AAAI 2026 Papers

Understanding brain function represents a fundamental goal in neuroscience, with critical implications for therapeutic interventions and neural engineering applications. Computational modeling provides a quantitative framework for accelerating this understanding, but faces a fundamental trade-off between computational efficiency and high-fidelity modeling. To address this limitation, we introduce a novel Energy-based Autoregressive Generation (EAG) framework that employs an energy-based transformer learning temporal dynamics in latent space through strictly proper scoring rules, enabling efficient generation with realistic population and single-neuron spiking statistics. Evaluation on synthetic Lorenz datasets and two Neural Latents Benchmark datasets (MC_Maze and Area2_bump) demonstrates that EAG achieves state-of-the-art generation quality with substantial computational efficiency improvements, particularly over diffusion-based methods. Beyond optimal performance, conditional generation applications show two capabilities: generalizing to unseen behavioral contexts and improving motor brain-computer interface decoding accuracy using synthetic neural data. These results demonstrate the effectiveness of energy-based modeling for neural population dynamics with applications in neuroscience research and neural engineering.

As microservice architectures become increasingly complex and system events become more frequent, Root Cause Analysis (RCA) has emerged as a critical task to ensure system reliability. However, existing deep learning-based methods often struggle with limited flexibility and a lack of interpretability when addressing complex system failures. Recent efforts to integrate large language models (LLMs) have shown promise in enhancing diagnostic transparency and reasoning capability. However, expansive search spaces, intricate workflows, and entangled constraints constrain practical adoption. We propose RCAFlow, a multi-agent framework that integrates structured workflow knowledge with hierarchical planning to address these challenges. RCAFlow transforms semi-structured documents into behavior tree-style workflows to support interpretable plan generation, employs a Git-inspired branching mechanism for modular and hierarchical task execution with path isolation, and leverages state-aware task execution with semantic analysis to improve result understanding and feedback. We evaluate RCAFlow on three benchmark datasets provided by OpenRCA. Experimental results demonstrate that RCAFlow consistently outperforms existing methods across all datasets. Further ablation studies confirm the effectiveness of each core module, highlighting the reliability, extensibility, and interpretability of RCAFlow to support complex RCA tasks within intelligent IT operations.

Recent advances in Time Series Foundation Models (TSFMs) have fundamentally revolutionized general time series analysis across domains like finance, retail, weather, and power. However, how to unlock the hidden capacity of general-purpose TSFMs for wearable activity recognition still remains largely unexplored, given severe sensor annotation scarcity and highly heterogeneous sensor data. To address these challenges, we propose DeepSenseMoE—a novel multi-scale convolution-based Mixture of Experts (MoE) module for parameter-efficient fine-tuning of general-purpose TSFMs to sensor-based activity recognition. DeepSenseMoE integrates three key innovations: (1) Multi-scale convolutional experts with different filter sizes responsible for capturing varying sensor contexts; (2) Shared-expert isolation mechanism compressing common activity knowledge into a single shared expert while reducing redundancy among routed experts; and (3) Hierarchical supervised contrastive alignment guiding experts to further learn discriminative activity features. Extensive experiments on three challenging HAR benchmarks demonstrate DeepSenseMoE's superiority, achieving up to 9.5% accuracy gains over state-of-the-art under few-shot and full-supervised settings, with only

Identity-preserving models have led to notable progress in generating personalized content. Unfortunately, such models also exacerbate risks when misused, for instance, by generating threatening content targeting specific individuals. This paper introduces the Attribute Misbinding Attack, a novel method that poses a threat to identity-preserving models by inducing them to produce Not-Safe-For-Work (NSFW) content. The attack's core idea involves crafting benign-looking textual prompts to circumvent text-filter safeguards and leverage a key model vulnerability: flawed attribute binding that stems from its internal attention bias. This results in misattributing harmful descriptions to a target identity and generating NSFW outputs. To facilitate the study of this attack, we present the Misbinding Prompt evaluation set, which examines the content generation risks of current state-of-the-art identity-preserving models across four risk dimensions: pornography, violence, discrimination, and illegality. Additionally, we introduce the Attribute Binding Safety Score (ABSS), a metric for concurrently assessing both content fidelity and safety compliance. Experimental results show that our Misbinding Prompt evaluation set achieves a 5.28 % higher success rate in bypassing five leading text filters (including GPT-4o) compared to existing main-stream evaluation sets, while also demonstrating the highest proportion of NSFW content generation. The proposed ABSS metric enables a more comprehensive evaluation of identity-preserving models by concurrently assessing both content fidelity and safety compliance.

