ICML 2025 Papers

International Conference on Machine Learning

Decision breakdown

3,342papers

Counted from the official paper list; may differ slightly from the number the conference announced.

  • Oral
    1213.6%
  • Spotlight
    2256.7%
  • Poster
    2,99689.6%

Browse all papers

NMA-tune: Generating Highly Designable and Dynamics Aware Protein Backbones

Urszula Julia Komorowska, Francisco Vargas, Alessandro Rondina, Pietro Lio, Mateja Jamnik

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Protein's backbone flexibility is a crucial property that heavily influences its functionality. Recent work in the field of protein diffusion probabilistic modelling has leveraged Normal Mode Analysis (NMA) and, for the first time, introduced information about large scale protein motion into the generative process. However, obtaining molecules with both the desired dynamics and designable quality has proven challenging. In this work, we present NMA-tune, a new method that introduces the dynamics information to the protein design stage. NMA-tune uses a trainable component to condition the backbone generation on the lowest normal mode of oscillation. We implement NMA-tune as a plug-and-play extension to RFdiffusion, show that the proportion of samples with high quality structure and the desired dynamics is improved as compared to other methods without the trainable component, and we show the presence of the targeted modes in the Molecular Dynamics simulations.

Poster
Scaffold with Stochastic Gradients: New Analysis with Linear Speed-Up

Paul Mangold, Alain Oliviero Durmus, Aymeric Dieuleveut, Eric Moulines

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This paper proposes a novel analysis for the Scaffold algorithm, a popular method for dealing with data heterogeneity in federated learning. While its convergence in deterministic settings—where local control variates mitigate client drift—is well established, the impact of stochastic gradient updates on its performance is less understood. To address this problem, we first show that its global parameters and control variates define a Markov chain that converges to a stationary distribution in the Wasserstein distance. Leveraging this result, we prove that Scaffold achieves linear speed-up in the number of clients up to higher-order terms in the step size. Nevertheless, our analysis reveals that Scaffold retains a higher-order bias, similar to FedAvg, that does not decrease as the number of clients increases. This highlights opportunities for developing improved stochastic federated learning algorithms.

Poster
Does One-shot Give the Best Shot? Mitigating Model Inconsistency in One-shot Federated Learning

Hui Zeng, Wenke Huang, Tongqing Zhou, Xinyi Wu, G. W., Yingwen Chen, Zhiping Cai

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Turning the multi-round vanilla Federated Learning into one-shot FL (OFL) significantly reduces the communication burden and makes a big leap toward practical deployment. However, this work empirically and theoretically unravels that existing OFL falls into a garbage (inconsistent one-shot local models) in and garbage (degraded global model) out pitfall. The inconsistency manifests as divergent feature representations and sample predictions. This work presents a novel OFL framework FAFI that enhances the one-shot training on the client side to essentially overcome inferior local uploading. Specifically, unsupervised feature alignment and category-wise prototype learning are adopted for clients' local training to be consistent in representing local samples. On this basis, FAFI uses informativeness-aware feature fusion and prototype aggregation for global inference. Extensive experiments on three datasets demonstrate the effectiveness of FAFI, which facilitates superior performance compared with 11 OFL baselines (+10.86% accuracy). Code available at https://github.com/zenghui9977/FAFI_ICML25

Poster
Distributed Differentially Private Data Analytics via Secure Sketching

Jakob Burkhardt, Hannah Keller, Claudio Orlandi, Chris Schwiegelshohn

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We introduce the *linear-transformation model*, a distributed model of differentially private data analysis. Clients have access to a trusted platform capable of applying a public matrix to their inputs. Such computations can be securely distributed across multiple servers using simple and efficient secure multiparty computation techniques. The linear-transformation model serves as an intermediate model between the highly expressive *central model* and the minimal *local model*. In the central model, clients have access to a trusted platform capable of applying any function to their inputs. However, this expressiveness comes at a cost, as it is often expensive to distribute such computations, leading to the central model typically being implemented by a single trusted server. In contrast, the local model assumes no trusted platform, which forces clients to add significant noise to their data. The linear-transformation model avoids the single point of failure for privacy present in the central model, while also mitigating the high noise required in the local model. We demonstrate that linear transformations are very useful for differential privacy, allowing for the computation of linear sketches of input data. These sketches largely preserve utility for tasks such as private low-rank approximation and private ridge regression, while introducing only minimal error, critically independent of the number of clients.

