ICML 2023 Papers

Deep topic models have shown an impressive ability to extract multi-layer document latent representations and discover hierarchical semantically meaningful topics.However, most deep topic models are limited to the single-step generative process, despite the fact that the progressive generative process has achieved impressive performance in modeling image data. To this end, in this paper, we propose a novel progressive deep topic model that consists of a knowledge-informed textural data coarsening process and a corresponding progressive generative model. The former is used to build multi-level observations ranging from concrete to abstract, while the latter is used to generate more concrete observations gradually. Additionally, we incorporate a graph-enhanced decoder to capture the semantic relationships among words at different levels of observation. Furthermore, we perform a theoretical analysis of the proposed model based on the principle of information theory and show how it can alleviate the well-known "latent variable collapse" problem. Finally, extensive experiments demonstrate that our proposed model effectively improves the ability of deep topic models, resulting in higher-quality latent document representations and topics.

As the field of Graph Neural Networks (GNN) continues to grow, it experiences a corresponding increase in the need for large, real-world datasets to train and test new GNN models on challenging, realistic problems. Unfortunately, such graph datasets are often generated from online, highly privacy-restricted ecosystems, which makes research and development on these datasets hard, if not impossible. This greatly reduces the amount of benchmark graphs available to researchers, causing the field to rely only on a handful of publicly-available datasets. To address this problem, we introduce a novel graph generative model, Computation Graph Transformer (CGT) that learns and reproduces the distribution of real-world graphs in a privacy-controlled way. More specifically, CGT (1) generates effective benchmark graphs on which GNNs show similar task performance as on the source graphs, (2) scales to process large-scale graphs, (3) incorporates off-the-shelf privacy modules to guarantee end-user privacy of the generated graph. Extensive experiments across a vast body of graph generative models show that only our model can successfully generate privacy-controlled, synthetic substitutes of large-scale real-world graphs that can be effectively used to benchmark GNN models.

Implicit graph neural networks (IGNNs) -- that solve a fixed-point equilibrium equation using Picard iteration for representation learning -- have shown remarkable performance in learning long-range dependencies (LRD) in the underlying graphs. However, IGNNs suffer from several issues, including 1) their expressivity is limited by their parameterizations for the well-posedness guarantee, 2) IGNNs are unstable in learning LRD, and 3) IGNNs become computationally inefficient when learning LRD. In this paper, we provide a new well-posedness characterization for IGNNs leveraging monotone operator theory, resulting in a much more expressive parameterization than the existing one. We also propose an orthogonal parameterization for IGNN based on Cayley transform to stabilize learning LRD. Furthermore, we leverage Anderson-accelerated operator splitting schemes to efficiently solve for the fixed point of the equilibrium equation of IGNN with monotone or orthogonal parameterization. We verify the computational efficiency and accuracy of the new models over existing IGNNs on various graph learning tasks at both graph and node levels.

Recently proposed Graph Neural Networks (GNNs) for vertex clustering are trained with an unsupervised minimum cut objective, approximated by a Spectral Clustering (SC) relaxation. However, the SC relaxation is loose and, while it offers a closed-form solution, it also yields overly smooth cluster assignments that poorly separate the vertices. In this paper, we propose a GNN model that computes cluster assignments by optimizing a tighter relaxation of the minimum cut based on graph total variation (GTV). The cluster assignments can be used directly to perform vertex clustering or to implement graph pooling in a graph classification framework. Our model consists of two core components: i) a message-passing layer that minimizes the $\ell_1$ distance in the features of adjacent vertices, which is key to achieving sharp transitions between clusters; ii) an unsupervised loss function that minimizes the GTV of the cluster assignments while ensuring balanced partitions. Experimental results show that our model outperforms other GNNs for vertex clustering and graph classification.

Recent works have demonstrated the benefits of capturing long-distance dependency in graphs by deeper graph neural networks (GNNs). But deeper GNNs suffer from the long-lasting scalability challenge due to the neighborhood explosion problem in large-scale graphs. In this work, we propose to capture long-distance dependency in graphs by shallower models instead of deeper models, which leads to a much more efficient model, LazyGNN, for graph representation learning. Moreover, we demonstrate that LazyGNN is compatible with existing scalable approaches (such as sampling methods) for further accelerations through the development of mini-batch LazyGNN. Comprehensive experiments demonstrate its superior prediction performance and scalability on large-scale benchmarks. The implementation of LazyGNN is available at https: //github.com/RXPHD/Lazy_GNN.

