ICML 2025 Papers

International Conference on Machine Learning

Decision breakdown

3,342papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    1213.6%
  • Spotlight
    2256.7%
  • Poster
    2,99689.6%

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Rethink GraphODE Generalization within Coupled Dynamical System

G. W., Zijie Huang, Wanjia Zhao, Xiao Luo, Yizhou Sun, Wei Wang

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Coupled dynamical systems govern essential phenomena across physics, biology, and engineering, where components interact through complex dependencies. While Graph Ordinary Differential Equations (GraphODE) offer a powerful framework to model these systems, their **generalization** capabilities degrade severely under limited observational training data due to two fundamental flaws: (i) the entanglement of static attributes and dynamic states in the initialization process, and (ii) the reliance on context-specific coupling patterns during training, which hinders performance in unseen scenarios. In this paper, we propose a Generalizable GraphODE with disentanglement and regularization (GREAT) to address these challenges. Through systematic analysis via the Structural Causal Model, we identify backdoor paths that undermine generalization and design two key modules to mitigate their effects. The *Dynamic-Static Equilibrium Decoupler (DyStaED)* disentangles static and dynamic states via orthogonal subspace projections, ensuring robust initialization. Furthermore, the *Causal Mediation for Coupled Dynamics (CMCD)* employs variational inference to estimate latent causal factors, reducing spurious correlations and enhancing universal coupling dynamics. Extensive experiments across diverse dynamical systems demonstrate that ours outperforms state-of-the-art methods within both in-distribution and out-of-distribution.

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STAR: Learning Diverse Robot Skill Abstractions through Rotation-Augmented Vector Quantization

Hao Li, Qi Lv, Rui Shao, Xiang Deng, Yinchuan Li, Jianye Hao, Liqiang Nie

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Transforming complex actions into discrete skill abstractions has demonstrated strong potential for robotic manipulation.Existing approaches mainly leverage latent variable models, e.g., VQ-VAE, to learn skill abstractions through learned vectors (codebooks), while they suffer from codebook collapse and modeling the causal relationship between learned skills. To address these limitations, we present **S**kill **T**raining with **A**ugmented **R**otation (**STAR**), a framework that advances both skill learning and composition to complete complex behaviors. Specifically, to prevent codebook collapse, we devise rotation-augmented residual skill quantization (RaRSQ).It encodes relative angles between encoder outputs into the gradient flow by rotation-based gradient mechanism. Points within the same skill code are forced to be either pushed apart or pulled closer together depending on gradient directions.Further, to capture the casual relationship between skills, we present causal skill transformer (CST) which explicitly models dependencies between skill representations through an autoregressive mechanism for coherent action generation.Extensive experiments demonstrate the superiority of STAR on both LIBERO benchmark and realworld tasks, with around 12% improvement over the baselines.

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Position: Algebra Unveils Deep Learning - An Invitation to Neuroalgebraic Geometry

Giovanni Luca Marchetti, Vahid Shahverdi, Stefano Mereta, Matthew Trager, Kathlén Kohn

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In this position paper, we promote the study of function spaces parameterized by machine learning models through the lens of algebraic geometry. To this end, we focus on algebraic models, such as neural networks with polynomial activations, whose associated function spaces are semi-algebraic varieties. We outline a dictionary between algebro-geometric invariants of these varieties, such as dimension, degree, and singularities, and fundamental aspects of machine learning, such as sample complexity, expressivity, training dynamics, and implicit bias. Along the way, we review the literature and discuss ideas beyond the algebraic domain. This work lays the foundations of a research direction bridging algebraic geometry and deep learning, that we refer to as neuroalgebraic geometry.

