Hardware-Aware ML

Group Equivariant CNNs (G-CNNs) have shown promising efficacy in various tasks, owing to their ability to capture hierarchical features in an equivariant manner. However, their equivariance is fixed to the symmetry of the whole group, limiting adaptability to diverse partial symmetries in real-world datasets, such as limited rotation symmetry of handwritten digit images and limited color-shift symmetry of flower images. Recent efforts address this limitation, one example being Partial G-CNN which restricts the output group space of convolution layers to break full equivariance. However, such an approach still fails to adjust equivariance levels across data. In this paper, we propose a novel approach, Variational Partial G-CNN (VP G-CNN), to capture varying levels of partial equivariance specific to each data instance. VP G-CNN redesigns the distribution of the output group elements to be conditioned on input data, leveraging variational inference to avoid overfitting. This enables the model to adjust its equivariance levels according to the needs of individual data points. Additionally, we address training instability inherent in discrete group equivariance models by redesigning the reparametrizable distribution. We demonstrate the effectiveness of VP G-CNN on both toy and real-world datasets, including MNIST67-180, CIFAR10, ColorMNIST, and Flowers102. Our results show robust performance, even in uncertainty metrics.

Fragment-based drug discovery is an effective strategy for discovering drug candidates in the vast chemical space, and has been widely employed in molecular generative models. However, many existing fragment extraction methods in such models do not take the target chemical properties into account or rely on heuristic rules. Additionally, the existing fragment-based generative models cannot update the fragment vocabulary with goal-aware fragments newly discovered during the generation. To this end, we propose a molecular generative framework for drug discovery, named *Goal-aware fragment Extraction, Assembly, and Modification* (GEAM). GEAM consists of three modules, each responsible for goal-aware fragment extraction, fragment assembly, and fragment modification. The fragment extraction module identifies important fragments contributing to the desired target properties with the information bottleneck principle, thereby constructing an effective goal-aware fragment vocabulary. Moreover, GEAM can explore beyond the initial vocabulary with the fragment modification module, and the exploration is further enhanced through the dynamic goal-aware vocabulary update. We experimentally demonstrate that GEAM effectively discovers drug candidates through the generative cycle of the three modules in various drug discovery tasks. Our code is available at https://github.com/SeulLee05/GEAM.

High utility and rigorous data privacy are of the main goals of a federated learning (FL) system, which learns a model from the data distributed among some clients. The latter has been tried to achieve by using differential privacy in FL (DPFL). There is often heterogeneity in clients' privacy requirements, and existing DPFL works either assume uniform privacy requirements for clients or are not applicable when server is not fully trusted (our setting). Furthermore, there is often heterogeneity in batch and/or dataset size of clients, which as shown, results in extra variation in the DP noise level across clients' model updates. With these sources of heterogeneity, straightforward aggregation strategies, e.g., assigning clients' aggregation weights proportional to their privacy parameters ($\epsilon$) will lead to lower utility. We propose Robust-HDP, which efficiently estimates the true noise level in clients' model updates and reduces the noise-level in the aggregated model updates considerably. Robust-HDP improves utility and convergence speed, while being safe to the clients that may maliciously send falsified privacy parameter $\epsilon$ to server. Extensive experimental results on multiple datasets and our theoretical analysis confirm the effectiveness of Robust-HDP. Our code can be found here: https://github.com/Saber-mm/HDPFL.git

In the machine learning ecosystem, hardware selection is often regarded as a mere utility, overshadowed by the spotlight on algorithms and data. This is especially relevant in contexts like ML-as-a-service platforms, where users often lack control over the hardware used for model deployment. This paper investigates the influence of hardware on the delicate balance between model performance and fairness. We demonstrate that hardware choices can exacerbate existing disparities, attributing these discrepancies to variations in gradient flows and loss surfaces across different demographic groups. Through both theoretical and empirical analysis, the paper not only identifies the underlying factors but also proposes an effective strategy for mitigating hardware-induced performance imbalances.