Graph generative models become increasingly effective for data distribution approximation and data augmentation. While they have aroused public concerns about their malicious misuses or misinformation broadcasts, just as what Deepfake visual and auditory media has been delivering to society. Hence it is essential to regulate the prevalence of generated graphs. To tackle this problem, we pioneer the formulation of the generated graph detection problem to distinguish generated graphs from real ones. We propose the first framework to systematically investigate a set of sophisticated models and their performance in four classification scenarios. Each scenario switches between seen and unseen datasets/generators during testing to get closer to real-world settings and progressively challenge the classifiers. Extensive experiments evidence that all the models are qualified for generated graph detection, with specific models having advantages in specific scenarios. Resulting from the validated generality and oblivion of the classifiers to unseen datasets/generators, we draw a safe conclusion that our solution can sustain for a decent while to curb generated graph misuses.

Inductive knowledge graph completion has been considered as the task of predicting missing triplets between new entities that are not observed during training. While most inductive knowledge graph completion methods assume that all entities can be new, they do not allow new relations to appear at inference time. This restriction prohibits the existing methods from appropriately handling real-world knowledge graphs where new entities accompany new relations. In this paper, we propose an INductive knowledge GRAph eMbedding method, InGram, that can generate embeddings of new relations as well as new entities at inference time. Given a knowledge graph, we define a relation graph as a weighted graph consisting of relations and the affinity weights between them. Based on the relation graph and the original knowledge graph, InGram learns how to aggregate neighboring embeddings to generate relation and entity embeddings using an attention mechanism. Experimental results show that InGram outperforms 14 different state-of-the-art methods on varied inductive learning scenarios.

In real-world graphs, noisy connections are inevitable, which makes it difficult to obtain unbiased node representations. Among various attempts to resolve this problem, a method of estimating the counterfactual effects of these connectivities has recently attracted attention, which mainly uses influence functions for single graph elements (i.e., node and edge). However, in this paper, we argue that there is a strongly interacting group effect between the influences of graph elements due to their connectivity. In the same vein, we observe that edge groups connecting to the same train node exhibit significant differences in their influences, hence no matter how negative each is, removing them at once may have a rather negative effect as a group. Based on this motivation, we propose a new edge-removing strategy, Repulsive edge Group Elimination (RGE), that preferentially removes edges with no interference in groups. Empirically, we demonstrate that RGE consistently outperforms existing methods on the various benchmark datasets.

Proposing an effective and flexible matrix to represent a graph is a fundamental challenge that has been explored from multiple perspectives, e.g., filtering in Graph Fourier Transforms. In this work, we develop a novel and general framework which unifies many existing GNN models from the view of parameterized decomposition and filtering, and show how it helps to enhance the flexibility of GNNs while alleviating the smoothness and amplification issues of existing models. Essentially, we show that the extensively studied spectral graph convolutions with learnable polynomial filters are constrained variants of this formulation, and releasing these constraints enables our model to express the desired decomposition and filtering simultaneously. Based on this generalized framework, we develop models that are simple in implementation but achieve significant improvements and computational efficiency on a variety of graph learning tasks. Code is available at https://github.com/qslim/PDF.

Conventional recommender systems are required to train the recommendation model using a centralized database. However, due to data privacy concerns, this is often impractical when multi-parties are involved in recommender system training. Federated learning appears as an excellent solution to the data isolation and privacy problem. Recently, Graph neural network (GNN) is becoming a promising approach for federated recommender systems. However, a key challenge is to conduct embedding propagation while preserving the privacy of the graph structure. Few studies have been conducted on the federated GNN-based recommender system. Our study proposes the first vertical federated GNN-based recommender system, called VerFedGNN. We design a framework to transmit: (i) the summation of neighbor embeddings using random projection, and (ii) gradients of public parameter perturbed by ternary quantization mechanism. Empirical studies show that VerFedGNN has competitive prediction accuracy with existing privacy preserving GNN frameworks while enhanced privacy protection for users' interaction information.