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Independence Tests for Language Models

Sally Zhu, Ahmed M Ahmed, Rohith Kuditipudi, Percy Liang

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Motivated by liability and intellectual property concerns over open-weight models we consider the following problem: given the weights of two models, can we test whether they were trained independently---i.e., from independent random initializations? We consider two settings: *constrained* and *unconstrained*. In the constrained setting, we make assumptions about model architecture and training and propose statistical tests that yield exact p-values with respect to the null hypothesis that the models are trained from independent random initializations. We compute the p-values by simulating exchangeable copies of each model under our assumptions and comparing various similarity measures between the original two models versus these copies. We report p-values on pairs of 21 open-weight models (210 total pairs) and find we correctly identify all pairs of non-independent models. In the unconstrained setting we make none of the prior assumptions and allow for adversarial evasion attacks that do not change model output. We thus propose a new test which matches hidden activations between two models, which is robust to these transformations and to changes in model architecture and can also identify specific non-independent components of models. Though we no longer obtain exact p-values from this test, empirically we find it reliably distinguishes non-independent models like a p-value. Notably, we can use the test to identify specific parts of one model that are derived from another (e.g., how Llama 3.1-8B was pruned to initialize Llama 3.2-3B, or shared layers between Mistral-7B and StripedHyena-7B), and it is even robust to retraining individual layers of either model from scratch.

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Learning Dynamics under Environmental Constraints via Measurement-Induced Bundle Structures

Dongzhe Zheng, Wenjie Mei

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Learning unknown dynamics under environmental (or external) constraints is fundamental to many fields (e.g., modern robotics), particularly challenging when constraint information is only locally available and uncertain. Existing approaches requiring global constraints or using probabilistic filtering fail to fully exploit the geometric structure inherent in local measurements (by using, e.g., sensors) and constraints. This paper presents a geometric framework unifying measurements, constraints, and dynamics learning through a fiber bundle structure over the state space. This naturally induced geometric structure enables measurement-aware Control Barrier Functions that adapt to local sensing (or measurement) conditions. By integrating Neural ODEs, our framework learns continuous-time dynamics while preserving geometric constraints, with theoretical guarantees of learning convergence and constraint satisfaction dependent on sensing quality. The geometric framework not only enables efficient dynamics learning but also suggests promising directions for integration with reinforcement learning approaches. Extensive simulations demonstrate significant improvements in both learning efficiency and constraint satisfaction over traditional methods, especially under limited and uncertain sensing conditions.

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Invariant Deep Uplift Modeling for Incentive Assignment in Online Marketing via Probability of Necessity and Sufficiency

Zexu Sun, Qiyu Han, Hao Yang, Anpeng Wu, Minqin Zhu, Dugang Liu, Chen Ma, Yunpeng Weng, Xing Tang, xiuqiang He

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In online platforms, incentives (\textit{e.g}., discounts, coupons) are used to boost user engagement and revenue. Uplift modeling methods are developed to estimate user responses from observational data, often incorporating distribution balancing to address selection bias. However, these methods are limited by in-distribution testing data, which mirrors the training data distribution. In reality, user features change continuously due to time, geography, and other factors, especially on complex online marketing platforms. Thus, effective uplift modeling method for out-of-distribution data is crucial. To address this, we propose a novel uplift modeling method \textbf{I}nvariant \textbf{D}eep \textbf{U}plift \textbf{M}odeling, namely \textbf{IDUM}, which uses invariant learning to enhance out-of-distribution generalization by identifying causal factors that remain consistent across domains. IDUM further refines these features into necessary and sufficient factors and employs a masking component to reduce computational costs by selecting the most informative invariant features. A balancing discrepancy component is also introduced to mitigate selection bias in observational data. We conduct extensive experiments on public and real-world datasets to demonstrate IDUM's effectiveness in both in-distribution and out-of-distribution scenarios in online marketing. Furthermore, we also provide theoretical analysis and related proofs to support our IDUM's generalizability.

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Continual Reinforcement Learning by Planning with Online World Models

Zichen Liu, Guoji Fu, Chao Du, Wee Sun Lee, Min Lin

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Continual reinforcement learning (CRL) refers to a naturalistic setting where an agent needs to endlessly evolve, by trial and error, to solve multiple tasks that are presented sequentially. One of the largest obstacles to CRL is that the agent may forget how to solve previous tasks when learning a new task, known as catastrophic forgetting. In this paper, we propose to address this challenge by planning with online world models. Specifically, we learn a Follow-The-Leader shallow model online to capture the world dynamics, in which we plan using model predictive control to solve a set of tasks specified by any reward functions. The online world model is immune to forgetting by construction with a proven regret bound of $\mathcal{O}(\sqrt{K^2D\log(T)})$ under mild assumptions. The planner searches actions solely based on the latest online model, thus forming a FTL Online Agent (OA) that updates incrementally. To assess OA, we further design Continual Bench, a dedicated environment for CRL, and compare with several strong baselines under the same model-planning algorithmic framework. The empirical results show that OA learns continuously to solve new tasks while not forgetting old skills, outperforming agents built on deep world models with various continual learning techniques.