Sharpness-aware minimization (SAM) methods have gained increasing popularity by formulating the problem of minimizing both loss value and loss sharpness as a minimax objective. In this work, we increase the efficiency of the maximization and minimization parts of SAM's objective to achieve a better loss-sharpness trade-off. By taking inspiration from the Lookahead optimizer, which uses multiple descent steps ahead, we propose Lookbehind, which performs multiple ascent steps behind to enhance the maximization step of SAM and find a worst-case perturbation with higher loss. Then, to mitigate the variance in the descent step arising from the gathered gradients across the multiple ascent steps, we employ linear interpolation to refine the minimization step. Lookbehind leads to a myriad of benefits across a variety of tasks. Particularly, we show increased generalization performance, greater robustness against noisy weights, as well as improved learning and less catastrophic forgetting in lifelong learning settings. Our code is available at https://github.com/chandar-lab/Lookbehind-SAM.

Existing event-based motion deblurring methods mostly focus on restoring images with the same spatial and temporal scales as events. However, the unknown scales of images and events in the real world pose great challenges and have rarely been explored. To address this gap, we propose a novel Scale-Aware Spatio-temporal Network (SASNet) to flexibly restore blurred images with event streams at arbitrary scales. The core idea is to implicitly aggregate both spatial and temporal correspondence features of images and events to generalize at continuous scales. To restore highly blurred local areas, we develop a Spatial Implicit Representation Module (SIRM) to aggregate spatial correlation at any resolution through event encoding sampling. To tackle global motion blur, a Temporal Implicit Representation Module (TIRM) is presented to learn temporal correlation via temporal shift operations with long-term aggregation. Additionally, we build a High-resolution Hybrid Deblur (H2D) dataset using a new-generation hybrid event-based sensor, which comprises images with naturally spatially aligned and temporally synchronized events at various scales. Experiments demonstrate that our SASNet outperforms state-of-the-art methods on both synthetic GoPro and real H2D datasets, especially in high-speed motion scenarios. Code and dataset are available at https://github.com/aipixel/SASNet.

Distributed execution of deep learning training involves a dynamic interplay between hardware accelerator architecture and device placement strategy. This is the first work to explore the co-optimization of determining the optimal architecture and device placement strategy through novel algorithms, improving the balance of computational resources, memory usage, and data distribution. Our architecture search leverages tensor and vector units, determining their quantity and dimensionality, and on-chip and off-chip memory configurations. It also determines the microbatch size and decides whether to recompute or stash activations, balancing the memory footprint of training and storage size. For each explored architecture configuration, we use an Integer Linear Program (ILP) to find the optimal schedule for executing operators on the accelerator. The ILP results then integrate with a dynamic programming solution to identify the most effective device placement strategy, combining data, pipeline, and tensor model parallelism across multiple accelerators. Our approach achieves higher throughput on large language models compared to the state-of-the-art TPUv4 and the Spotlight accelerator search framework. The entire source code of PHAZE is available at https://github.com/msr-fiddle/phaze.

Continual learning (CL) aims to learn from sequentially arriving tasks without catastrophic forgetting (CF). By partitioning the network into two parts based on the Lottery Ticket Hypothesis---one for holding the knowledge of the old tasks while the other for learning the knowledge of the new task---the recent progress has achieved forget-free CL. Although addressing the CF issue well, such methods would encounter serious under-fitting in long-term CL, in which the learning process will continue for a long time and the number of new tasks involved will be much higher. To solve this problem, this paper partitions the network into three parts---with a new part for exploring the knowledge sharing between the old and new tasks. With the shared knowledge, this part of network can be learnt to simultaneously consolidate the old tasks and fit to the new task. To achieve this goal, we propose a task-aware **Orthogonal Sparse Network** (OSN), which contains shared knowledge induced network partition and sharpness-aware orthogonal sparse network learning. The former partitions the network to select shared parameters, while the latter guides the exploration of shared knowledge through shared parameters. Qualitative and quantitative analyses, show that the proposed OSN induces minimum to no interference with past tasks, *i.e.*, approximately no forgetting, while greatly improves the model plasticity and capacity, and finally achieves the state-of-the-art performances.

