies the numerical computation of integrals, representing estimates or predictions, over the output $f(x)$ of a computational model with respect to a distribution $p(\mathrm{d}x)$ over uncertain inputs $x$ to the model. For the functional cardiac models that motivate this work, neither $f$ nor $p$ possess a closed-form expression and evaluation of either requires $\approx$ 100 CPU hours, precluding standard numerical integration methods. Our proposal is to treat integration as an estimation problem, with a joint model for both the a priori unknown function $f$ and the a priori unknown distribution $p$. The result is a posterior distribution over the integral that explicitly accounts for dual sources of numerical approximation error due to a severely limited computational budget. This construction is applied to account, in a statistically principled manner, for the impact of numerical errors that (at present) are confounding factors in functional cardiac model assessment.

Poster
Principles of Riemannian Geometry in Neural Networks

Michael Hauser, Asok Ray

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This study deals with neural networks in the sense of geometric transformations acting on the coordinate representation of the underlying data manifold which the data is sampled from. It forms part of an attempt to construct a formalized general theory of neural networks in the setting of Riemannian geometry. From this perspective, the following theoretical results are developed and proven for feedforward networks. First it is shown that residual neural networks are finite difference approximations to dynamical systems of first order differential equations, as opposed to ordinary networks that are static. This implies that the network is learning systems of differential equations governing the coordinate transformations that represent the data. Second it is shown that a closed form solution of the metric tensor on the underlying data manifold can be found by backpropagating the coordinate representations learned by the neural network itself. This is formulated in a formal abstract sense as a sequence of Lie group actions on the metric fibre space in the principal and associated bundles on the data manifold. Toy experiments were run to confirm parts of the proposed theory, as well as to provide intuitions as to how neural networks operate on data.

Poster
Preventing Gradient Explosions in Gated Recurrent Units

Sekitoshi Kanai, Yasuhiro Fujiwara, Sotetsu Iwamura

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A gated recurrent unit (GRU) is a successful recurrent neural network architecture for time-series data. The GRU is typically trained using a gradient-based method, which is subject to the exploding gradient problem in which the gradient increases significantly. This problem is caused by an abrupt change in the dynamics of the GRU due to a small variation in the parameters. In this paper, we find a condition under which the dynamics of the GRU changes drastically and propose a learning method to address the exploding gradient problem. Our method constrains the dynamics of the GRU so that it does not drastically change. We evaluated our method in experiments on language modeling and polyphonic music modeling. Our experiments showed that our method can prevent the exploding gradient problem and improve modeling accuracy.

Poster
Predictive-State Decoders: Encoding the Future into Recurrent Networks

Arun Venkatraman, Nicholas Rhinehart, Wen Sun, Lerrel Pinto, Martial Hebert, Byron Boots, Kris Kitani, J. Bagnell

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Recurrent neural networks (RNNs) are a vital modeling technique that rely on internal states learned indirectly by optimization of a supervised, unsupervised, or reinforcement training loss. RNNs are used to model dynamic processes that are characterized by underlying latent states whose form is often unknown, precluding its analytic representation inside an RNN. In the Predictive-State Representation (PSR) literature, latent state processes are modeled by an internal state representation that directly models the distribution of future observations, and most recent work in this area has relied on explicitly representing and targeting sufficient statistics of this probability distribution. We seek to combine the advantages of RNNs and PSRs by augmenting existing state-of-the-art recurrent neural networks with Predictive-State Decoders (PSDs), which add supervision to the network's internal state representation to target predicting future observations. PSDs are simple to implement and easily incorporated into existing training pipelines via additional loss regularization. We demonstrate the effectiveness of PSDs with experimental results in three different domains: probabilistic filtering, Imitation Learning, and Reinforcement Learning. In each, our method improves statistical performance of state-of-the-art recurrent baselines and does so with fewer iterations and less data.

Poster
Predictive State Recurrent Neural Networks

Carlton Downey, Ahmed Hefny, Byron Boots, Geoffrey J. Gordon, Boyue Li

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We present a new model, Predictive State Recurrent Neural Networks (PSRNNs), for filtering and prediction in dynamical systems. PSRNNs draw on insights from both Recurrent Neural Networks (RNNs) and Predictive State Representations (PSRs), and inherit advantages from both types of models. Like many successful RNN architectures, PSRNNs use (potentially deeply composed) bilinear transfer functions to combine information from multiple sources. We show that such bilinear functions arise naturally from state updates in Bayes filters like PSRs, in which observations can be viewed as gating belief states. We also show that PSRNNs can be learned effectively by combining Backpropogation Through Time (BPTT) with an initialization derived from a statistically consistent learning algorithm for PSRs called two-stage regression (2SR). Finally, we show that PSRNNs can be factorized using tensor decomposition, reducing model size and suggesting interesting connections to existing multiplicative architectures such as LSTMs and GRUs. We apply PSRNNs to 4 datasets, and show that we outperform several popular alternative approaches to modeling dynamical systems in all cases.