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Towards Practical Defect-Focused Automated Code Review

Junyi Lu, Lili Jiang, Xiaojia Li, Jianbing Fang, Fengjun Zhang, Li Yang, Chun Zuo

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The complexity of code reviews has driven efforts to automate review comments, but prior approaches oversimplify this task by treating it as snippet-level code-to-text generation and relying on text similarity metrics like BLEU for evaluation. These methods overlook repository context, real-world merge request evaluation, and defect detection, limiting their practicality. To address these issues, we explore the full automation pipeline within the online recommendation service of a company with nearly 400 million daily active users, analyzing industry-grade C++ codebases comprising hundreds of thousands of lines of code. We identify four key challenges: 1) capturing relevant context, 2) improving key bug inclusion (KBI), 3) reducing false alarm rates (FAR), and 4) integrating human workflows. To tackle these, we propose 1) code slicing algorithms for context extraction, 2) a multi-role LLM framework for KBI, 3) a filtering mechanism for FAR reduction, and 4) a novel prompt design for better human interaction. Our approach, validated on real-world merge requests from historical fault reports, achieves a 2× improvement over standard LLMs and a 10× gain over previous baselines. While the presented results focus on C++, the underlying framework design leverages language-agnostic principles (e.g., AST-based analysis), suggesting potential for broader applicability.

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Fishers for Free? Approximating the Fisher Information Matrix by Recycling the Squared Gradient Accumulator

Yu Xin Li, Felix Dangel, Derek Tam, Colin Raffel

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The diagonal of a model's Fisher Information Matrix (the "Fisher") has frequently been used as a way to measure parameter sensitivity. Typically, the Fisher is estimated by computing the squared gradient of the model's outputs with respect to its parameters, averaged over a few hundred or thousand examples — a process which incurs nontrivial computational costs. At the same time, adaptive gradient methods like the ubiquitous Adam optimizer compute a moving average of the squared gradient over the course of training. This paper therefore explores whether an approximation of the Fisher can be obtained "for free" by recycling the squared gradient accumulator that has already been computed over the course of training. Through a comprehensive set of experiments covering five applications of the Fisher, we demonstrate that the "Squisher" (**Squ**ared gradient accumulator as an approximation of the F**isher**) consistently performs similarly to the Fisher while outperforming baseline methods. Additionally, we clarify the exact differences between the Squisher and the Fisher and provide empirical quantification of their respective impact.

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Feature learning from non-Gaussian inputs: the case of Independent Component Analysis in high dimensions

Fabiola Ricci, Lorenzo Bardone, Sebastian Goldt

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Deep neural networks learn structured features from complex, non-Gaussian inputs, but the mechanisms behind this process remain poorly understood. Our work is motivated by the observation that the first-layer filters learnt by deep convolutional neural networks from natural images resemble those learnt by independent component analysis (ICA), a simple unsupervised method that seeks the most non-Gaussian projections of its inputs. This similarity suggests that ICA provides a simple, yet principled model for studying feature learning. Here, we leverage this connection to investigate the interplay between data structure and optimisation in feature learning for the most popular ICA algorithm, FastICA, and stochastic gradient descent (SGD), which is used to train deep networks. We rigorously establish that FastICA requires at least $n\gtrsim d^4$ samples to recover a single non-Gaussian direction from $d$-dimensional inputs on a simple synthetic data model. We show that vanilla online SGD outperforms FastICA, and prove that the optimal sample complexity $n\gtrsim d^2$ can be reached by smoothing the loss, albeit in a data-dependent way. We finally demonstrate the existence of a search phase for FastICA on ImageNet, and discuss how the strong non-Gaussianity of said images compensates for the poor sample complexity of FastICA.