Abductive Learning (ABL) is a promising framework for integrating sub-symbolic perception and logical reasoning through abduction. In this case, the abduction process provides supervision for the perception model from the background knowledge. Nevertheless, this process naturally contains uncertainty, since the knowledge base may be satisfied by numerous potential candidates. This implies that the result of the abduction process, i.e., a set of candidates, is ambiguous; both correct and incorrect candidates are mixed in this set. The prior art of abductive learning selects the candidate that has the minimal inconsistency of the knowledge base. However, this method overlooks the ambiguity in the abduction process and is prone to error when it fails to identify the correct candidates. To address this, we propose Ambiguity-Aware Abductive Learning ($\textrm{A}^3\textrm{BL}$), which evaluates all potential candidates and their probabilities, thus preventing the model from falling into sub-optimal solutions. Both experimental results and theoretical analyses prove that $\textrm{A}^3\textrm{BL}$ markedly enhances ABL by efficiently exploiting the ambiguous abduced supervision.

Pedestrian trajectory prediction aims to predict future trajectories based on observed trajectories. Current state-of-the-art methods often assume that the observed sequences of agents are complete, which is a strong assumption that overlooks inherent uncertainties. Understanding pedestrian behavior when dealing with missing values in the observed sequence is crucial for enhancing the performance of predictive models. In this work, we propose the MultiScale hypergraph for Trajectory Imputation and Prediction (MS-TIP), a novel approach that simultaneously addresses the imputation of missing observations and the prediction of future trajectories. Specifically, we leverage transformers with diagonal masked self-attention to impute incomplete observations. Further, our approach promotes complex interaction modeling through multi-scale hypergraphs, optimizing our trajectory prediction module to capture different types of interactions. With the inclusion of scenic attention, we learn contextual scene information, instead of sole reliance on coordinates. Additionally, our approach utilizes an intermediate control point and refinement module to infer future trajectories accurately. Extensive experiments validate the efficacy of MS-TIP in precisely predicting pedestrian future trajectories. Code is publicly available at https://github.com/Pranav-chib/MS-TIP.

Diffusion-based re-ranking is a common method used for retrieving instances by performing similarity propagation in a nearest neighbor graph. However, existing techniques that construct the affinity graph based on pairwise instances can lead to the propagation of misinformation from outliers and other manifolds, resulting in inaccurate results. To overcome this issue, we propose a novel Cluster-Aware Similarity (CAS) diffusion for instance retrieval. The primary concept of CAS is to conduct similarity diffusion within local clusters, which can reduce the influence from other manifolds explicitly. To obtain a symmetrical and smooth similarity matrix, our Bidirectional Similarity Diffusion strategy introduces an inverse constraint term to the optimization objective of local cluster diffusion. Additionally, we have optimized a Neighbor-guided Similarity Smoothing approach to ensure similarity consistency among the local neighbors of each instance. Evaluations in instance retrieval and object re-identification validate the effectiveness of the proposed CAS, our code is publicly available.

A molecule’s 2D representation consists of its atoms, their attributes, and the molecule’s covalent bonds. A 3D (geometric) representation of a molecule is called a conformer and consists of its atom types and Cartesian coordinates. Every conformer has a potential energy, and the lower this energy, the more likely it occurs in nature. Most existing machine learning methods for molecular property prediction consider either 2D molecular graphs or 3D conformer structure representations in isolation. Inspired by recent work on using ensembles of conformers in conjunction with 2D graph representations, we propose E(3)-invariant molecular conformer aggregation networks. The method integrates a molecule’s 2D representation with that of multiple of its conformers. Contrary to prior work, we propose a novel 2D–3D aggregation mechanism based on a differentiable solver for the Fused Gromov-Wasserstein Barycenter problem and the use of an efficient conformer generation method based on distance geometry. We show that the proposed aggregation mechanism is E(3) invariant and propose an efficient GPU implementation. Moreover, we demonstrate that the aggregation mechanism helps to significantly outperform state-of-the-art molecule property prediction methods on established datasets.