Graph convolutional networks (GCNs) are *discriminative models* that directly model the class posterior $p(y|\mathbf{x})$ for semi-supervised classification of graph data. While being effective, as a representation learning approach, the node representations extracted from a GCN often miss useful information for effective clustering, because the objectives are different. In this work, we design normalizing flows that replace GCN layers, leading to a *generative model* that models both the class conditional likelihood $p(\mathbf{x}|y)$ and the class prior $p(y)$. The resulting neural network, GC-Flow, retains the graph convolution operations while being equipped with a Gaussian mixture representation space. It enjoys two benefits: it not only maintains the predictive power of GCN, but also produces well-separated clusters, due to the structuring of the representation space. We demonstrate these benefits on a variety of benchmark data sets. Moreover, we show that additional parameterization, such as that on the adjacency matrix used for graph convolutions, yields additional improvement in clustering.

The success of graph neural networks (GNNs) provokes the question about explainability: ``Which fraction of the input graph is the most determinant of the prediction?'' Particularly, parametric explainers prevail in existing approaches because of their more robust capability to decipher the black-box (i.e., target GNNs). In this paper, based on the observation that graphs typically share some common motif patterns, we propose a novel non-parametric subgraph matching framework, dubbed MatchExplainer, to explore explanatory subgraphs. It couples the target graph with other counterpart instances and identifies the most crucial joint substructure by minimizing the node corresponding-based distance. Moreover, we note that present graph sampling or node-dropping methods usually suffer from the false positive sampling problem. To alleviate this issue, we design a new augmentation paradigm named MatchDrop. It takes advantage of MatchExplainer to fix the most informative portion of the graph and merely operates graph augmentations on the rest less informative part. Extensive experiments on synthetic and real-world datasets show the effectiveness of our MatchExplainer by outperforming all state-of-the-art parametric baselines with significant margins. Results also demonstrate that MatchDrop is a general scheme to be equipped with GNNs for enhanced performance. The code is available at https://github.com/smiles724/MatchExplainer.

Graphs are omnipresent and GNNs are a powerful family of neural networks for learning over graphs. Despite their popularity, scaling GNNs either by deepening or widening suffers from prevalent issues of $\textit{unhealthy gradients, over-smoothening, information squashing}$, which often lead to sub-standard performance. In this work, we are interested in exploring a principled way to scale GNNs capacity without deepening or widening, which can improve its performance across multiple small and large graphs. Motivated by the recent intriguing phenomenon of model soups, which suggest that fine-tuned weights of multiple large-language pre-trained models can be merged to a better minima, we argue to exploit the fundamentals of model soups to mitigate the aforementioned issues of memory bottleneck and trainability during GNNs scaling. More specifically, we propose not to deepen or widen current GNNs, but instead present $\textbf{first data-centric perspective}$ of model soups to build powerful GNNs by dividing giant graph data to build independently and parallelly trained multiple comparatively weaker GNNs without any intermediate communication, and $\textit{combining their strength}$ using a greedy interpolation soup procedure to achieve state-of-the-art performance. Moreover, we provide a wide variety of model soup preparation techniques by leveraging state-of-the-art graph sampling and graph partitioning approaches that can handle large graph data structures. Our extensive experiments across many real-world small and large graphs, illustrate the effectiveness of our approach and point towards a promising orthogonal direction for GNN scaling. Codes are available at: https://github.com/VITA-Group/graph_ladling

Graph neural networks (GNNs) are one of the most popular research topics for deep learning. GNN methods typically have been designed on top of the graph signal processing theory. In particular, diffusion equations have been widely used for designing the core processing layer of GNNs, and therefore they are inevitably vulnerable to the notorious oversmoothing problem. Recently, a couple of papers paid attention to reaction equations in conjunctions with diffusion equations. However, they all consider limited forms of reaction equations. To this end, we present a reaction-diffusion equation-based GNN method that considers all popular types of reaction equations in addition to one special reaction equation designed by us. To our knowledge, our paper is one of the most comprehensive studies on reaction-diffusion equation-based GNNs. In our experiments with 9 datasets and 28 baselines, our method, called GREAD, outperforms them in a majority of cases. Further synthetic data experiments show that it mitigates the oversmoothing problem and works well for various homophily rates.