Spotlight
Hyperspherical Normalization for Scalable Deep Reinforcement Learning

Hojoon Lee, Youngdo Lee, Takuma Seno, Donghu Kim, Peter Stone, Jaegul Choo

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Scaling up the model size and computation has brought consistent performance improvements in supervised learning. However, this lesson often fails to apply to reinforcement learning (RL) because training the model on non-stationary data easily leads to overfitting and unstable optimization. In response, we introduce SimbaV2, a novel RL architecture designed to stabilize optimization by (i) constraining the growth of weight and feature norm by hyperspherical normalization; and (ii) using a distributional value estimation with reward scaling to maintain stable gradients under varying reward magnitudes. Using the soft actor-critic as a base algorithm, SimbaV2 scales up effectively with larger models and greater compute, achieving state-of-the-art performance on 57 continuous control tasks across 4 domains.

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Better to Teach than to Give: Domain Generalized Semantic Segmentation via Agent Queries with Diffusion Model Guidance

Fan Li, Xuan Wang, Min Qi, Zhaoxiang Zhang, Yuelei Xu

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Domain Generalized Semantic Segmentation (DGSS) trains a model on a labeled source domain to generalize to unseen target domains with consistent contextual distribution and varying visual appearance. Most existing methods rely on domain randomization or data generation but struggle to capture the underlying scene distribution, resulting in the loss of useful semantic information. Inspired by the diffusion model's capability to generate diverse variations within a given scene context, we consider harnessing its rich prior knowledge of scene distribution to tackle the challenging DGSS task. In this paper, we propose a novel agent \textbf{Query}-driven learning framework based on \textbf{Diff}usion model guidance for DGSS, named QueryDiff. Our recipe comprises three key ingredients: (1) generating agent queries from segmentation features to aggregate semantic information about instances within the scene; (2) learning the inherent semantic distribution of the scene through agent queries guided by diffusion features; (3) refining segmentation features using optimized agent queries for robust mask predictions. Extensive experiments across various settings demonstrate that our method significantly outperforms previous state-of-the-art methods. Notably, it enhances the model's ability to generalize effectively to extreme domains, such as cubist art styles. Code is available at https://github.com/FanLiHub/QueryDiff.

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Procurement Auctions via Approximately Optimal Submodular Optimization

Yuan Deng, amin karbasi, Vahab Mirrokni, Renato Paes Leme, Grigoris Velegkas, Song Zuo

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We study the problem of procurement auctions, in which an auctioneer seeks to acquire services from a group of strategic sellers with private costs. The quality of the services is measured through some submodular function that is known to the auctioneer. Our goal is to design computationally efficient procurement auctions that (approximately) maximize the difference between the quality of the acquired services and the total cost of the sellers, in a way that is incentive compatible (IC) and individual rational (IR) for the sellers, and generates non-negative surplus (NAS) for the auctioneer. {Our contribution is twofold: \textbf{i)} we provide an improved analysis of existing algorithms for non-positive submodular function maximization and \textbf{ii)} we design computationally efficient frameworks that transform submodular function optimization algorithms to mechanisms that are IC and IR for the sellers, NAS for the auctioneer, and approximation-preserving.} Our frameworks are general and work both in the offline setting where the auctioneer can observe the bids and the services of all the sellers simultaneously, and in the online setting where the sellers arrive in an adversarial order and the auctioneer has to make an irrevocable decision whether to purchase their service or not. We further investigate whether it is possible to convert state-of-art submodular optimization algorithms into descending auctions. We focus on the adversarial setting, meaning that the schedule of the descending prices is determined by an adversary. We show that a submodular optimization algorithm satisfying bi-criteria $(1/2,1)$-approximation in welfare can be effectively converted to a descending auction in this setting. We further establish a connection between descending auctions and online submodular optimization. Finally, we demonstrate the practical applications of our frameworks by instantiating them with different state-of-the-art submodular optimization algorithms and comparing their welfare performance through empirical experiments on publicly available datasets that consist of thousands of sellers.