Uncertainty estimation is crucial for deep learning models to detect out-of-distribution (OOD) inputs. However, the naive deep learning classifiers produce uncalibrated uncertainty for OOD data. Improving the uncertainty estimation typically requires external data for OOD-aware training or considerable costs to build an ensemble. In this work, we improve on uncertainty estimation without extra OOD data or additional inference costs using an alternative *Split-Ensemble* method. Specifically, we propose a novel *subtask-splitting* ensemble training objective where a task is split into several complementary subtasks based on feature similarity. Each subtask considers part of the data as in distribution while all the rest as OOD data. Diverse submodels can therefore be trained on each subtask with OOD-aware objectives, learning generalizable uncertainty estimation. To avoid overheads, we enable low-level feature sharing among submodels, building a tree-like Split-Ensemble architecture via iterative splitting and pruning. Empirical study shows Split-Ensemble, without additional computational cost, improves accuracy over a single model by 0.8%, 1.8%, and 25.5% on CIFAR-10, CIFAR-100, and Tiny-ImageNet, respectively. OOD detection for the same backbone and in-distribution datasets surpasses a single model baseline by 2.2%, 8.1%, and 29.6% in mean AUROC, respectively.

Quantization techniques commonly reduce the inference costs of neural networks by restricting the precision of weights and activations. Recent studies show that also reducing the precision of the accumulator can further improve hardware efficiency at the risk of numerical overflow, which introduces arithmetic errors that can degrade model accuracy. To avoid numerical overflow while maintaining accuracy, recent work proposed accumulator-aware quantization (A2Q)—a quantization-aware training method that constrains model weights during training to safely use a target accumulator bit width during inference. Although this shows promise, we demonstrate that A2Q relies on an overly restrictive constraint and a sub-optimal weight initialization strategy that each introduce superfluous quantization error. To address these shortcomings, we introduce: (1) an improved bound that alleviates accumulator constraints without compromising overflow avoidance; and (2) a new strategy for initializing quantized weights from pre-trained floating-point checkpoints. We combine these contributions with weight normalization to introduce A2Q+. We identify and characterize the various tradeoffs that arise as a consequence of accumulator constraints and support our analysis with experiments that show A2Q+ significantly improves these trade-offs when compared to prior methods.

Catastrophic overfitting (CO) presents a significant challenge in single-step adversarial training (AT), manifesting as highly distorted deep neural networks (DNNs) that are vulnerable to multi-step adversarial attacks. However, the underlying factors that lead to the distortion of decision boundaries remain unclear. In this work, we delve into the specific changes within different DNN layers and discover that during CO, the former layers are more susceptible, experiencing earlier and greater distortion, while the latter layers show relative insensitivity. Our analysis further reveals that this increased sensitivity in former layers stems from the formation of $\textit{pseudo-robust shortcuts}$, which alone can impeccably defend against single-step adversarial attacks but bypass genuine-robust learning, resulting in distorted decision boundaries. Eliminating these shortcuts can partially restore robustness in DNNs from the CO state, thereby verifying that dependence on them triggers the occurrence of CO. This understanding motivates us to implement adaptive weight perturbations across different layers to hinder the generation of $\textit{pseudo-robust shortcuts}$, consequently mitigating CO. Extensive experiments demonstrate that our proposed method, $\textbf{L}$ayer-$\textbf{A}$ware Adversarial Weight $\textbf{P}$erturbation (LAP), can effectively prevent CO and further enhance robustness.

Despite impressive results, deep generative models require massive datasets for training, and as dataset size increases, effective evaluation metrics like precision and recall (P&R) become computationally infeasible on commodity hardware. In this paper, we address this challenge by proposing efficient P&R (eP&R) metrics that give almost identical results as the original P&R but with much lower computational costs. Specifically, we identify two redundancies in the original P&R: i) redundancy in ratio computation and ii) redundancy in manifold inside/outside identification. We find both can be effectively removed via hubness-aware sampling, which extracts representative elements from synthetic/real image samples based on their hubness values, i.e., the number of times a sample becomes a k-nearest neighbor to others in the feature space. Thanks to the insensitivity of hubness-aware sampling to exact k-nearest neighbor (k-NN) results, we further improve the efficiency of our eP&R metrics by using approximate k-NN methods. Extensive experiments show that our eP&R matches the original P&R but is far more efficient in time and space. Our code is available at: https://github.com/Byronliang8/Hubness_Precision_Recall