Large Language Models show promise in emotion understanding, social reasoning, and empathy, yet struggle with psychologically grounded tasks requiring inference of implicit mental states in complex, socially and contextually ambiguous settings. These limitations stem from lacking theory-aligned supervision and difficulty capturing nuanced mental processes in real-world narratives. To bridge this gap, we leverage expert-labeled scenarios and propose a trajectory-aware reinforcement learning framework imitating expert psychological reasoning. By integrating real-world stimuli with structured reasoning guidance, our approach enables compact models to internalize social-cognitive principles, perform nuanced inference, and support continual self-improvement. Experiments across benchmarks show expert-level interpretive capability across psychological tasks.

Despite recent advancements in 3D-text cross-modal alignment, existing state-of-the-art methods still struggle to align fine-grained textual semantics with detailed geometric structures, and their alignment performance degrades significantly when scaling to large-scale 3D databases. To overcome this limitation, we introduce 3DAlign-DAER, a unified framework designed to align text and 3D geometry via the proposed dynamic attention policy and the efficient retrieval strategy, capturing subtle correspondences for diverse cross-modal retrieval and classification tasks. Specifically, during the training, our proposed dynamic attention policy (DAP) employs the Hierarchical Attention Fusion (HAF) module to represent the alignment as learnable fine-grained token-to-point attentions. To optimize these attentions across different tasks and geometric hierarchies, our DAP further exploits the Monte Carlo tree search to dynamically calibrate HAF attention weights via a hybrid reward signal and further enhances the alignment between textual descriptions and local 3D geometry. During the inference, our 3DAlign-DAER introduces an Efficient Retrieval Strategy (ERS) to leverage efficient hierarchical searching in the large-scale embedding spaces, outperforming traditional methods (eg, KNN) in accuracy and efficiency. Furthermore, to facilitate text-3D alignment research and train our 3DAlign-DAER, we construct Align3D-2M, a large-scale dataset featuring 2M text-3D pairs, to provide sufficient fine-grained cross-modal annotations. Extensive and comprehensive experiments demonstrate the superior performance of our 3DAlign-DAER on diverse benchmarks.

Probabilistic forecasting is not only a way to add more information to a prediction of the future, but it also builds on weaknesses in point prediction. Sudden changes in a time series can still be captured by a cumulative distribution function (CDF), while a point prediction is likely to miss it entirely. The modeling of CDFs within forecasts has historically been limited to parametric approaches, but due to recent advances, this no longer has to be the case. We aim to advance the fields of probabilistic forecasting and monotonic networks by connecting them and propose an approach that permits the forecasting of implicit, complete, and nonparametric CDFs. For this purpose, we propose an adaptation to deep lattice networks (DLN) for monotonically constrained simultaneous/implicit quantile regression in time series forecasting. Quantile regression usually produces quantile crossovers, which need to be prevented to achieve a legitimate CDF. By leveraging long short term memory units (LSTM) as the embedding layer, and spreading quantile inputs to all sub-lattices of a DLN with an extended output size, we can produce a multi-horizon forecast of an implicit CDF due to the monotonic constraintability of DLNs that prevent quantile crossovers. We compare and evaluate our approach's performance to relevant state of the art within the context of a highly relevant application of time series forecasting: Day-ahead, hourly forecasts of solar irradiance observations. Our experiments show that the adaptation of a DLN performs just as well or even better than an unconstrained approach. Further comparison of the adapted DLN against a scalable monotonic neural network shows that our approach performs better. With this adaptation of DLNs, we intend to create more interest and crossover investigations in techniques of monotonic neural networks and probabilistic forecasting.

Sparse Urban CrowdSensing (Sparse UCS) is a practical paradigm for completing full sensing maps from limited observations. However, existing methods typically rely on a time-discrete assumption, where data is considered static within fixed intervals. This simplification introduces significant errors as real-world data changes continuously. To address this, we propose a framework for time-continuous data completion. Our approach, Time-Aware Mamba-based Deep Matrix Factorization (TIME-DMF), leverages the Mamba architecture as a powerful temporal encoder. Crucially, we enhance Mamba with a novel time-aware mechanism that explicitly incorporates the actual, often irregular, physical time intervals between observations into its state transitions. This allows our model to accurately capture true temporal dynamics and generate high-fidelity data for any queried moment in time through a query-generate mechanism. Extensive experiments on five diverse sensing tasks demonstrate that TIME-DMF significantly outperforms state-of-the-art methods, validating the superiority of the time-continuous paradigm for Sparse UCS.