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scSSL-Bench: Benchmarking Self-Supervised Learning for Single-Cell Data

Olga Ovcharenko, Florian Barkmann, Philip Toma, Imant Daunhawer, Julia E Vogt, Sebastian Schelter, Valentina Boeva

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Self-supervised learning (SSL) has proven to be a powerful approach for extracting biologically meaningful representations from single-cell data. To advance our understanding of SSL methods applied to single-cell data, we present scSSL-Bench, a comprehensive benchmark that evaluates nineteen SSL methods. Our evaluation spans nine datasets and focuses on three common downstream tasks: batch correction, cell type annotation, and missing modality prediction. Furthermore, we systematically assess various data augmentation strategies. Our analysis reveals task-specific trade-offs: the specialized single-cell frameworks, scVI, CLAIRE, and the finetuned scGPT excel at uni-modal batch correction, while generic SSL methods, such as VICReg and SimCLR, demonstrate superior performance in cell typing and multi-modal data integration. Random masking emerges as the most effective augmentation technique across all tasks, surpassing domain-specific augmentations. Notably, our results indicate the need for a specialized single-cell multi-modal data integration framework. scSSL-Bench provides a standardized evaluation platform and concrete recommendations for applying SSL to single-cell analysis, advancing the convergence of deep learning and single-cell genomics.

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On Learning Parallel Pancakes with Mostly Uniform Weights

Ilias Diakonikolas, Daniel Kane, Sushrut Karmalkar, Jasper C.H. Lee, Thanasis Pittas

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We study the complexity of learning $k$-mixtures of Gaussians ($k$-GMMs) on $\mathbb R^d$. This task is known to have complexity $d^{\Omega(k)}$ in full generality. To circumvent this exponential lower bound on the number of components, research has focused on learning families of GMMs satisfying additional structural properties. A natural assumption posits that the component weights are not exponentially small and that the components have the same unknown covariance. Recent work gave a $d^{O(\log(1/w_{\min}))}$-time algorithm for this class of GMMs, where $w_{\min}$ is the minimum weight. Our first main result is a Statistical Query (SQ) lower bound showing that this quasi-polynomial upper bound is essentially best possible, even for the special case of uniform weights. Specifically, we show that it is SQ-hard to distinguish between such a mixture and the standard Gaussian. We further explore how the distribution of weights affects the complexity of this task. Our second main result is a quasi-polynomial upper bound for the aforementioned testing task when most of the weights are uniform while a small fraction of the weights are potentially arbitrary.

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Geometric Hyena Networks for Large-scale Equivariant Learning

Artem Moskalev, Mangal Prakash, Junjie Xu, Tianyu Cui, Rui Liao, Tommaso Mansi

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Processing global geometric context while preserving equivariance is crucial when modeling biological, chemical, and physical systems. Yet, this is challenging due to the computational demands of equivariance and global context at scale. Standard methods such as equivariant self-attention suffer from quadratic complexity, while local methods such as distance-based message passing sacrifice global information. Inspired by the recent success of state-space and long-convolutional models, we introduce Geometric Hyena, the first equivariant long-convolutional model for geometric systems. Geometric Hyena captures global geometric context at sub-quadratic complexity while maintaining equivariance to rotations and translations. Evaluated on all-atom property prediction of large RNA molecules and full protein molecular dynamics, Geometric Hyena outperforms existing equivariant models while requiring significantly less memory and compute that equivariant self-attention. Notably, our model processes the geometric context of $30k$ tokens $20 \times$ faster than the equivariant transformer and allows $72 \times$ longer context within the same budget.

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Elucidating the Design Space of Multimodal Protein Language Models

Cheng-Yen Hsieh, Xinyou Wang, Daiheng Zhang, Dongyu Xue, Fei YE, Shujian Huang, Zaixiang Zheng, Quanquan Gu

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Multimodal protein language models (PLMs) integrate sequence and token-based structural information, serving as a powerful foundation for protein modeling, generation, and design. However, the reliance on tokenizing 3D structures into discrete tokens causes substantial loss of fidelity about fine-grained structural details and correlations. In this paper, we systematically elucidate the design space of multimodal PLMs to overcome their limitations. We identify tokenization loss and inaccurate structure token predictions by the PLMs as major bottlenecks. To address these, our proposed design space covers improved generative modeling, structure-aware architectures and representation learning, and data exploration. Our advancements approach finer-grained supervision, demonstrating that token-based multimodal PLMs can achieve robust structural modeling. The effective design methods dramatically improve the structure generation diversity, and notably, folding abilities of our 650M model by reducing the RMSD from 5.52 to 2.36 on PDB testset, even outperforming 3B baselines and on par with the specialized folding models. Project page and code: https://bytedance.github.io/dplm/dplm-2.1.