Poster
Predicting User Activity Level In Point Processes With Mass Transport Equation

Yichen Wang, Xiaojing Ye, Hongyuan Zha, Le Song

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Point processes are powerful tools to model user activities and have a plethora of applications in social sciences. Predicting user activities based on point processes is a central problem. However, existing works are mostly problem specific, use heuristics, or simplify the stochastic nature of point processes. In this paper, we propose a framework that provides an unbiased estimator of the probability mass function of point processes. In particular, we design a key reformulation of the prediction problem, and further derive a differential-difference equation to compute a conditional probability mass function. Our framework is applicable to general point processes and prediction tasks, and achieves superb predictive and efficiency performance in diverse real-world applications compared to state-of-arts.

Poster
Predicting Scene Parsing and Motion Dynamics in the Future

Xiaojie Jin, Huaxin Xiao, Xiaohui Shen, Jimei Yang, Zhe Lin, Yunpeng Chen, ZEQUN JIE, Jiashi FENG, Shuicheng YAN

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It is important for intelligent systems, e.g. autonomous vehicles and robotics to anticipate the future in order to plan early and make decisions accordingly. Predicting the future scene parsing and motion dynamics helps the agents better understand the visual environment better as the former provides dense semantic segmentations, i.e. what objects will be present and where they will appear, while the latter provides dense motion information, i.e. how the objects move in the future. In this paper, we propose a novel model to predict the scene parsing and motion dynamics in unobserved future video frames simultaneously. Using history information (preceding frames and corresponding scene parsing results) as input, our model is able to predict the scene parsing and motion for arbitrary time steps ahead. More importantly, our model is superior compared to other methods that predict parsing and motion separately, as the complementary relationship between the two tasks are fully utilized in our model through joint learning. To our best knowledge, this is the first attempt in jointly predicting scene parsing and motion dynamics in the future frames. On the large-scale Cityscapes dataset, it is demonstrated that our model produces significantly better parsing and motion prediction results compared to well established baselines. In addition, we also show our model can be used to predict the steering angle of the vehicles, which further verifies the ability of our model to learn underlying latent parameters.

Poster
Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Network

Wengong Jin, Connor Coley, Regina Barzilay, Tommi Jaakkola

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The prediction of organic reaction outcomes is a fundamental problem in computational chemistry. Since a reaction may involve hundreds of atoms, fully exploring the space of possible transformations is intractable. The current solution utilizes reaction templates to limit the space, but it suffers from coverage and efficiency issues. In this paper, we propose a template-free approach to efficiently explore the space of product molecules by first pinpointing the reaction center -- the set of nodes and edges where graph edits occur. Since only a small number of atoms contribute to reaction center, we can directly enumerate candidate products. The generated candidates are scored by a Weisfeiler-Lehman Difference Network that models high-order interactions between changes occurring at nodes across the molecule. Our framework outperforms the top-performing template-based approach with a 10% margin, while running orders of magnitude faster. Finally, we demonstrate that the model accuracy rivals the performance of domain experts.

Poster
PredRNN: Recurrent Neural Networks for Predictive Learning using Spatiotemporal LSTMs

Yunbo Wang, Mingsheng Long, Jianmin Wang, Zhifeng Gao, Philip S. Yu

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The predictive learning of spatiotemporal sequences aims to generate future images by learning from the historical frames, where spatial appearances and temporal variations are two crucial structures. This paper models these structures by presenting a predictive recurrent neural network (PredRNN). This architecture is enlightened by the idea that spatiotemporal predictive learning should memorize both spatial appearances and temporal variations in a unified memory pool. Concretely, memory states are no longer constrained inside each LSTM unit. Instead, they are allowed to zigzag in two directions: across stacked RNN layers vertically and through all RNN states horizontally. The core of this network is a new Spatiotemporal LSTM (ST-LSTM) unit that extracts and memorizes spatial and temporal representations simultaneously. PredRNN achieves the state-of-the-art prediction performance on three video prediction datasets and is a more general framework, that can be easily extended to other predictive learning tasks by integrating with other architectures.