With the advancements of large language models (LLMs), intelligent tutoring systems have witnessed significant progress. The extensive knowledge and reasoning capabilities of LLMs enable intelligent tutoring systems to generate more helpful tutoring dialogues with scaffolding instructions. However, these systems fail to provide scaffolds that align with the personalized needs of students due to the lack of attention to the long-term learning process of students. Meanwhile, the pursuit of more suitable scaffolds through complex reasoning may result in additional computational overhead. To address these issues, we propose LEAP, a Long-term Educational Adaptive Planning system that can model students' long-term learning process. Specifically, LEAP plans for scaffolds through collaboration of direct planning and thoughtful reasoning to improve efficiency and captures students' long-term learning progress through cognitive state extraction. Then we propose LEAD, a Long-term Educational Archive Dataset to alleviate the lack of data and validate the effectiveness of LEAP, which is constructed through real-world students' reactions and simulation of the teacher-student interactions. Experiments on several datasets demonstrate the effectiveness of LEAP.

Optimization modeling and solving are fundamental to the application of Operations Research (OR) in real-world decision making, yet the process of translating natural language problem descriptions into formal models and solver code remains highly expertise intensive. While recent advances in large language models (LLMs) have opened new opportunities for automation, the generalization ability and data efficiency of existing LLM-based methods are still limited, asmost require vast amounts of annotated or synthetic data, resulting in high costs and scalability barriers. In this work, we present OR-R1, a data-efficient training framework for automated optimization modeling and solving. OR-R1 first employs supervised fine-tuning (SFT) to help the model acquire the essential reasoning patterns for problem formulation and code generation from limited labeled data. In addition, it improves the capability and consistency through Test-Time Group Relative Policy Optimization (TGRPO). This two-stage design enables OR-R1 to leverage both scarce labeled and abundant unlabeled data for effective learning. Experiments show that OR-R1 achieves state-of-the-art performance with an average solving accuracy of 67.7%, using only 1/10 the synthetic data required by prior methods such as ORLM, exceeding ORLM’s solving accuracy by up to 4.2%. Remarkably, OR-R1 outperforms ORLM by over 2.4% with just 100 synthetic samples. Furthermore, TGRPO contributes an additional 3.1%–6.4% improvement in accuracy, significantly narrowing the gap between single-attempt (Pass@1) and multi-attempt (Pass@8) performance from 13% to 7%. Extensive evaluations across diverse real-world benchmarks demonstrate that OR-R1 provides a robust, scalable, and cost-effective solution for automated OR optimization problem modeling and solving, lowering the expertise and data barriers for industrial OR applications.

Pre-training large language models on genomic sequences has become a powerful approach for learning biologically meaningful representations. While masked language modeling (MLM)-based approaches, such as DNABERT and Nucleotide Transformer (NT), achieve strong performance, they are hindered by inefficiencies due to partial token supervision, pre-training/fine-tuning mismatches, and high computational costs. We introduce NucEL, the first ELECTRA-style pre-training framework for genomic foundation models, which overcomes these challenges. Through a discriminator network identifying tokens modified by a generator, NucEL achieves comprehensive token-level supervision across all sequence positions, thereby markedly improving training efficiency relative to the partial supervision of masked positions inherent in MLM frameworks. By integrating ModernBERT’s architectural advancements, including hybrid local-global attention and flash attention mechanisms, NucEL establishes an optimized BERT architecture for genomic sequence modeling. Unlike traditional methods that tokenize genomic sequences into 6-mers, NucEL implements single-nucleotide tokenization, enabling fine-grained resolution and improving both efficiency and interpretability. Pre-trained on the human genome only, NucEL achieves state-of-the-art performance on benchmark datasets across diverse downstream tasks in both human and non-human species, including regulatory element identification (e.g., promoters, enhancers), transcription factor binding prediction in human and mouse, open chromatin region classification, and histone modification profiles, surpassing MLM-based models of similar size and rivaling models 25 times larger, such as NT. Ablation studies provide critical insights into tokenization and masking strategies, optimizing ELECTRA-style pretraining for DNA sequences. Attention analyses reveal NucEL’s superior ability to capture biologically relevant sequence motifs compared to NT, offering valuable insights into its hierarchical learning process and regulatory element modeling capabilities. This work highlights the potential of ELECTRA-style pretraining as an efficient and effective strategy for advancing genomic representation learning with broad implications for future genomic research.