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BaxBench: Can LLMs Generate Correct and Secure Backends?

Mark Vero, Niels Mündler, Victor Chibotaru, Veselin Raychev, Maximilian Baader, Nikola Jovanović, Jingxuan He, Martin Vechev

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Automatic program generation has long been a fundamental challenge in computer science. Recent benchmarks have shown that large language models (LLMs) can effectively generate code at the function level, make code edits, and solve algorithmic coding tasks. However, to achieve full automation, LLMs should be able to generate production-quality, self-contained application modules. To evaluate the capabilities of LLMs in solving this challenge, we introduce BaxBench, a novel evaluation benchmark consisting of 392 tasks for the generation of backend applications. We focus on backends for three critical reasons: (i) they are practically relevant, building the core components of most modern web and cloud software, (ii) they are difficult to get right, requiring multiple functions and files to achieve the desired functionality, and (iii) they are security-critical, as they are exposed to untrusted third-parties, making secure solutions that prevent deployment-time attacks an imperative. BaxBench validates the functionality of the generated applications with comprehensive test cases, and assesses their security exposure by executing end-to-end exploits. Our experiments reveal key limitations of current LLMs in both functionality and security: (i) even the best model, OpenAI o1, achieves a mere 62% on code correctness; (ii) on average, we could successfully execute security exploits on around half of the correct programs generated by each LLM; and (iii) in less popular backend frameworks, models further struggle to generate correct and secure applications. Progress on BaxBench signifies important steps towards autonomous and secure software development with LLMs.

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Automatically Identify and Rectify: Robust Deep Contrastive Multi-view Clustering in Noisy Scenarios

Xihong Yang, Siwei Wang, Fangdi Wang, Jiaqi Jin, Suyuan Liu, Yue Liu, En Zhu, Xinwang Liu, Yueming Jin

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Leveraging the powerful representation learning capabilities, deep multi-view clustering methods have demonstrated reliable performance by effectively integrating multi-source information from diverse views in recent years. Most existing methods rely on the assumption of clean views. However, noise is pervasive in real-world scenarios, leading to a significant degradation in performance. To tackle this problem, we propose a novel multi-view clustering framework for the automatic identification and rectification of noisy data, termed AIRMVC. Specifically, we reformulate noisy identification as an anomaly identification problem using GMM. We then design a hybrid rectification strategy to mitigate the adverse effects of noisy data based on the identification results. Furthermore, we introduce a noise-robust contrastive mechanism to generate reliable representations. Additionally, we provide a theoretical proof demonstrating that these representations can discard noisy information, thereby improving the performance of downstream tasks. Extensive experiments on six benchmark datasets demonstrate that AIRMVC outperforms state-of-the-art algorithms in terms of robustness in noisy scenarios. The code of AIRMVC are available at https://github.com/xihongyang1999/AIRMVC on Github.

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Primal-Dual Neural Algorithmic Reasoning

Yu He, Ellen Vitercik

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Neural Algorithmic Reasoning (NAR) trains neural networks to simulate classical algorithms, enabling structured and interpretable reasoning over complex data. While prior research has predominantly focused on learning exact algorithms for polynomial-time-solvable problems, extending NAR to harder problems remains an open challenge. In this work, we introduce a general NAR framework grounded in the primal-dual paradigm, a classical method for designing efficient approximation algorithms. By leveraging a bipartite representation between primal and dual variables, we establish an alignment between primal-dual algorithms and Graph Neural Networks. Furthermore, we incorporate optimal solutions from small instances to greatly enhance the model’s reasoning capabilities. Our empirical results demonstrate that our model not only simulates but also outperforms approximation algorithms for multiple tasks, exhibiting robust generalization to larger and out-of-distribution graphs. Moreover, we highlight the framework’s practical utility by integrating it with commercial solvers and applying it to real-world datasets.

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