Poster
Practical Locally Private Heavy Hitters

Raef Bassily, Kobbi Nissim, Uri Stemmer, Abhradeep Guha Thakurta

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We present new practical local differentially private heavy hitters algorithms achieving optimal or near-optimal worst-case error -- TreeHist and Bitstogram. In both algorithms, server running time is $\tilde O(n)$ and user running time is $\tilde O(1)$, hence improving on the prior state-of-the-art result of Bassily and Smith [STOC 2015] requiring $\tilde O(n^{5/2})$ server time and $\tilde O(n^{3/2})$ user time. With a typically large number of participants in local algorithms ($n$ in the millions), this reduction in time complexity, in particular at the user side, is crucial for the use of such algorithms in practice. We implemented Algorithm TreeHist to verify our theoretical analysis and compared its performance with the performance of Google's RAPPOR code.

Poster
Practical Hash Functions for Similarity Estimation and Dimensionality Reduction

Søren Dahlgaard, Mathias Knudsen, Mikkel Thorup

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Hashing is a basic tool for dimensionality reduction employed in several aspects of machine learning. However, the perfomance analysis is often carried out under the abstract assumption that a truly random unit cost hash function is used, without concern for which concrete hash function is employed. The concrete hash function may work fine on sufficiently random input. The question is if it can be trusted in the real world when faced with more structured input. In this paper we focus on two prominent applications of hashing, namely similarity estimation with the one permutation hashing (OPH) scheme of Li et al. [NIPS'12] and feature hashing (FH) of Weinberger et al. [ICML'09], both of which have found numerous applications, i.e. in approximate near-neighbour search with LSH and large-scale classification with SVM. We consider the recent mixed tabulation hash function of Dahlgaard et al. [FOCS'15] which was proved theoretically to perform like a truly random hash function in many applications, including the above OPH. Here we first show improved concentration bounds for FH with truly random hashing and then argue that mixed tabulation performs similar when the input vectors are sparse. Our main contribution, however, is an experimental comparison of different hashing schemes when used inside FH, OPH, and LSH. We find that mixed tabulation hashing is almost as fast as the classic multiply-mod-prime scheme ax+b mod p. Mutiply-mod-prime is guaranteed to work well on sufficiently random data, but we demonstrate that in the above applications, it can lead to bias and poor concentration on both real-world and synthetic data. We also compare with the very popular MurmurHash3, which has no proven guarantees. Mixed tabulation and MurmurHash3 both perform similar to truly random hashing in our experiments. However, mixed tabulation was 40% faster than MurmurHash3, and it has the proven guarantee of good performance on all possible input making it more reliable.

Poster
Practical Data-Dependent Metric Compression with Provable Guarantees

Piotr Indyk, Ilya Razenshteyn, Tal Wagner

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We introduce a new distance-preserving compact representation of multi-dimensional point-sets. Given n points in a d-dimensional space where each coordinate is represented using B bits (i.e., dB bits per point), it produces a representation of size O( d log(d B/epsilon) +log n) bits per point from which one can approximate the distances up to a factor of 1 + epsilon. Our algorithm almost matches the recent bound of Indyk et al, 2017} while being much simpler. We compare our algorithm to Product Quantization (PQ) (Jegou et al, 2011) a state of the art heuristic metric compression method. We evaluate both algorithms on several data sets: SIFT, MNIST, New York City taxi time series and a synthetic one-dimensional data set embedded in a high-dimensional space. Our algorithm produces representations that are comparable to or better than those produced by PQ, while having provable guarantees on its performance.

Poster
Practical Bayesian Optimization for Model Fitting with Bayesian Adaptive Direct Search

Luigi Acerbi, Wei Ji Ma

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Computational models in fields such as computational neuroscience are often evaluated via stochastic simulation or numerical approximation. Fitting these models implies a difficult optimization problem over complex, possibly noisy parameter landscapes. Bayesian optimization (BO) has been successfully applied to solving expensive black-box problems in engineering and machine learning. Here we explore whether BO can be applied as a general tool for model fitting. First, we present a novel hybrid BO algorithm, Bayesian adaptive direct search (BADS), that achieves competitive performance with an affordable computational overhead for the running time of typical models. We then perform an extensive benchmark of BADS vs. many common and state-of-the-art nonconvex, derivative-free optimizers, on a set of model-fitting problems with real data and models from six studies in behavioral, cognitive, and computational neuroscience. With default settings, BADS consistently finds comparable or better solutions than other methods, including `vanilla' BO, showing great promise for advanced BO techniques, and BADS in particular, as a general model-fitting tool.