Poster
M³HF: Multi-agent Reinforcement Learning from Multi-phase Human Feedback of Mixed Quality

Ziyan Wang, Zhicheng Zhang, Fei Fang, Yali Du

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Designing effective reward functions in multi-agent reinforcement learning (MARL) is a significant challenge, often leading to suboptimal or misaligned behaviors in complex, coordinated environments. We introduce Multi-agent Reinforcement Learning from Multi-phase Human Feedback of Mixed Quality ($\text{M}^3\text{HF}$), a novel framework that integrates multi-phase human feedback of mixed quality into the MARL training process. By involving humans with diverse expertise levels to provide iterative guidance, $\text{M}^3\text{HF}$ leverages both expert and non-expert feedback to continuously refine agents' policies. During training, we strategically pause agent learning for human evaluation, parse feedback using large language models to assign it appropriately and update reward functions through predefined templates and adaptive weights by using weight decay and performance-based adjustments. Our approach enables the integration of nuanced human insights across various levels of quality, enhancing the interpretability and robustness of multi-agent cooperation. Empirical results in challenging environments demonstrate that $\text{M}^3\text{HF}$ significantly outperforms state-of-the-art methods, effectively addressing the complexities of reward design in MARL and enabling broader human participation in the training process.

Poster
The Polynomial Stein Discrepancy for Assessing Moment Convergence

Narayan Srinivasan, Matthew Sutton, Christopher Drovandi, Leah F South

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We propose a novel method for measuring the discrepancy between a set of samples and a desired posterior distribution for Bayesian inference. Classical methods for assessing sample quality like the effective sample size are not appropriate for scalable Bayesian sampling algorithms, such as stochastic gradient Langevin dynamics, that are asymptotically biased. Instead, the gold standard is to use the kernel Stein Discrepancy (KSD), which is itself not scalable given its quadratic cost in the number of samples. The KSD and its faster extensions also typically suffer from the curse-of-dimensionality and can require extensive tuning. To address these limitations, we develop the polynomial Stein discrepancy (PSD) and an associated goodness-of-fit test. While the new test is not fully convergence-determining, we prove that it detects differences in the first $r$ moments for Gaussian targets. We empirically show that the test has higher power than its competitors in several examples, and at a lower computational cost. Finally, we demonstrate that the PSD can assist practitioners to select hyper-parameters of Bayesian sampling algorithms more efficiently than competitors.

Poster
Understanding and Improving Length Generalization in Recurrent Models

Ricardo Buitrago, Albert Gu

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Recently, recurrent models such as state space models and linear attention have become popular due to their linear complexity in the sequence length. Thanks to their recurrent nature, in principle they can process arbitrarily long sequences, but their performance sometimes drops considerably beyond their training context lengths---i.e. they fail to length generalize. In this work, we provide comprehensive empirical and theoretical analysis to support the \textit{unexplored states hypothesis}, which posits that models fail to length generalize when during training they are only exposed to a limited subset of the distribution of all \textit{attainable} states (i.e. states that would be attained if the recurrence was applied to long sequences). Furthermore, we investigate simple training interventions that aim to increase the coverage of the states that the model is trained on, e.g. by initializing the state with Gaussian noise or with the final state of a different input sequence. With only 500 post-training steps ($\sim 0.1\%$ of the pre-training budget), these interventions enable length generalization for sequences that are orders of magnitude longer than the training context (e.g. $2k\longrightarrow 128k$) and show improved performance in long context tasks, thus presenting a simple and efficient way to enable robust length generalization in general recurrent models.