Constructing historical language models (LMs) plays a crucial role in aiding archaeological provenance studies and understanding ancient cultures. However, existing resources present major challenges for training effective LMs on historical texts. First, the scarcity of historical language samples renders unsupervised learning approaches based on large text corpora highly inefficient, hindering effective pre-training. Moreover, due to the considerable temporal gap and complex evolution of ancient scripts, the absence of comprehensive character encoding schemes limits the digitization and computational processing of ancient texts, particularly in early Chinese writing. To address these challenges, we introduce InteChar, a unified and extensible character list that integrates unencoded oracle bone characters with traditional and modern Chinese. InteChar enables consistent digitization and representation of historical texts, providing a foundation for robust modeling of ancient scripts. To evaluate the effectiveness of InteChar, we construct the Oracle Corpus Set (OracleCS), an ancient Chinese corpus that combines expert-annotated samples with LLM-assisted data augmentation, centered on Chinese oracle bone inscriptions. Extensive experiments show that models trained with InteChar on OracleCS achieve substantial improvements across various historical language understanding tasks, confirming the effectiveness of our approach and establishing a solid foundation for future research in ancient Chinese NLP.

Protein-Protein Interactions (PPIs) prediction is crucial for understanding cellular functions and disease mechanisms. Existing deep learning–based methods primarily rely on direct interaction within the PPI network to update protein representations. However, (1) such networks overlook the potential associations between functionally similar proteins, limiting the smoothing capability of Graph Neural Networks (GNNs) in learning representations for similar nodes. (2) Additionally, most approaches fail to adequately model the latent dependencies among interaction types (edge labels), which hinders their performance in PPI prediction tasks. To address these limitations, we propose TELC-PPI, a topology-enhanced and label correlation-aware model for protein-protein interactions prediction. Specifically, TELC-PPI first identifies similar proteins by leveraging both the topological information of the PPI network and the label distributions of nodes, constructing similarity edges. Then, it incorporates label co-occurrence statistics into the learning of label embeddings. Experimental results on multiple datasets and under various data split settings demonstrate that TELC-PPI significantly outperforms existing methods, validating the effectiveness of our model design.

The rise of 3D generative models has enabled automatic 3D geometry and texture synthesis from multimodal inputs (e.g., text or images). However, these methods often ignore physical constraints and manufacturability considerations. In this work, we address the challenge of producing 3D designs that are both lightweight and self-supporting. We present DensiCrafter, a framework for generating lightweight, self-supporting 3D hollow structures by optimizing the density field. Starting from coarse voxel grids produced by Trellis, we interpret these as continuous density fields to optimize and introduce three differentiable, physically constrained, and simulation-free loss terms. Additionally, a mass regularization penalizes unnecessary material, while a restricted optimization domain preserves the outer surface. Our method seamlessly integrates with pretrained Trellis-based models (e.g., Trellis, DSO) without any architectural changes. In extensive evaluations, we achieve up to 43% reduction in material mass on the text-to-3D task. Compared to state-of-the-art baselines, our method could improve the stability and maintain high geometric fidelity. Real-world 3D-printing experiments confirm that our hollow designs can be reliably fabricated and could be self-supporting.

Being able to anticipate the motion of surrounding agents is essential for the safe operation of autonomous driving systems in dynamic situations. While various methods have been proposed for trajectory prediction, the current evaluation practices still rely on error-based metrics (e.g., ADE, FDE), which reveal the accuracy from a post-hoc view but ignore the actual effect the predictor brings to the self-driving vehicles (SDVs), especially in complex interactive scenarios: a high-quality predictor not only chases accuracy, but should also captures all possible directions a neighbor agent might move, to support the SDVs' cautious decision-making. Given that the existing metrics hardly account for this standard, in our work, we propose a comprehensive pipeline that adaptively evaluates the predictor's performance by two dimensions: accuracy and diversity. Based on the criticality of the driving scenario, these two dimensions are dynamically combined and result in a final score for the predictor's performance. Extensive experiments on a closed-loop benchmark using a real-world dataset show that our pipeline yields a more reasonable evaluation than traditional metrics by better reflecting the correlation of the predictors' evaluation with the autonomous vehicles' driving performance. This evaluation pipeline shows a robust way to select a predictor that potentially contributes most to the SDV's driving performance.