In this work, we propose MagicPose, a diffusion-based model for 2D human pose and facial expression retargeting. Specifically, given a reference image, we aim to generate a person's new images by controlling the poses and facial expressions while keeping the identity unchanged. To this end, we propose a two-stage training strategy to disentangle human motions and appearance (e.g., facial expressions, skin tone, and dressing), consisting of (1) the pre-training of an appearance-control block and (2) learning appearance-disentangled pose control. Our novel design enables robust appearance control over generated human images, including body, facial attributes, and even background. By leveraging the prior knowledge of image diffusion models, MagicPose generalizes well to unseen human identities and complex poses without the need for additional fine-tuning. Moreover, the proposed model is easy to use and can be considered as a plug-in module/extension to Stable Diffusion. The project website is [here](https://boese0601.github.io/magicdance/). The code is available [here](https://github.com/Boese0601/MagicDance).

We introduce **S**yntax-**A**ware **F**ill-**i**n-the-**M**iddle (SAFIM), a new benchmark for evaluating Large Language Models (LLMs) on the code Fill-in-the-Middle (FIM) task. This benchmark focuses on syntax-aware completions of program structures such as code blocks and conditional expressions, and includes 17,720 examples from multiple programming languages, sourced from recent code submissions after April 2022 to minimize data contamination. SAFIM provides a robust framework with various prompt designs and novel syntax-aware post-processing techniques, facilitating accurate and fair comparisons across LLMs. Our comprehensive evaluation of 15 LLMs shows that FIM pretraining not only enhances FIM proficiency but also improves Left-to-Right (L2R) inference using LLMs. Our findings challenge conventional beliefs and suggest that pretraining methods and data quality have more impact than model size. SAFIM thus serves as a foundational platform for future research in effective pretraining strategies for code LLMs. The evaluation toolkit and dataset are available at https://github.com/gonglinyuan/safim, and the leaderboard is available at https://safimbenchmark.com.

Transformers with linear attention allow for efficient parallel training but can simultaneously be formulated as an RNN with 2D (matrix-valued) hidden states, thus enjoying linear-time inference complexity. However, linear attention generally underperforms ordinary softmax attention. Moreover, current implementations of linear attention lack I/O-awareness and are thus slower than highly optimized implementations of softmax attention. This work describes a hardware-efficient algorithm for linear attention that trades off memory movement against parallelizability. The resulting implementation, dubbed FlashLinearAttention, is faster than FlashAttention-2 as a standalone layer even on short sequence lengths (e.g., 1K). We then generalize this algorithm to a more expressive variant of linear attention with data-dependent gates. When used as a replacement for the standard attention layer in Transformers, the resulting gated linear attention (GLA) Transformer is found to perform competitively against the LLaMA-architecture Transformer as well recent linear-time-inference baselines such as RetNet and Mamba on moderate-scale language modeling experiments. GLA Transformer is especially effective at length generalization, enabling a model trained on 2K to generalize to sequences longer than 20K without significant perplexity degradations. For training speed, the GLA Transformer has higher throughput than a similarly-sized Mamba model.

Protein-protein bindings play a key role in a variety of fundamental biological processes, and thus predicting the effects of amino acid mutations on protein-protein binding is crucial. To tackle the scarcity of annotated mutation data, pre-training with massive unlabeled data has emerged as a promising solution. However, this process faces a series of challenges: (1) complex higher-order dependencies among multiple (more than paired) structural scales have not yet been fully captured; (2) it is rarely explored how mutations alter the local conformation of the surrounding microenvironment; (3) pre-training is costly, both in data size and computational burden. In this paper, we first construct a hierarchical prompt codebook to record common microenvironmental patterns at different structural scales independently. Then, we develop a novel codebook pre-training task, namely masked microenvironment modeling, to model the joint distribution of each mutation with their residue types, angular statistics, and local conformational changes in the microenvironment. With the constructed prompt codebook, we encode the microenvironment around each mutation into multiple hierarchical prompts and combine them to flexibly provide information to wild-type and mutated protein complexes about their microenvironmental differences. Such a hierarchical prompt learning framework has demonstrated superior performance and training efficiency over state-of-the-art pre-training-based methods in mutation effect prediction and a case study of optimizing human antibodies against SARS-CoV-2.