Poster
Interchangeable Token Embeddings for Extendable Vocabulary and Alpha-Equivalence

İlker Işık, Ramazan Gokberk Cinbis, Ebru Aydin Gol

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Language models lack the notion of interchangeable tokens: symbols that are semantically equivalent yet distinct, such as bound variables in formal logic. This limitation prevents generalization to larger vocabularies and hinders the model's ability to recognize alpha-equivalence, where renaming bound variables preserves meaning. We formalize this machine learning problem and introduce alpha-covariance, a metric for evaluating robustness to such transformations. To tackle this task, we propose a dual-part token embedding strategy: a shared component ensures semantic consistency, while a randomized component maintains token distinguishability. Compared to a baseline that relies on alpha-renaming for data augmentation, our approach demonstrates improved generalization to unseen tokens in linear temporal logic solving, propositional logic assignment prediction, and copying with an extendable vocabulary, while introducing a favorable inductive bias for alpha-equivalence. Our findings establish a foundation for designing language models that can learn interchangeable token representations, a crucial step toward more flexible and systematic reasoning in formal domains. Our code and project page are available at https://necrashter.github.io/interchangeable-token-embeddings

Poster
Mastering Multiple-Expert Routing: Realizable $H$-Consistency and Strong Guarantees for Learning to Defer

Anqi Mao, Mehryar Mohri, Yutao Zhong

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The problem of learning to defer with multiple experts consists of optimally assigning input instances to experts, balancing the trade-off between their accuracy and computational cost. This is a critical challenge in natural language generation, but also in other fields such as image processing, and medical diagnostics. Recent studies have proposed surrogate loss functions to optimize deferral, but challenges remain in ensuring their consistency properties. This paper introduces novel surrogate loss functions and efficient algorithms with strong theoretical learning guarantees. We address open questions regarding realizable $H$-consistency, $H$-consistency bounds, and Bayes-consistency for both single-stage (jointly learning predictor and deferral function) and two-stage (learning only the deferral function with a fixed expert) learning scenarios. For single-stage deferral, we introduce a family of new realizable $H$-consistent surrogate losses and further prove $H$-consistency for a selected member. For two-stage deferral, we derive new surrogate losses that achieve realizable $H$-consistency, $H$-consistency bounds, and Bayes-consistency for the two-expert scenario and, under natural assumptions, multiple-expert scenario. Additionally, we provide enhanced theoretical guarantees under low-noise assumptions for both scenarios. Finally, we report the results of experiments using our proposed surrogate losses, comparing their performance against existing baselines.

Poster
Reward Modeling with Ordinal Feedback: Wisdom of the Crowd

Shang Liu, Yu Pan, Guanting Chen, Xiaocheng Li

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The canonical setup of learning a reward model (RM) from human preferences with binary feedback discards potentially useful samples (such as "tied" between the two responses) and loses fine-grained information (such as "slightly better'"). This paper proposes a framework for learning RMs under *ordinal feedback*, generalizing the binary feedback to arbitrary granularity. We first identify a marginal unbiasedness condition, which generalizes the existing assumption of the binary feedback. The condition is validated via the sociological concept called "wisdom of the crowd". Under this condition, we develop a natural probability model and prove the benefits of fine-grained feedback in terms of reducing the Rademacher complexity, which may be of independent interest to another problem: the bias-variance trade-off in knowledge distillation. The framework also sheds light on designing guidelines for human annotators. Our numerical experiments validate that: (1) fine-grained feedback leads to better RM learning for both in- and out-of-distribution settings; (2) incorporating a certain proportion of tied samples boosts RM learning.