Real-world multimodal misinformation often arises from mixed forgery sources, requiring dynamic reasoning and adaptive verification. However, existing methods mainly rely on static pipelines and limited tool usage, limiting their ability to handle such complexity and diversity. To address this challenge, we propose T2Agent, a novel misinformation detection agent that incorporates an extensible toolkit with Monte Carlo Tree Search (MCTS). The toolkit consists of modular tools such as web search, forgery detection, and consistency analysis. Each tool is described using standardized templates, enabling seamless integration and future expansion. To avoid inefficiency from using all tools simultaneously, a greedy search-based selector is proposed to identify a task-relevant subset. This subset then serves as the action space for MCTS to dynamically collect evidence and perform multi-source verification. To better align MCTS with the multi-source nature of misinformation detection, T2Agent extends traditional MCTS with multi-source verification, which decomposes the task into coordinated subtasks targeting different forgery sources. A dual reward mechanism containing a reasoning trajectory score and a confidence score is further proposed to encourage a balance between exploration across mixed forgery sources and exploitation for more reliable evidence. We conduct ablation studies to confirm the effectiveness of the tree search mechanism and tool usage. Extensive experiments further show that T2Agent consistently outperforms existing baselines on challenging mixed-source multimodal misinformation benchmarks, demonstrating its strong potential as a training-free detector.

Vulnerability-Fixing Commit Identification(VFCI) is a critical task in software security maintenance that aims to automatically identify code commits that patch security vulnerabilities. However, existing approaches face challenges in handling low-quality commit messages and entangled commits, which limit their identification performance. To address these issues, we propose VFCionX, a novel VFCI framework that integrates large and small language models in a collaborative architecture. VFCionX consists of three core modules: Message Classifier, Patch Classifier, and Ensemble Classifier. The Message Classifier employs a multi-source contextual augmentation strategy to enhance the quality of commit messages and fine-tunes the Qwen2.5-1.5B model, significantly improving classification performance in the textual modality. The Patch Classifier combines heuristic rules with a Qwen2.5-Coder-7B-driven file selector to filter noise from entangled commits, and incorporates a line-level feature extractor based on CodeBERT and CNN to capture local pattern differences between added and deleted code lines. The Ensemble Classifier integrates predictions from both channels using the AdaBoost algorithm, enhancing model robustness and generalization. Experimental results on five popular C/C++ repositories comprising 24,630 commits show that VFCionX achieves an F1-score of 81.47%, outperforming the best baseline by 9.42%. Ablation studies validate the effectiveness of each component, while sensitivity analysis reveals optimal parameter settings for balancing performance and noise resilience. This work provides a new and effective solution for robust vulnerability patch identification.

Sensory Temporal Action Detection (STAD) aims to localize and classify human actions within long, untrimmed sequences captured by non-visual sensors such as WiFi or inertial measurement units (IMUs). Unlike video-based TAD, STAD poses unique challenges due to the low-dimensional, noisy, and heterogeneous nature of sensory data, as well as the real-time and resource constraints on edge devices. While recent STAD models have improved detection performance, their high computational cost hampers practical deployment. In this paper, we propose SlimSTAD, a simple yet effective framework that achieves both high accuracy and low latency for STAD. SlimSTAD features a novel Decoupled Channel Modeling (DCM) encoder, which preserves modality-specific temporal features and enables efficient inter-channel aggregation via lightweight graph attention. An anchor-free cascade predictor then refines action boundaries and class predictions in a two-stage design without dense proposals. Experiments on two real-world datasets demonstrate that SlimSTAD outperforms strong video-derived and sensory baselines by an average of 2.1 mAP, while significantly reducing GFLOPs, parameters, and latency, validating its effectiveness for real-world, edge-aware STAD deployment.

Understanding the structural dynamics of biomolecules is crucial for uncovering biological functions. As molecular dynamics (MD) simulation data becomes more available, deep generative models have been developed to synthesize realistic MD trajectories. However, existing methods produce fixed-length trajectories by jointly denoising high-dimensional spatiotemporal representations, which conflicts with MD’s frame-by-frame integration process and fails to capture time-dependent conformational diversity. Inspired by MD's sequential nature, we introduce a new probabilistic autoregressive (ProAR) framework for trajectory generation. ProAR uses a dual-network system that models each frame as a multivariate Gaussian distribution and employs an anti-drifting sampling strategy to reduce cumulative errors. This approach captures conformational uncertainty and time-coupled structural changes while allowing flexible generation of trajectories of arbitrary length. Experiments on ATLAS, a large-scale protein MD dataset, demonstrate that for long trajectory generation, our model achieves a 7.5% reduction in reconstruction RMSE and an average 25.8% improvement in conformation change accuracy compared to previous state-of-the-art methods. For conformation sampling task, it performs comparably to specialized time-independent models, providing a flexible and dependable alternative to standard MD simulations.