Relational pooling is a framework for building more expressive and permutation-invariant graph neural networks. However, there is limited understanding of the exact enhancement in the expressivity of RP and its connection with the Weisfeiler-Lehman hierarchy. Starting from RP, we propose to explicitly assign labels to nodes as additional features to improve graph isomorphism distinguishing power of message passing neural networks. The method is then extended to higher-dimensional WL, leading to a novel $k,l$-WL algorithm, a more general framework than $k$-WL. We further introduce the subgraph concept into our hierarchy and propose a localized $k,l$-WL framework, incorporating a wide range of existing work, including many subgraph GNNs. Theoretically, we analyze the expressivity of $k,l$-WL w.r.t. $k$ and $l$ and compare it with the traditional $k$-WL. Complexity reduction methods are also systematically discussed to build powerful and practical $k,l$-GNN instances. We theoretically and experimentally prove that our method is universally compatible and capable of improving the expressivity of any base GNN model. Our $k,l$-GNNs achieve superior performance on many synthetic and real-world datasets, which verifies the effectiveness of our framework.

We provide an efficient implementation of the backpropagation algorithm, specialized to the case where the weights of the neural network being trained are _sparse_. Our algorithm is general, as it applies to arbitrary (unstructured) sparsity and common layer types (e.g., convolutional or linear). We provide a fast vectorized implementation on commodity CPUs, and show that it can yield speedups in end-to-end runtime experiments, both in transfer learning using already-sparsified networks, and in training sparse networks from scratch. Thus, our results provide the first support for sparse training on commodity hardware.

The study of universal approximation properties (UAP) for neural networks (NN) has a long history. When the network width is unlimited, only a single hidden layer is sufficient for UAP. In contrast, when the depth is unlimited, the width for UAP needs to be not less than the critical width $w^*_{\min}=\max(d_x,d_y)$, where $d_x$ and $d_y$ are the dimensions of the input and output, respectively. Recently, (Cai, 2022) shows that a leaky-ReLU NN with this critical width can achieve UAP for $L^p$ functions on a compact domain $\mathcal{K}$, *i.e.,* the UAP for $L^p(\mathcal{K},\mathbb{R}^{d_y})$. This paper examines a uniform UAP for the function class $C(\mathcal{K},\mathbb{R}^{d_y})$ and gives the exact minimum width of the leaky-ReLU NN as $w_{\min}=\max(d_x+1,d_y)+1_{d_y=d_x+1}$, which involves the effects of the output dimensions. To obtain this result, we propose a novel lift-flow-discretization approach that shows that the uniform UAP has a deep connection with topological theory.

Although graph neural networks (GNNs) have achieved impressive achievements in graph classification, they often need abundant task-specific labels, which could be extensively costly to acquire. A credible solution is to explore additional labeled graphs to enhance unsupervised learning on the target domain. However, how to apply GNNs to domain adaptation remains unsolved owing to the insufficient exploration of graph topology and the significant domain discrepancy. In this paper, we propose Coupled Contrastive Graph Representation Learning (CoCo), which extracts the topological information from coupled learning branches and reduces the domain discrepancy with coupled contrastive learning. CoCo contains a graph convolutional network branch and a hierarchical graph kernel network branch, which explore graph topology in implicit and explicit manners. Besides, we incorporate coupled branches into a holistic multi-view contrastive learning framework, which not only incorporates graph representations learned from complementary views for enhanced understanding, but also encourages the similarity between cross-domain example pairs with the same semantics for domain alignment. Extensive experiments on popular datasets show that our CoCo outperforms these competing baselines in different settings generally.

Transformers for graph data are increasingly widely studied and successful in numerous learning tasks. Graph inductive biases are crucial for Graph Transformers, and previous works incorporate them using message-passing modules and/or positional encodings. However, Graph Transformers that use message-passing inherit known issues of message-passing, and differ significantly from Transformers used in other domains, thus making transfer of research advances more difficult. On the other hand, Graph Transformers without message-passing often perform poorly on smaller datasets, where inductive biases are more crucial. To bridge this gap, we propose the Graph Inductive bias Transformer (GRIT) --- a new Graph Transformer that incorporates graph inductive biases without using message passing. GRIT is based on several architectural changes that are each theoretically and empirically justified, including: learned relative positional encodings initialized with random walk probabilities, a flexible attention mechanism that updates node and node-pair representations, and injection of degree information in each layer. We prove that GRIT is expressive --- it can express shortest path distances and various graph propagation matrices. GRIT achieves state-of-the-art empirical performance across a variety of graph datasets, thus showing the power that Graph Transformers without message-passing can deliver.