Poster
Metastable Dynamics of Chain-of-Thought Reasoning: Provable Benefits of Search, RL and Distillation

Juno Kim, Denny Wu, Jason D. Lee, Taiji Suzuki

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A key paradigm to improve the reasoning capabilities of large language models (LLMs) is to allocate more inference-time compute to search against a verifier or reward model. This process can then be utilized to refine the pretrained model or distill its reasoning patterns into more efficient models. In this paper, we study inference-time computation by viewing chain-of-thought (CoT) generation as a metastable Markov process: easy reasoning steps (e.g., algebraic manipulations) form densely connected clusters, while hard reasoning steps (e.g., applying a relevant theorem) create sparse, low-probability edges between clusters, leading to phase transitions at longer timescales. Under this framework, we prove that implementing a search protocol that rewards sparse edges improves CoT by decreasing the expected number of steps to reach different clusters. In contrast, we establish a limit on reasoning capability when the model is restricted to local information of the pretrained graph. We also show that the information gained by search can be utilized to obtain a better reasoning model: (1) the pretrained model can be directly finetuned to favor sparse edges via policy gradient methods, and moreover (2) a compressed \emph{metastable representation} of the reasoning dynamics can be distilled into a smaller, more efficient model.

Poster
The Berkeley Function Calling Leaderboard (BFCL): From Tool Use to Agentic Evaluation of Large Language Models

Shishir G Patil, Huanzhi Mao, Fanjia Yan, Charlie Cheng-Jie Ji, Vishnu Suresh, Ion Stoica, Joseph E. Gonzalez

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Function calling, also called tool use, refers to an LLM's ability to invoke external functions, APIs, or user-defined tools in response to user queries—an essential capability for agentic LLM applications. Despite its prominence, there did not exist a standard benchmark to evaluate function calling abilities, due to two reasons – the challenging nature of evaluating when a function call is valid, and the challenge of acquiring diverse, real-world functions. We present the Berkeley Function Calling Leaderboard (BFCL), a comprehensive benchmark designed to evaluate function calling capabilities in a wide range of real-world settings. The BFCL benchmark evaluates serial and parallel function calls, across various programming languages using a novel Abstract Syntax Tree (AST) evaluation method that can easily scale to thousands of functions. We construct the benchmark using a combination of expert curated, and user-contributed functions and associated prompts. Finally, BFCL benchmark evaluates the ability of models to abstain and reason in stateful multi-step agentic setting. Evaluating a wide range of models, we observe that while state-of-the-art LLMs excel at singleturn calls, memory, dynamic decision-making, and long-horizon reasoning remain open challenges. Since its preview, BFCL has become the defacto standard for evaluating function-calls, and can be accessed at gorilla.cs.berkeley.edu/leaderboard.html.

Poster
Supervised Contrastive Learning from Weakly-Labeled Audio Segments for Musical Version Matching

Joan Serrà, R. Oguz Araz, Dmitry Bogdanov, Yuki Mitsufuji

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Detecting musical versions (different renditions of the same piece) is a challenging task with important applications. Because of the ground truth nature, existing approaches match musical versions at the track level (e.g., whole song). However, most applications require to match them at the segment level (e.g., 20s chunks). In addition, existing approaches resort to classification and triplet losses, disregarding more recent losses that could bring meaningful improvements. In this paper, we propose a method to learn from weakly annotated segments, together with a contrastive loss variant that outperforms well-studied alternatives. The former is based on pairwise segment distance reductions, while the latter modifies an existing loss following decoupling, hyper-parameter, and geometric considerations. With these two elements, we do not only achieve state-of-the-art results in the standard track-level evaluation, but we also obtain a breakthrough performance in a segment-level evaluation. We believe that, due to the generality of the challenges addressed here, the proposed methods may find utility in domains beyond audio or musical version matching.