Poster
Position-based Multiple-play Bandit Problem with Unknown Position Bias

Junpei Komiyama, Junya Honda, Akiko Takeda

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Motivated by online advertising, we study a multiple-play multi-armed bandit problem with position bias that involves several slots and the latter slots yield fewer rewards. We characterize the hardness of the problem by deriving an asymptotic regret bound. We propose the Permutation Minimum Empirical Divergence (PMED) algorithm and derive its asymptotically optimal regret bound. Because of the uncertainty of the position bias, the optimal algorithm for such a problem requires non-convex optimizations that are different from usual partial monitoring and semi-bandit problems. We propose a cutting-plane method and related bi-convex relaxation for these optimizations by using auxiliary variables.

Poster
Pose Guided Person Image Generation

Liqian Ma, Xu Jia, Qianru Sun, Bernt Schiele, Tinne Tuytelaars, Luc Van Gool

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This paper proposes the novel Pose Guided Person Generation Network (PG$^2$) that allows to synthesize person images in arbitrary poses, based on an image of that person and a novel pose. Our generation framework PG$^2$ utilizes the pose information explicitly and consists of two key stages: pose integration and image refinement. In the first stage the condition image and the target pose are fed into a U-Net-like network to generate an initial but coarse image of the person with the target pose. The second stage then refines the initial and blurry result by training a U-Net-like generator in an adversarial way. Extensive experimental results on both 128$\times$64 re-identification images and 256$\times$256 fashion photos show that our model generates high-quality person images with convincing details.

Poster
Population Matching Discrepancy and Applications in Deep Learning

Jianfei Chen, Chongxuan Li, Yizhong Ru, Jun Zhu

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A differentiable estimation of the distance between two distributions based on samples is important for many deep learning tasks. One such estimation is maximum mean discrepancy (MMD). However, MMD suffers from its sensitive kernel bandwidth hyper-parameter, weak gradients, and large mini-batch size when used as a training objective. In this paper, we propose population matching discrepancy (PMD) for estimating the distribution distance based on samples, as well as an algorithm to learn the parameters of the distributions using PMD as an objective. PMD is defined as the minimum weight matching of sample populations from each distribution, and we prove that PMD is a strongly consistent estimator of the first Wasserstein metric. We apply PMD to two deep learning tasks, domain adaptation and generative modeling. Empirical results demonstrate that PMD overcomes the aforementioned drawbacks of MMD, and outperforms MMD on both tasks in terms of the performance as well as the convergence speed.

Poster
Polynomial time algorithms for dual volume sampling

Chengtao Li, Stefanie Jegelka, Suvrit Sra

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We study dual volume sampling, a method for selecting k columns from an n*m short and wide matrix (n <= k <= m) such that the probability of selection is proportional to the volume spanned by the rows of the induced submatrix. This method was proposed by Avron and Boutsidis (2013), who showed it to be a promising method for column subset selection and its multiple applications. However, its wider adoption has been hampered by the lack of polynomial time sampling algorithms. We remove this hindrance by developing an exact (randomized) polynomial time sampling algorithm as well as its derandomization. Thereafter, we study dual volume sampling via the theory of real stable polynomials and prove that its distribution satisfies the “Strong Rayleigh” property. This result has numerous consequences, including a provably fast-mixing Markov chain sampler that makes dual volume sampling much more attractive to practitioners. This sampler is closely related to classical algorithms for popular experimental design methods that are to date lacking theoretical analysis but are known to empirically work well.

Poster
Polynomial Codes: an Optimal Design for High-Dimensional Coded Matrix Multiplication

Qian Yu, Mohammad Maddah-Ali, Salman Avestimehr

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We consider a large-scale matrix multiplication problem where the computation is carried out using a distributed system with a master node and multiple worker nodes, where each worker can store parts of the input matrices. We propose a computation strategy that leverages ideas from coding theory to design intermediate computations at the worker nodes, in order to optimally deal with straggling workers. The proposed strategy, named as \emph{polynomial codes}, achieves the optimum recovery threshold, defined as the minimum number of workers that the master needs to wait for in order to compute the output. This is the first code that achieves the optimal utilization of redundancy for tolerating stragglers or failures in distributed matrix multiplication. Furthermore, by leveraging the algebraic structure of polynomial codes, we can map the reconstruction problem of the final output to a polynomial interpolation problem, which can be solved efficiently. Polynomial codes provide order-wise improvement over the state of the art in terms of recovery threshold, and are also optimal in terms of several other metrics including computation latency and communication load. Moreover, we extend this code to distributed convolution and show its order-wise optimality.

Poster