Poster
Improving Reward Model Generalization from Adversarial Process Enhanced Preferences

Zhilong Zhang, Tian Xu, Xinghao Du, Xingchen Cao, Yihao Sun, Yang Yu

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In sequential decision-making, the reward function serves as the primary supervision signal, guiding agents to acquire the desired behaviors. Traditional reward modeling methods rely heavily on human expertise, limiting their scalability. Automated preference generation from suboptimal demonstrations has emerged as a promising alternative to address this limitation. This approach first generates preference data from suboptimal demonstrations and then trains reward models based on these preferences. Despite its potential, existing methods often struggle to generate preference data with sufficient coverage, limiting the accuracy and generalizability of the resulting reward models. To overcome this limitation, we propose APEC (Automated Preference generation with Enhanced Coverage), a novel method that improves the coverage of preference data. APEC achieves this by selecting policy pairs with significantly different iteration indices from the whole adversarial imitation learning process. We provide a theoretical analysis to validate that the selected policy pairs provably hold preference relationships. Experimental results demonstrate that APEC consistently outperforms baseline methods in generating preferences with broader coverage across both vector-based and pixel-based control tasks. Consequently, the reward models trained with APEC align more closely with ground-truth rewards, deriving improved policy performance.

Poster
Pre-training Auto-regressive Robotic Models with 4D Representations

Dantong Niu, Yuvan Sharma, Haoru Xue, Giscard Biamby, Junyi Zhang, Ziteng Ji, Trevor Darrell, Roei Herzig

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Foundation models pre-trained on massive unlabeled datasets have revolutionized natural language and computer vision, exhibiting remarkable generalization capabilities, thus highlighting the importance of pre-training. Yet, efforts in robotics have struggled to achieve similar success, limited by either the need for costly robotic annotations or the lack of representations that effectively model the physical world. In this paper, we introduce ARM4R, an **A**uto-regressive **R**obotic **M**odel that leverages low-level **4**D **R**epresentations learned from human video data to yield a better pre-trained robotic model. Specifically, we focus on utilizing 3D point tracking representations from videos derived by lifting 2D representations into 3D space via monocular depth estimation across time. These 4D representations maintain a shared geometric structure between the points and robot state representations up to a linear transformation, enabling efficient transfer learning from human video data to low-level robotic control. Our experiments show that ARM4R can transfer efficiently from human video data to robotics and consistently improves performance on tasks across various robot environments and configurations.

Poster
Looking Beyond the Top-1: Transformers Determine Top Tokens in Order

Daria Lioubashevski, Tomer M. Schlank, Gabriel Stanovsky, Ariel Goldstein

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Uncovering the inner mechanisms of Transformer models offers insights into how they process and represent information. In this work, we analyze the computation performed by Transformers in the layers after the top-1 prediction remains fixed, known as the “saturation event”. We expand this concept to top-k tokens, demonstrating that similar saturation events occur across language, vision, and speech models. We find that these events occur in order of the corresponding tokens’ ranking, i.e., the model first decides on the top ranking token, then the second highest ranking token, and so on. This phenomenon seems intrinsic to the Transformer architecture, occurring across different variants, and even in untrained Transformers. We propose that these events reflect task transitions, where determining each token corresponds to a discrete task. We show that it is possible to predict the current task from hidden layer embedding, and demonstrate that we can cause the model to switch to the next task via intervention. Leveraging our findings, we introduce a token-level early-exit strategy, surpassing existing methods in balancing performance and efficiency and show how to exploit saturation events for better language modeling.

Poster
KoopSTD: Reliable Similarity Analysis between Dynamical Systems via Approximating Koopman Spectrum with Timescale Decoupling

Shimin Zhang, Ziyuan Ye, Yinsong Yan, Zeyang Song, Yujie Wu, Jibin Wu

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Determining the similarity between dynamical systems remains a long-standing challenge in both machine learning and neuroscience. Recent works based on Koopman operator theory have proven effective in analyzing dynamical similarity by examining discrepancies in the Koopman spectrum. Nevertheless, existing similarity metrics can be severely constrained when systems exhibit complex nonlinear behaviors across multiple temporal scales. In this work, we propose **KoopSTD**, a dynamical similarity measurement framework that precisely characterizes the underlying dynamics by approximating the Koopman spectrum with explicit timescale decoupling and spectral residual control. We show that KoopSTD maintains invariance under several common representation-space transformations, which ensures robust measurements across different coordinate systems. Our extensive experiments on physical and neural systems validate the effectiveness, scalability, and robustness of KoopSTD compared to existing similarity metrics. We also apply KoopSTD to explore two open-ended research questions in neuroscience and large language models, highlighting its potential to facilitate future scientific and engineering discoveries. Code is available at [link](https://github.com/ZhangShimin1/KoopSTD).

Poster
Polynomial Time Learning Augmented Algorithms for NP-hard Permutation Problems

Evripidis Bampis, Bruno Escoffier, Dimitris Fotakis, Panagiotis Patsilinakos, Michalis Xefteris

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We consider a learning augmented framework for NP-hard permutation problems. The algorithm has access to predictions telling, given a pair $u,v$ of elements, whether $u$ is before $v$ or not in an optimal solution. Building on the work of Braverman and Mossel (SODA 2008), we show that for a class of optimization problems including scheduling, network design and other graph permutation problems, these predictions allow to solve them in polynomial time with high probability, provided that predictions are true with probability at least $1/2+\epsilon$. Moreover, this can be achieved with a parsimonious access to the predictions.

Poster
Commute Graph Neural Networks

Wei Zhuo, Han Yu, Guang Tan, Xiaoxiao Li

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Graph Neural Networks (GNNs) have shown remarkable success in learning from graph-structured data. However, their application to directed graphs (digraphs) presents unique challenges, primarily due to the inherent asymmetry in node relationships. Traditional GNNs are adept at capturing unidirectional relations but fall short in encoding the mutual path dependencies between nodes, such as asymmetrical shortest paths typically found in digraphs. Recognizing this gap, we introduce Commute Graph Neural Networks (CGNN), an approach that seamlessly integrates node-wise commute time into the message passing scheme. The cornerstone of CGNN is an efficient method for computing commute time using a newly formulated digraph Laplacian. Commute time is then integrated into the neighborhood aggregation process, with neighbor contributions weighted according to their respective commute time to the central node in each layer. It enables CGNN to directly capture the mutual, asymmetric relationships in digraphs. Extensive experiments on 8 benchmarking datasets confirm the superiority of CGNN against 13 state-of-the-art methods.

Poster
SITCOM: Step-wise Triple-Consistent Diffusion Sampling For Inverse Problems

Ismail Alkhouri, Shijun Liang, Cheng-Han Huang, Jimmy Dai, Qing Qu, Saiprasad Ravishankar, Rongrong Wang

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Diffusion models (DMs) are a class of generative models that allow sampling from a distribution learned over a training set. When applied to solving inverse problems, the reverse sampling steps are modified to approximately sample from a measurement-conditioned distribution. However, these modifications may be unsuitable for certain settings (e.g., presence of measurement noise) and non-linear tasks, as they often struggle to correct errors from earlier steps and generally require a large number of optimization and/or sampling steps. To address these challenges, we state three conditions for achieving measurement-consistent diffusion trajectories. Building on these conditions, we propose a new optimization-based sampling method that not only enforces standard data manifold measurement consistency and forward diffusion consistency, as seen in previous studies, but also incorporates our proposed step-wise and network-regularized backward diffusion consistency that maintains a diffusion trajectory by optimizing over the input of the pre-trained model at every sampling step. By enforcing these conditions (implicitly or explicitly), our sampler requires significantly fewer reverse steps. Therefore, we refer to our method as **S**tep-w**i**se **T**riple-**Co**nsistent Sa**m**pling (**SITCOM**). Compared to SOTA baselines, our experiments across several linear and non-linear tasks (with natural and medical images) demonstrate that SITCOM achieves competitive or superior results in terms of standard similarity metrics and run-time.

Poster